Clone BO07030 Report

Search the DGRC for BO07030

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptAg5r-RA
Protein status:BO07030.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO07030.5prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-03

> BO07030.5prime
GAAGTTATCAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTC
TGGCATTTGGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGA
AGCACCAAGAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTG
TCCCAGTGACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCAC
TGGTGGCCAGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAAT
GCCAATCTGAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGA
ACTGGCTTACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACG
ACGGCTGCCACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCC
TGGATGGGCTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGG
CGTCGATATGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCG
ATGCCTATCCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTG
CTCGTTGCCGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTC
CGTGTCCGGCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGG
CCACCAATGTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCC
AGCAAGTGTACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGC
CAAGGAGGAGTACAACGTANACAACCTCTTCTATGCAAGCTTTCTAGACC

BO07030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9538-PA 771 Ag5r-RA 1..768 17..784 3821 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ag5r-RC 1760 CG9538-RC 342..1109 17..784 3829 99.9 Plus
Ag5r-RB 1446 CG9538-RB 28..795 17..784 3829 99.9 Plus
Ag5r-RA 1011 CG9538-RA 28..795 17..784 3829 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14785315..14785965 784..134 3244 99.8 Minus
X 23542271 X 14786093..14786210 134..17 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:13:22 has no hits.

BO07030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:10 Download gff for BO07030.5prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:31 Download gff for BO07030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9538-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:21 Download gff for BO07030.5prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 25..801 14..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:41 Download gff for BO07030.5prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 25..801 14..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:41 Download gff for BO07030.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14785309..14785965 134..790 99 <- Minus
X 14786094..14786213 14..133 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:21 Download gff for BO07030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14679342..14679998 134..790 99 <- Minus
arm_X 14680127..14680246 14..133 99   Minus

BO07030.3prime Sequence

800 bp (799 high quality bases) assembled on 2005-12-03

> BO07030.3prime
ATGGTCTAGAAAGCTTGCATAGAAGAGGTTGTTTACGTTGTACTCCTCCT
TGGCGCTGCACAGATACTTGTACTTGGGATTGGTACCGGTGGTACACTTG
CTGGCCGCCTTGGAGCAGGAACTGTACATCTTGATGCCCAGAACATTGGT
GGCCGCATAGTTACAGGCCAGCAGGAAGGCCTTGTACGATTGGCCGGACA
CGGAGTACGTGGCCGCGGCACAACCCACTTCCGTATTCCGATCGGCAACG
AGCACCGTGAAATGTCCAATGGCCGGACCATTGTAGTTCGACGGATAGGC
ATCGATGTAGGCCTGTTTGGTGTACACCGCCTCATCGTACCACATATCGA
CGCCCCATTCTAGATAGTGTGTAACATTTAGCGGATTGTAGTAGCCCATC
CAGGCCAGATTCTGGCCAGACCAGTCGAAAGCATCCGTATTGTGGCAGCC
GTCGTGTTTCATTTGACAACTTTTCACGTTCAAACTGGCCAAGTAAGCCA
GTTCATCGTTCCACTTGATCGTGGCCATTCGACAGGCGGCACTCAGATTG
GCATTCAGTCCGCCGGCGATGTGGTTGCGATACTCGTTCGTCCTGGCCAC
CAGTGCATCCTTCTCAGCGCTGGAGAGGGTCAACAGGGTGGCGTCACTGG
GACAGCTTGAGGCCCAGGCTCCATTATTGTCGCATCCCAGATTCTTGGTG
CTTCCGCAGCTCTTTTTGCAATAATCGGTGGCGGAGGCGATGCCAAATGC
CAGAGATAGGCTAAATATGATCACGAAGTTGCGCATGTCGACTGATAACT

BO07030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9538-PA 771 Ag5r-RA 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Ag5r-RC 1760 CG9538-RC 342..1109 786..19 3840 100 Minus
Ag5r-RB 1446 CG9538-RB 28..795 786..19 3840 100 Minus
Ag5r-RA 1011 CG9538-RA 28..795 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14785315..14785965 19..669 3255 100 Plus
X 23542271 X 14786093..14786210 669..786 590 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:12:56 has no hits.

BO07030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:09 Download gff for BO07030.3prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r-PA 1..771 16..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:30 Download gff for BO07030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9538-PA 1..771 16..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:20 Download gff for BO07030.3prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 25..801 13..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:36 Download gff for BO07030.3prime
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 25..801 13..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:36 Download gff for BO07030.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14785309..14785965 13..669 99 <- Plus
X 14786094..14786213 670..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:20 Download gff for BO07030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14679342..14679998 13..669 99 <- Plus
arm_X 14680127..14680246 670..789 99   Plus

BO07030.complete Sequence

802 bp (802 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630632

> BO07030.complete
GAAGTTATCAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTC
TGGCATTTGGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGA
AGCACCAAGAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTG
TCCCAGTGACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCAC
TGGTGGCCAGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAAT
GCCAATCTGAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGA
ACTGGCTTACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACG
ACGGCTGCCACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCC
TGGATGGGCTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGG
CGTCGATATGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCG
ATGCCTATCCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTG
CTCGTTGCCGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTC
CGTGTCCGGCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGG
CCACCAATGTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCC
AGCAAGTGTACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGC
CAAGGAGGAGTACAACGTAAACAACCTCTTCTATGCAAGCTTTCTAGACC
AT

BO07030.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ag5r-RC 771 CG9538-PC 1..768 17..784 3840 100 Plus
Ag5r-RB 771 CG9538-PB 1..768 17..784 3840 100 Plus
Ag5r-RA 771 CG9538-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ag5r-RC 1760 CG9538-RC 342..1109 17..784 3840 100 Plus
Ag5r-RB 1446 CG9538-RB 28..795 17..784 3840 100 Plus
Ag5r-RA 1011 CG9538-RA 28..795 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14785315..14785965 784..134 3255 100 Minus
X 23542271 X 14786093..14786210 134..17 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:47:41 has no hits.

BO07030.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:56 Download gff for BO07030.complete
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:46 Download gff for BO07030.complete
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 21..797 14..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:07 Download gff for BO07030.complete
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 28..795 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:56 Download gff for BO07030.complete
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 21..797 14..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:39 Download gff for BO07030.complete
Subject Subject Range Query Range Percent Splice Strand
Ag5r-RA 28..795 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:39 Download gff for BO07030.complete
Subject Subject Range Query Range Percent Splice Strand
X 14785312..14785965 134..786 99 <- Minus
X 14786094..14786210 17..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:07 Download gff for BO07030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14679345..14679998 134..786 99 <- Minus
arm_X 14680127..14680243 17..133 100   Minus

BO07030.pep Sequence

Translation from 16 to 802

> BO07030.pep
MRNFVIIFSLSLAFGIASATDYCKKSCGSTKNLGCDNNGAWASSCPSDAT
LLTLSSAEKDALVARTNEYRNHIAGGLNANLSAACRMATIKWNDELAYLA
SLNVKSCQMKHDGCHNTDAFDWSGQNLAWMGYYNPLNVTHYLEWGVDMWY
DEAVYTKQAYIDAYPSNYNGPAIGHFTVLVADRNTEVGCAAATYSVSGQS
YKAFLLACNYAATNVLGIKMYSSCSKAASKCTTGTNPKYKYLCSAKEEYN
VNNLFYASFLDH

BO07030.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ag5r-PC 256 CG9538-PC 1..256 1..256 1388 100 Plus
Ag5r-PB 256 CG9538-PB 1..256 1..256 1388 100 Plus
Ag5r-PA 256 CG9538-PA 1..256 1..256 1388 100 Plus
Ag5r2-PA 254 CG9540-PA 9..253 10..253 637 50.4 Plus
CG9822-PA 263 CG9822-PA 6..263 4..256 419 36.9 Plus