Clone Sequence Records
BO07033.3prime Sequence
542 bp (541 high quality bases) assembled on 2005-12-03
> BO07033.3prime
ATGGTCTAGAAAGCTTGCCACTGTGATTACAACGGGAACCTGGAAACAGA
TTAGGTTCTGATCGTTCGCATCCTTGGATTCCCACAACATGCTACCTTTC
ATCACCGGCAAAGTTTCGTTCACAAAGATATTGGCCCAATAGGCCTTTCC
ACCACTTGCGCTCTCTATGCATCCGTGATCTCCGTCGCAGGGATCGGGAG
TTATGGCCGCCTGGGTCTTGATGTAGTTAAACACCCATCGGACTTCGTGC
TTCAGAAAGCTGACGCCATTGCCATTATCATCGAAGCGCACAGTAACCTT
AATTGTCGCGTTCCGGGCCATGGAGCAGGGCAGTGTCGTACAGCTCTCGA
TGTCCAGGTAGCTGACCTGGTACAAAGAACCGCAATCCTCGAAGGGCAAA
GATCTTAGGGACAGATATTTTTTGTAAACAGCATCTCTGGTAGACTTGAT
CGTTCCGCCGGCCAATTCGTGGGCAGCGCAAATAACCAAGAGTATTTTTA
GATAGTAATCCATTAGGGCGCCGCGCATGTCGACTGATAACT
BO07033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6164-PA | 513 | CG6164-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 712 | CG6164-RA | 158..668 | 529..19 | 2555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24140526..24140696 | 273..103 | 855 | 100 | Minus |
3R | 32079331 | 3R | 24138052..24138202 | 529..379 | 755 | 100 | Minus |
3R | 32079331 | 3R | 24139778..24139887 | 381..272 | 550 | 100 | Minus |
3R | 32079331 | 3R | 24140808..24140892 | 103..19 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:12:33 has no hits.
BO07033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:14 Download gff for
BO07033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:37 Download gff for
BO07033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:49 Download gff for
BO07033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..671 | 15..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:01 Download gff for
BO07033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..671 | 15..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:01 Download gff for
BO07033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24138052..24138200 | 381..529 | 100 | -> | Minus |
3R | 24139779..24139886 | 273..380 | 100 | -> | Minus |
3R | 24140527..24140696 | 103..272 | 100 | -> | Minus |
3R | 24140809..24140897 | 14..102 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:49 Download gff for
BO07033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19963774..19963922 | 381..529 | 100 | -> | Minus |
arm_3R | 19965501..19965608 | 273..380 | 100 | -> | Minus |
arm_3R | 19966249..19966418 | 103..272 | 100 | -> | Minus |
arm_3R | 19966531..19966619 | 14..102 | 96 | -> | Minus |
BO07033.5prime Sequence
542 bp (541 high quality bases) assembled on 2005-12-03
> BO07033.5prime
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGGCAAGCTTTCTAGACC
BO07033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6164-PA | 513 | CG6164-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 712 | CG6164-RA | 158..668 | 16..526 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24140526..24140696 | 272..442 | 855 | 100 | Plus |
3R | 32079331 | 3R | 24138052..24138202 | 16..166 | 755 | 100 | Plus |
3R | 32079331 | 3R | 24139778..24139887 | 164..273 | 550 | 100 | Plus |
3R | 32079331 | 3R | 24140808..24140892 | 442..526 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:14:09 has no hits.
BO07033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:16 Download gff for
BO07033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:38 Download gff for
BO07033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:55 Download gff for
BO07033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..671 | 16..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:23 Download gff for
BO07033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..671 | 16..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:23 Download gff for
BO07033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24138052..24138200 | 16..164 | 100 | -> | Plus |
3R | 24139779..24139886 | 165..272 | 100 | -> | Plus |
3R | 24140527..24140696 | 273..442 | 100 | -> | Plus |
3R | 24140809..24140897 | 443..531 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:55 Download gff for
BO07033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19963774..19963922 | 16..164 | 100 | -> | Plus |
arm_3R | 19965501..19965608 | 165..272 | 100 | -> | Plus |
arm_3R | 19966249..19966418 | 273..442 | 100 | -> | Plus |
arm_3R | 19966531..19966619 | 443..531 | 96 | -> | Plus |
BO07033.complete Sequence
544 bp (544 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630633
> BO07033.complete
GAAGTTATCAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAA
TACTCTTGGTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAG
TCTACCAGAGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCC
CTTCGAGGATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGA
GCTGTACGACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTT
ACTGTGCGCTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGA
AGTCCGATGGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCG
ATCCCTGCGACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAG
GCCTATTGGGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGG
TAGCATGTTGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTT
TCCAGGTTCCCGTTGTAATCACAGTGGCAAGCTTTCTAGACCAT
BO07033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 513 | CG6164-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 712 | CG6164-RA | 158..668 | 16..526 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24140526..24140696 | 272..442 | 855 | 100 | Plus |
3R | 32079331 | 3R | 24138052..24138202 | 16..166 | 755 | 100 | Plus |
3R | 32079331 | 3R | 24139778..24139887 | 164..273 | 550 | 100 | Plus |
3R | 32079331 | 3R | 24140808..24140892 | 442..526 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:18 has no hits.
BO07033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:44 Download gff for
BO07033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-RA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:02:04 Download gff for
BO07033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-RA | 158..671 | 16..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:12 Download gff for
BO07033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 159..668 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:45 Download gff for
BO07033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-RA | 158..671 | 16..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:33 Download gff for
BO07033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 159..668 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:33 Download gff for
BO07033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24138053..24138200 | 17..164 | 100 | -> | Plus |
3R | 24139779..24139886 | 165..272 | 100 | -> | Plus |
3R | 24140527..24140696 | 273..442 | 100 | -> | Plus |
3R | 24140809..24140892 | 443..528 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:12 Download gff for
BO07033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19963775..19963922 | 17..164 | 100 | -> | Plus |
arm_3R | 19965501..19965608 | 165..272 | 100 | -> | Plus |
arm_3R | 19966249..19966418 | 273..442 | 100 | -> | Plus |
arm_3R | 19966531..19966614 | 443..528 | 97 | | Plus |
BO07033.pep Sequence
Translation from 16 to 544
> BO07033.pep
MRGALMDYYLKILLVICAAHELAGGTIKSTRDAVYKKYLSLRSLPFEDCG
SLYQVSYLDIESCTTLPCSMARNATIKVTVRFDDNGNGVSFLKHEVRWVF
NYIKTQAAITPDPCDGDHGCIESASGGKAYWANIFVNETLPVMKGSMLWE
SKDANDQNLICFQVPVVITVASFLDH
BO07033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-PA | 170 | CG6164-PA | 1..170 | 1..170 | 904 | 100 | Plus |