Clone Sequence Records
BO07035.3prime Sequence
900 bp (752 high quality bases) assembled on 2005-12-03
> BO07035.3prime
ATGGTCTAGAAAGCTTGCGAAATTTGGAGCTACGATGTTAAAGAATTTGT
TAGCCAGCTCAATGCCGAAGAAGCAGGCAGCGTTGGCTGGGAAGGCTCGG
AGCATGATGGGCGTTACGCCGCGGTACAAGGCCAGAGGTCCATCCTTGAC
AATCAGATCCTTGAAGACACTGCGTATGCCGTGCTTGTAGGTGCCTTCGG
GAGCCGATTGTAGGCGGCTCTTTAACACGTCGGCTGGCATGCCCAGAATC
CAGTAGGCCATGCCCGCCACTCCACCTGCGAAAATCGTTGAGGCAGTACT
GATTTGTCCCGTCTCTGACTTCGACTTGGCCACATCCTGCAGCGCCTCGT
AGACCAGGAAATACAGCCCGTTGGCGGGCAAATCCCTGAGCATTGTGGCG
CAGCTGCCCTTGAAAACGCTGCGAAGTCCACCCTCCTTGTATAGCTTGCC
GGCGCAGTCGATCATGCCGTTGTACTTGCGCTCGCCACCCTGACCCTGCT
GCGTCTGCAGGAGCACCTTGATGCGCTCGCCGGGTGCCATTATCAGGGTG
GAGAACAGGCCGGAGAAGGAGCCGGCCACGAAGATTTGCGGGTAGGTCAG
CTTGGCGTCCTCGCCGCGCTGCTGCAGCCGCTTGCCCAGCGCATAGCCGG
CGAAGCACATCGCAAAGATCGGAGCAACGCCCGTCAACGGTGCGGACATG
CCCTTGTACAGACCGCGGACGCCCTCATTTTTGATCGTCTTGGCCGCACA
GTCGAAGGTGCCGCGGTACAGAGGCTGCTCACCCGGCGCCGGACGCGGCA
TGGTCTGCAGGCGCACCTTGATGGTGTCCAGCGGATGGGCAGAGAGCACA
TTGCAGATCCCACCGAATCCGCCGGTCAGGAAGGACTTCACTGGATTCGC
BO07035.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3057-PA | 921 | colt-RA | 37..918 | 900..19 | 4285 | 99.4 | Minus |
CG3057-PB | 921 | colt-RB | 37..918 | 900..19 | 4285 | 99.4 | Minus |
CG3057-PC | 921 | colt-RC | 37..918 | 900..19 | 4285 | 99.4 | Minus |
CG3057-PD | 921 | colt-RD | 37..918 | 900..19 | 4285 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 1449 | CG3057-RD | 538..1419 | 900..19 | 4335 | 99.4 | Minus |
colt-RA | 1480 | CG3057-RA | 541..1422 | 900..19 | 4335 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768648..2769529 | 19..900 | 4335 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:25:40 has no hits.
BO07035.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:16 Download gff for
BO07035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-PD | 37..921 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:40 Download gff for
BO07035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3057-PD | 37..921 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:43 Download gff for
BO07035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 541..1428 | 10..900 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:17 Download gff for
BO07035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 541..1428 | 10..900 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:17 Download gff for
BO07035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2768642..2769529 | 10..900 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:43 Download gff for
BO07035.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2768642..2769529 | 10..900 | 98 | | Plus |
BO07035.5prime Sequence
851 bp (754 high quality bases) assembled on 2005-12-03
> BO07035.5prime
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
C
BO07035.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3057-PA | 921 | colt-RA | 1..835 | 17..851 | 4100 | 99.6 | Plus |
CG3057-PB | 921 | colt-RB | 1..835 | 17..851 | 4100 | 99.6 | Plus |
CG3057-PC | 921 | colt-RC | 1..835 | 17..851 | 4100 | 99.6 | Plus |
CG3057-PD | 921 | colt-RD | 1..835 | 17..851 | 4100 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 1449 | CG3057-RD | 501..1336 | 16..851 | 4135 | 99.6 | Plus |
colt-RA | 1480 | CG3057-RA | 504..1339 | 16..851 | 4135 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768731..2769566 | 851..16 | 4135 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:53:11 has no hits.
BO07035.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:17 Download gff for
BO07035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-PD | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:41 Download gff for
BO07035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3057-PD | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:13 Download gff for
BO07035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 499..1339 | 11..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:07 Download gff for
BO07035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 499..1339 | 11..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:07 Download gff for
BO07035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2768731..2769571 | 11..851 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:13 Download gff for
BO07035.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2768731..2769571 | 11..851 | 99 | | Minus |
BO07035.complete Sequence
952 bp (952 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630634
> BO07035.complete
GAAGTTATCAGTCGACATGACCACCACGGAGAACGTGTCCACGGAGCGCA
AAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGATCTGC
AATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGAC
CATGCCGCGTCCGGCGCCGGGTGAGCAGCCTCTGTACCGCGGCACCTTCG
ACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAG
GGCATGTCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTT
CGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCGCGGCGAGGACGCCA
AGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTC
TCCACCCTGATAATGGCACCCGGCGAGCGCATCAAGGTGCTCCTGCAGAC
GCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGACTGCG
CCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGC
TGCGCCACAATGCTCAGGGATTTGCCCGCCAACGGGCTGTATTTCCTGGT
CTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAA
TCAGTACTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTAC
TGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGCCGCCTACAATCGGC
TCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGA
TTGTCAAGGATGGACCTCTGGCCTTGTACCGCGGCGTAACGCCCATCATG
CTCCGAGCCTTCCCAGCCAACGCTGCCTGCTTCTTCGGCATTGAGCTGGC
TAACAAATTCTTTAACATCGTAGCTCCAAATTTCGCAAGCTTTCTAGACC
AT
BO07035.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 921 | CG3057-PD | 1..918 | 17..934 | 4530 | 99.6 | Plus |
colt-RA | 921 | CG3057-PA | 1..918 | 17..934 | 4530 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-RD | 1449 | CG3057-RD | 501..1419 | 16..934 | 4535 | 99.6 | Plus |
colt-RA | 1480 | CG3057-RA | 504..1422 | 16..934 | 4535 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768648..2769566 | 934..16 | 4535 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:34:31 has no hits.
BO07035.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:47 Download gff for
BO07035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RC | 1..921 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:23 Download gff for
BO07035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RC | 496..1425 | 11..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:12 Download gff for
BO07035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 505..1422 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:48 Download gff for
BO07035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RC | 496..1425 | 11..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:13 Download gff for
BO07035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
colt-RA | 505..1422 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:13 Download gff for
BO07035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2768646..2769565 | 17..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:12 Download gff for
BO07035.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2768646..2769565 | 17..936 | 99 | | Minus |
BO07035.pep Sequence
Translation from 16 to 952
> BO07035.pep
MTTTENVSTERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPA
PGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYAL
GKRLQQRGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQG
GERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQ
DVAKSKSETGQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEGTY
KHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELANKFFN
IVAPNFASFLDH
BO07035.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
colt-PD | 306 | CG3057-PD | 1..306 | 1..306 | 1587 | 100 | Plus |
colt-PA | 306 | CG3057-PA | 1..306 | 1..306 | 1587 | 100 | Plus |
CG3476-PA | 299 | CG3476-PA | 6..294 | 7..296 | 978 | 62.8 | Plus |
CG4995-PD | 360 | CG4995-PD | 2..264 | 16..290 | 397 | 36.4 | Plus |
CG4995-PC | 360 | CG4995-PC | 2..264 | 16..290 | 397 | 36.4 | Plus |
CG4995-PD | 360 | CG4995-PD | 97..276 | 19..206 | 205 | 29.3 | Plus |
CG3476-PA | 299 | CG3476-PA | 118..299 | 19..205 | 162 | 27.7 | Plus |