Clone BO07035 Report

Search the DGRC for BO07035

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptcolt-RA
Protein status:BO07035.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO07035.3prime Sequence

900 bp (752 high quality bases) assembled on 2005-12-03

> BO07035.3prime
ATGGTCTAGAAAGCTTGCGAAATTTGGAGCTACGATGTTAAAGAATTTGT
TAGCCAGCTCAATGCCGAAGAAGCAGGCAGCGTTGGCTGGGAAGGCTCGG
AGCATGATGGGCGTTACGCCGCGGTACAAGGCCAGAGGTCCATCCTTGAC
AATCAGATCCTTGAAGACACTGCGTATGCCGTGCTTGTAGGTGCCTTCGG
GAGCCGATTGTAGGCGGCTCTTTAACACGTCGGCTGGCATGCCCAGAATC
CAGTAGGCCATGCCCGCCACTCCACCTGCGAAAATCGTTGAGGCAGTACT
GATTTGTCCCGTCTCTGACTTCGACTTGGCCACATCCTGCAGCGCCTCGT
AGACCAGGAAATACAGCCCGTTGGCGGGCAAATCCCTGAGCATTGTGGCG
CAGCTGCCCTTGAAAACGCTGCGAAGTCCACCCTCCTTGTATAGCTTGCC
GGCGCAGTCGATCATGCCGTTGTACTTGCGCTCGCCACCCTGACCCTGCT
GCGTCTGCAGGAGCACCTTGATGCGCTCGCCGGGTGCCATTATCAGGGTG
GAGAACAGGCCGGAGAAGGAGCCGGCCACGAAGATTTGCGGGTAGGTCAG
CTTGGCGTCCTCGCCGCGCTGCTGCAGCCGCTTGCCCAGCGCATAGCCGG
CGAAGCACATCGCAAAGATCGGAGCAACGCCCGTCAACGGTGCGGACATG
CCCTTGTACAGACCGCGGACGCCCTCATTTTTGATCGTCTTGGCCGCACA
GTCGAAGGTGCCGCGGTACAGAGGCTGCTCACCCGGCGCCGGACGCGGCA
TGGTCTGCAGGCGCACCTTGATGGTGTCCAGCGGATGGGCAGAGAGCACA
TTGCAGATCCCACCGAATCCGCCGGTCAGGAAGGACTTCACTGGATTCGC

BO07035.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3057-PA 921 colt-RA 37..918 900..19 4285 99.4 Minus
CG3057-PB 921 colt-RB 37..918 900..19 4285 99.4 Minus
CG3057-PC 921 colt-RC 37..918 900..19 4285 99.4 Minus
CG3057-PD 921 colt-RD 37..918 900..19 4285 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 1449 CG3057-RD 538..1419 900..19 4335 99.4 Minus
colt-RA 1480 CG3057-RA 541..1422 900..19 4335 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768648..2769529 19..900 4335 99.4 Plus
Blast to na_te.dros performed on 2015-02-09 19:25:40 has no hits.

BO07035.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:16 Download gff for BO07035.3prime
Subject Subject Range Query Range Percent Splice Strand
colt-PD 37..921 18..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:40 Download gff for BO07035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3057-PD 37..921 18..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:43 Download gff for BO07035.3prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 541..1428 10..900 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:17 Download gff for BO07035.3prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 541..1428 10..900 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:17 Download gff for BO07035.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2768642..2769529 10..900 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:43 Download gff for BO07035.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2768642..2769529 10..900 98   Plus

BO07035.5prime Sequence

851 bp (754 high quality bases) assembled on 2005-12-03

> BO07035.5prime
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
C

BO07035.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3057-PA 921 colt-RA 1..835 17..851 4100 99.6 Plus
CG3057-PB 921 colt-RB 1..835 17..851 4100 99.6 Plus
CG3057-PC 921 colt-RC 1..835 17..851 4100 99.6 Plus
CG3057-PD 921 colt-RD 1..835 17..851 4100 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 1449 CG3057-RD 501..1336 16..851 4135 99.6 Plus
colt-RA 1480 CG3057-RA 504..1339 16..851 4135 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768731..2769566 851..16 4135 99.6 Minus
Blast to na_te.dros performed on 2015-02-12 09:53:11 has no hits.

BO07035.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:17 Download gff for BO07035.5prime
Subject Subject Range Query Range Percent Splice Strand
colt-PD 1..835 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:41 Download gff for BO07035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3057-PD 1..835 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:13 Download gff for BO07035.5prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 499..1339 11..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:07 Download gff for BO07035.5prime
Subject Subject Range Query Range Percent Splice Strand
colt-RA 499..1339 11..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:07 Download gff for BO07035.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2768731..2769571 11..851 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:13 Download gff for BO07035.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2768731..2769571 11..851 99   Minus

BO07035.complete Sequence

952 bp (952 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630634

> BO07035.complete
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
CTCCGAGCCTTCCCAGCCAACGCTGCCTGCTTCTTCGGCATTGAGCTGGC
TAACAAATTCTTTAACATCGTAGCTCCAAATTTCGCAAGCTTTCTAGACC
AT

BO07035.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 921 CG3057-PD 1..918 17..934 4530 99.6 Plus
colt-RA 921 CG3057-PA 1..918 17..934 4530 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
colt-RD 1449 CG3057-RD 501..1419 16..934 4535 99.6 Plus
colt-RA 1480 CG3057-RA 504..1422 16..934 4535 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768648..2769566 934..16 4535 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 15:34:31 has no hits.

BO07035.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:47 Download gff for BO07035.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RC 1..921 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:23 Download gff for BO07035.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RC 496..1425 11..943 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:12 Download gff for BO07035.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RA 505..1422 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:48 Download gff for BO07035.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RC 496..1425 11..943 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:13 Download gff for BO07035.complete
Subject Subject Range Query Range Percent Splice Strand
colt-RA 505..1422 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:13 Download gff for BO07035.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2768646..2769565 17..936 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:12 Download gff for BO07035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2768646..2769565 17..936 99   Minus

BO07035.pep Sequence

Translation from 16 to 952

> BO07035.pep
MTTTENVSTERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPA
PGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYAL
GKRLQQRGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQG
GERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQ
DVAKSKSETGQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEGTY
KHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELANKFFN
IVAPNFASFLDH

BO07035.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
colt-PD 306 CG3057-PD 1..306 1..306 1587 100 Plus
colt-PA 306 CG3057-PA 1..306 1..306 1587 100 Plus
CG3476-PA 299 CG3476-PA 6..294 7..296 978 62.8 Plus
CG4995-PD 360 CG4995-PD 2..264 16..290 397 36.4 Plus
CG4995-PC 360 CG4995-PC 2..264 16..290 397 36.4 Plus
CG4995-PD 360 CG4995-PD 97..276 19..206 205 29.3 Plus
CG3476-PA 299 CG3476-PA 118..299 19..205 162 27.7 Plus