Clone BO07033 Report

Search the DGRC for BO07033

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2f-RA
Protein status:BO07033.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO07033.3prime Sequence

542 bp (541 high quality bases) assembled on 2005-12-03

> BO07033.3prime
ATGGTCTAGAAAGCTTGCCACTGTGATTACAACGGGAACCTGGAAACAGA
TTAGGTTCTGATCGTTCGCATCCTTGGATTCCCACAACATGCTACCTTTC
ATCACCGGCAAAGTTTCGTTCACAAAGATATTGGCCCAATAGGCCTTTCC
ACCACTTGCGCTCTCTATGCATCCGTGATCTCCGTCGCAGGGATCGGGAG
TTATGGCCGCCTGGGTCTTGATGTAGTTAAACACCCATCGGACTTCGTGC
TTCAGAAAGCTGACGCCATTGCCATTATCATCGAAGCGCACAGTAACCTT
AATTGTCGCGTTCCGGGCCATGGAGCAGGGCAGTGTCGTACAGCTCTCGA
TGTCCAGGTAGCTGACCTGGTACAAAGAACCGCAATCCTCGAAGGGCAAA
GATCTTAGGGACAGATATTTTTTGTAAACAGCATCTCTGGTAGACTTGAT
CGTTCCGCCGGCCAATTCGTGGGCAGCGCAAATAACCAAGAGTATTTTTA
GATAGTAATCCATTAGGGCGCCGCGCATGTCGACTGATAACT

BO07033.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6164-PA 513 CG6164-RA 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 712 CG6164-RA 158..668 529..19 2555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24140526..24140696 273..103 855 100 Minus
3R 32079331 3R 24138052..24138202 529..379 755 100 Minus
3R 32079331 3R 24139778..24139887 381..272 550 100 Minus
3R 32079331 3R 24140808..24140892 103..19 425 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:12:33 has no hits.

BO07033.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:14 Download gff for BO07033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:37 Download gff for BO07033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:49 Download gff for BO07033.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..671 15..529 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:01 Download gff for BO07033.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..671 15..529 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:01 Download gff for BO07033.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24138052..24138200 381..529 100 -> Minus
3R 24139779..24139886 273..380 100 -> Minus
3R 24140527..24140696 103..272 100 -> Minus
3R 24140809..24140897 14..102 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:49 Download gff for BO07033.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19963774..19963922 381..529 100 -> Minus
arm_3R 19965501..19965608 273..380 100 -> Minus
arm_3R 19966249..19966418 103..272 100 -> Minus
arm_3R 19966531..19966619 14..102 96 -> Minus

BO07033.5prime Sequence

542 bp (541 high quality bases) assembled on 2005-12-03

> BO07033.5prime
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGGCAAGCTTTCTAGACC

BO07033.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6164-PA 513 CG6164-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 712 CG6164-RA 158..668 16..526 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24140526..24140696 272..442 855 100 Plus
3R 32079331 3R 24138052..24138202 16..166 755 100 Plus
3R 32079331 3R 24139778..24139887 164..273 550 100 Plus
3R 32079331 3R 24140808..24140892 442..526 425 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:14:09 has no hits.

BO07033.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:16 Download gff for BO07033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:38 Download gff for BO07033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6164-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:55 Download gff for BO07033.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..671 16..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:23 Download gff for BO07033.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 158..671 16..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:23 Download gff for BO07033.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24138052..24138200 16..164 100 -> Plus
3R 24139779..24139886 165..272 100 -> Plus
3R 24140527..24140696 273..442 100 -> Plus
3R 24140809..24140897 443..531 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:55 Download gff for BO07033.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19963774..19963922 16..164 100 -> Plus
arm_3R 19965501..19965608 165..272 100 -> Plus
arm_3R 19966249..19966418 273..442 100 -> Plus
arm_3R 19966531..19966619 443..531 96 -> Plus

BO07033.complete Sequence

544 bp (544 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630633

> BO07033.complete
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGGCAAGCTTTCTAGACCAT

BO07033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 513 CG6164-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-RA 712 CG6164-RA 158..668 16..526 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24140526..24140696 272..442 855 100 Plus
3R 32079331 3R 24138052..24138202 16..166 755 100 Plus
3R 32079331 3R 24139778..24139887 164..273 550 100 Plus
3R 32079331 3R 24140808..24140892 442..526 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:34:18 has no hits.

BO07033.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:44 Download gff for BO07033.complete
Subject Subject Range Query Range Percent Splice Strand
CG6164-RA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:04 Download gff for BO07033.complete
Subject Subject Range Query Range Percent Splice Strand
CG6164-RA 158..671 16..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:12 Download gff for BO07033.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 159..668 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:45 Download gff for BO07033.complete
Subject Subject Range Query Range Percent Splice Strand
CG6164-RA 158..671 16..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:33 Download gff for BO07033.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2f-RA 159..668 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:33 Download gff for BO07033.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24138053..24138200 17..164 100 -> Plus
3R 24139779..24139886 165..272 100 -> Plus
3R 24140527..24140696 273..442 100 -> Plus
3R 24140809..24140892 443..528 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:12 Download gff for BO07033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19963775..19963922 17..164 100 -> Plus
arm_3R 19965501..19965608 165..272 100 -> Plus
arm_3R 19966249..19966418 273..442 100 -> Plus
arm_3R 19966531..19966614 443..528 97   Plus

BO07033.pep Sequence

Translation from 16 to 544

> BO07033.pep
MRGALMDYYLKILLVICAAHELAGGTIKSTRDAVYKKYLSLRSLPFEDCG
SLYQVSYLDIESCTTLPCSMARNATIKVTVRFDDNGNGVSFLKHEVRWVF
NYIKTQAAITPDPCDGDHGCIESASGGKAYWANIFVNETLPVMKGSMLWE
SKDANDQNLICFQVPVVITVASFLDH

BO07033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2f-PA 170 CG6164-PA 1..170 1..170 904 100 Plus