Clone Sequence Records
BO07030.5prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-03
> BO07030.5prime
GAAGTTATCAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTC
TGGCATTTGGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGA
AGCACCAAGAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTG
TCCCAGTGACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCAC
TGGTGGCCAGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAAT
GCCAATCTGAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGA
ACTGGCTTACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACG
ACGGCTGCCACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCC
TGGATGGGCTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGG
CGTCGATATGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCG
ATGCCTATCCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTG
CTCGTTGCCGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTC
CGTGTCCGGCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGG
CCACCAATGTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCC
AGCAAGTGTACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGC
CAAGGAGGAGTACAACGTANACAACCTCTTCTATGCAAGCTTTCTAGACC
BO07030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9538-PA | 771 | Ag5r-RA | 1..768 | 17..784 | 3821 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r-RC | 1760 | CG9538-RC | 342..1109 | 17..784 | 3829 | 99.9 | Plus |
Ag5r-RB | 1446 | CG9538-RB | 28..795 | 17..784 | 3829 | 99.9 | Plus |
Ag5r-RA | 1011 | CG9538-RA | 28..795 | 17..784 | 3829 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14785315..14785965 | 784..134 | 3244 | 99.8 | Minus |
X | 23542271 | X | 14786093..14786210 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:13:22 has no hits.
BO07030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:10 Download gff for
BO07030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:31 Download gff for
BO07030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9538-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:21 Download gff for
BO07030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 25..801 | 14..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:41 Download gff for
BO07030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 25..801 | 14..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:41 Download gff for
BO07030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14785309..14785965 | 134..790 | 99 | <- | Minus |
X | 14786094..14786213 | 14..133 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:21 Download gff for
BO07030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14679342..14679998 | 134..790 | 99 | <- | Minus |
arm_X | 14680127..14680246 | 14..133 | 99 | | Minus |
BO07030.3prime Sequence
800 bp (799 high quality bases) assembled on 2005-12-03
> BO07030.3prime
ATGGTCTAGAAAGCTTGCATAGAAGAGGTTGTTTACGTTGTACTCCTCCT
TGGCGCTGCACAGATACTTGTACTTGGGATTGGTACCGGTGGTACACTTG
CTGGCCGCCTTGGAGCAGGAACTGTACATCTTGATGCCCAGAACATTGGT
GGCCGCATAGTTACAGGCCAGCAGGAAGGCCTTGTACGATTGGCCGGACA
CGGAGTACGTGGCCGCGGCACAACCCACTTCCGTATTCCGATCGGCAACG
AGCACCGTGAAATGTCCAATGGCCGGACCATTGTAGTTCGACGGATAGGC
ATCGATGTAGGCCTGTTTGGTGTACACCGCCTCATCGTACCACATATCGA
CGCCCCATTCTAGATAGTGTGTAACATTTAGCGGATTGTAGTAGCCCATC
CAGGCCAGATTCTGGCCAGACCAGTCGAAAGCATCCGTATTGTGGCAGCC
GTCGTGTTTCATTTGACAACTTTTCACGTTCAAACTGGCCAAGTAAGCCA
GTTCATCGTTCCACTTGATCGTGGCCATTCGACAGGCGGCACTCAGATTG
GCATTCAGTCCGCCGGCGATGTGGTTGCGATACTCGTTCGTCCTGGCCAC
CAGTGCATCCTTCTCAGCGCTGGAGAGGGTCAACAGGGTGGCGTCACTGG
GACAGCTTGAGGCCCAGGCTCCATTATTGTCGCATCCCAGATTCTTGGTG
CTTCCGCAGCTCTTTTTGCAATAATCGGTGGCGGAGGCGATGCCAAATGC
CAGAGATAGGCTAAATATGATCACGAAGTTGCGCATGTCGACTGATAACT
BO07030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9538-PA | 771 | Ag5r-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r-RC | 1760 | CG9538-RC | 342..1109 | 786..19 | 3840 | 100 | Minus |
Ag5r-RB | 1446 | CG9538-RB | 28..795 | 786..19 | 3840 | 100 | Minus |
Ag5r-RA | 1011 | CG9538-RA | 28..795 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14785315..14785965 | 19..669 | 3255 | 100 | Plus |
X | 23542271 | X | 14786093..14786210 | 669..786 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:12:56 has no hits.
BO07030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:09 Download gff for
BO07030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-PA | 1..771 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:30 Download gff for
BO07030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9538-PA | 1..771 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:20 Download gff for
BO07030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 25..801 | 13..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:36 Download gff for
BO07030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 25..801 | 13..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:36 Download gff for
BO07030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14785309..14785965 | 13..669 | 99 | <- | Plus |
X | 14786094..14786213 | 670..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:20 Download gff for
BO07030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14679342..14679998 | 13..669 | 99 | <- | Plus |
arm_X | 14680127..14680246 | 670..789 | 99 | | Plus |
BO07030.complete Sequence
802 bp (802 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630632
> BO07030.complete
GAAGTTATCAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTC
TGGCATTTGGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGA
AGCACCAAGAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTG
TCCCAGTGACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCAC
TGGTGGCCAGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAAT
GCCAATCTGAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGA
ACTGGCTTACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACG
ACGGCTGCCACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCC
TGGATGGGCTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGG
CGTCGATATGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCG
ATGCCTATCCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTG
CTCGTTGCCGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTC
CGTGTCCGGCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGG
CCACCAATGTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCC
AGCAAGTGTACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGC
CAAGGAGGAGTACAACGTAAACAACCTCTTCTATGCAAGCTTTCTAGACC
AT
BO07030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r-RC | 771 | CG9538-PC | 1..768 | 17..784 | 3840 | 100 | Plus |
Ag5r-RB | 771 | CG9538-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
Ag5r-RA | 771 | CG9538-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r-RC | 1760 | CG9538-RC | 342..1109 | 17..784 | 3840 | 100 | Plus |
Ag5r-RB | 1446 | CG9538-RB | 28..795 | 17..784 | 3840 | 100 | Plus |
Ag5r-RA | 1011 | CG9538-RA | 28..795 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14785315..14785965 | 784..134 | 3255 | 100 | Minus |
X | 23542271 | X | 14786093..14786210 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:47:41 has no hits.
BO07030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:56 Download gff for
BO07030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:46 Download gff for
BO07030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 21..797 | 14..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:07 Download gff for
BO07030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 28..795 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:56 Download gff for
BO07030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 21..797 | 14..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:39 Download gff for
BO07030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ag5r-RA | 28..795 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:39 Download gff for
BO07030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14785312..14785965 | 134..786 | 99 | <- | Minus |
X | 14786094..14786210 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:07 Download gff for
BO07030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14679345..14679998 | 134..786 | 99 | <- | Minus |
arm_X | 14680127..14680243 | 17..133 | 100 | | Minus |
BO07030.pep Sequence
Translation from 16 to 802
> BO07030.pep
MRNFVIIFSLSLAFGIASATDYCKKSCGSTKNLGCDNNGAWASSCPSDAT
LLTLSSAEKDALVARTNEYRNHIAGGLNANLSAACRMATIKWNDELAYLA
SLNVKSCQMKHDGCHNTDAFDWSGQNLAWMGYYNPLNVTHYLEWGVDMWY
DEAVYTKQAYIDAYPSNYNGPAIGHFTVLVADRNTEVGCAAATYSVSGQS
YKAFLLACNYAATNVLGIKMYSSCSKAASKCTTGTNPKYKYLCSAKEEYN
VNNLFYASFLDH
BO07030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ag5r-PC | 256 | CG9538-PC | 1..256 | 1..256 | 1388 | 100 | Plus |
Ag5r-PB | 256 | CG9538-PB | 1..256 | 1..256 | 1388 | 100 | Plus |
Ag5r-PA | 256 | CG9538-PA | 1..256 | 1..256 | 1388 | 100 | Plus |
Ag5r2-PA | 254 | CG9540-PA | 9..253 | 10..253 | 637 | 50.4 | Plus |
CG9822-PA | 263 | CG9822-PA | 6..263 | 4..256 | 419 | 36.9 | Plus |