Clone Sequence Records
BO07036.3prime Sequence
874 bp (739 high quality bases) assembled on 2005-12-03
> BO07036.3prime
ATGGTCTAGAAAGCTTGCCTTCATTCGCTTCACTTTACCAGGAGCGCTTG
GTATCTTTTTCAGTACGTTGGGAATCCATTTCAGTAAATCGTCGTGTGTT
AGCTGAAAATCACTGTCTGCCCACAAAAGTTTCAGTTCATCCATCACCAA
ACCAAGCCTCATTCCGTTCAGACCACGCTGAGCCAAAGCATTTCCCCTGA
TCGGGAAGTCCGGCTTGACCCACGACTTGAGCTGGTTGTAAAGTTCCAGT
TTGCCAGAGTATTTCAGCAACTGTTCTACGAAATCCCTTTGAATGTACTT
TTGTAAGCACAACTTCTGATAGTCACGCAGGGTCGTGTACTGTGAGCCAA
CCTTCTCCCGCTCCTGGGTAATGAACCTAGCCAGGTCTCGTTCGTAGGCG
GATAGCTTCAGGCGTTTGTGCATTTCCATGGCGTCTTCCACGGAGTGCAG
CATCCCTGCCAAGTACAAAATCGGCTGATGTGGCTTTTCAAATTGATCTA
GCGCTTTGCAAAGCCGGTCGAACTCATCCAGATATGGCTCTTTAGGCAGC
CCAATGTACTCGAATAGGTTACAACGGTGCATCTCCAGAAACAATGCGGC
TCCGAAATTTCCCGGCACTATCTTTTGGAGCTCAGACCAGATCCGCTCGC
CACTTATTCTCGCAAGACCTTTCGCGTTTTCCTTTATGGCTGCCAGGGTG
GCCTTATCGTGGTTGTTTTCCTCACTTGCGATGCGTCCGTAGAATCGGAA
ATAGCGCAGGATGCGCAGAAAATCCTCCTTAATGCGAATATCTGCTTCGC
CCACGAAGACCACGCGACGCTCCTGGAGATCATCGTAGCCATAGAAGTAA
TCGTACACGGTGCCATCAAAGCCT
BO07036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-PA | 1434 | CG2100-RA | 576..1431 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1597 | CG2100-RB | 675..1530 | 874..19 | 4280 | 100 | Minus |
| CG2100-RA | 1586 | CG2100-RA | 675..1530 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5735157..5735681 | 350..874 | 2625 | 100 | Plus |
| 3R | 32079331 | 3R | 5734765..5735099 | 19..353 | 1675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:57:40 has no hits.
BO07036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:19 Download gff for
BO07036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 576..1434 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:42 Download gff for
BO07036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 576..1434 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:45 Download gff for
BO07036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 675..1530 | 19..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:40 Download gff for
BO07036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 675..1530 | 19..874 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:40 Download gff for
BO07036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5734765..5735097 | 19..351 | 100 | <- | Plus |
| 3R | 5735159..5735681 | 352..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:45 Download gff for
BO07036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1560487..1560819 | 19..351 | 100 | <- | Plus |
| arm_3R | 1560881..1561403 | 352..874 | 100 | | Plus |
BO07036.5prime Sequence
881 bp (759 high quality bases) assembled on 2005-12-03
> BO07036.5prime
GAAGTTATCAGTCGACATGAATGGACCAAGCCTCCTCGTAAAGTTGACCA
CACGTGCCTTCCTGTTATTCAACGGTCGCCCCCAGAATCGCTGGCTAAAG
TCGATGGCCAATAGTATGGTTTGCTCGCGAGGCGTCTCTCCAGAATTGAT
TGCCCAGCTGGGAAAACCACCTAGGATGCGCACAAACCCGGCATTCCGGA
AGGTGGCAACTCCTGAGTTCAAAAGCATATTTACCCCCGAGCTGAATGAC
CTTGTGGCGCTCTTTAAGAAGTACGACTACGAGCTGCGGATCGCCGGCGG
AGCTGTGCGCGACATTCTGATGGGCATTCCACCGAAGGACATCGACTTGG
CCACCACCGCCACTCCGGATCAGATGAAGCAGATGTTTGAGAAGGAGGAG
GTGCGAATGATAAACGCAAACGGCGAAAAGCACGGCACCATCACTCCTAG
AATCAATGACAAGGAGAACTTCGAGGTGACCACATTACGCATCGACATCC
GCACCGATGGACGCCATGCGGAGGTGATGTACACGACTGACTGGCAACTG
GATGCGAACCGCCGCGATTTGACAATCAACTCTATGTTCTTAGGCTTTGA
TGGCACCGTGTACGATTACTTCTATGGCTACGATGATCTCCAGGAGCGTC
GCGTGGTCTTCGTGGGCGAAGCAGATATTCGCATTAAGGAGGATTTTCTG
CGCATCCTGCGCTATTTCCGATTCTACGGACGCATCGCAAGTGAGGAAAA
CAACCACGATAAGGCCACCCTGGCAGCCATAAAGGAAAACGCGAAAGGTC
TTGCGAGAATAAGTGGCGAGCGGATCTGGTCTGAGCTCCAAAAGATAGTG
CCGGGAAATTTCGGAGCCGCATTGTTTCTGG
BO07036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-PA | 1434 | CG2100-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1597 | CG2100-RB | 98..964 | 15..881 | 4335 | 100 | Plus |
| CG2100-RA | 1586 | CG2100-RA | 98..964 | 15..881 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5735392..5736258 | 881..15 | 4335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:58:06 has no hits.
BO07036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:20 Download gff for
BO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:44 Download gff for
BO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:46 Download gff for
BO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 92..964 | 6..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:29 Download gff for
BO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 92..964 | 6..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:29 Download gff for
BO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5735392..5736264 | 6..881 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:46 Download gff for
BO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1561114..1561986 | 6..881 | 99 | | Minus |
BO07036.complete Sequence
1465 bp (1465 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630635
> BO07036.complete
GAAGTTATCAGTCGACATGAATGGACCAAGCCTCCTCGTAAAGTTGACCA
CACGTGCCTTCCTGTTATTCAACGGTCGCCCCCAGAATCGCTGGCTAAAG
TCGATGGCCAATAGTATGGTTTGCTCGCGAGGCGTCTCTCCAGAATTGAT
TGCCCAGCTGGGAAAACCACCTAGGATGCGCACAAACCCGGCATTCCGGA
AGGTGGCAACTCCTGAGTTCAAAAGCATATTTACCCCCGAGCTGAATGAC
CTTGTGGCGCTCTTTAAGAAGTACGACTACGAGCTGCGGATCGCCGGCGG
AGCTGTGCGCGACATTCTGATGGGCATTCCACCGAAGGACATCGACTTGG
CCACCACCGCCACTCCGGATCAGATGAAGCAGATGTTTGAGAAGGAGGAG
GTGCGAATGATAAACGCAAACGGCGAAAAGCACGGCACCATCACTCCTAG
AATCAATGACAAGGAGAACTTCGAGGTGACCACATTACGCATCGACATCC
GCACCGATGGACGCCATGCGGAGGTGATGTACACGACTGACTGGCAACTG
GATGCGAACCGCCGCGATTTGACAATCAACTCTATGTTCTTAGGCTTTGA
TGGCACCGTGTACGATTACTTCTATGGCTACGATGATCTCCAGGAGCGTC
GCGTGGTCTTCGTGGGCGAAGCAGATATTCGCATTAAGGAGGATTTTCTG
CGCATCCTGCGCTATTTCCGATTCTACGGACGCATCGCAAGTGAGGAAAA
CAACCACGATAAGGCCACCCTGGCAGCCATAAAGGAAAACGCGAAAGGTC
TTGCGAGAATAAGTGGCGAGCGGATCTGGTCTGAGCTCCAAAAGATAGTG
CCGGGAAATTTCGGAGCCGCATTGTTTCTGGAGATGCACCGTTGTAACCT
ATTCGAGTACATTGGGCTGCCTAAAGAGCCATATCTGGATGAGTTCGACC
GGCTTTGCAAAGCGCTAGATCAATTTGAAAAGCCACATCAGCCGATTTTG
TACTTGGCAGGGATGCTGCACTCCGTGGAAGACGCCATGGAAATGCACAA
ACGCCTGAAGCTATCCGCCTACGAACGAGACCTGGCTAGGTTCATTACCC
AGGAGCGGGAGAAGGTTGGCTCACAGTACACGACCCTGCGTGACTATCAG
AAGTTGTGCTTACAAAAGTACATTCAAAGGGATTTCGTAGAACAGTTGCT
GAAATACTCTGGCAAACTGGAACTTTACAACCAGCTCAAGTCGTGGGTCA
AGCCGGACTTCCCGATCAGGGGAAATGCTTTGGCTCAGCGTGGTCTGAAC
GGAATGAGGCTTGGTTTGGTGATGGATGAACTGAAACTTTTGTGGGCAGA
CAGTGATTTTCAGCTAACACACGACGATTTACTGAAATGGATTCCCAACG
TACTGAAAAAGATACCAAGCGCTCCTGGTAAAGTGAAGCGAATGAAGGCA
AGCTTTCTAGACCAT
BO07036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1434 | CG2100-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
| CG2100-RA | 1434 | CG2100-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-RB | 1597 | CG2100-RB | 98..1530 | 15..1447 | 7165 | 100 | Plus |
| CG2100-RA | 1586 | CG2100-RA | 98..1530 | 15..1447 | 7165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5735157..5736258 | 1116..15 | 5510 | 100 | Minus |
| 3R | 32079331 | 3R | 5734765..5735099 | 1447..1113 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:15:18 has no hits.
BO07036.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:24 Download gff for
BO07036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 1..1434 | 17..1448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:42:11 Download gff for
BO07036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 133..1571 | 6..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:07 Download gff for
BO07036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 100..1530 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:25 Download gff for
BO07036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 133..1571 | 6..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:44 Download gff for
BO07036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2100-RA | 100..1530 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:44 Download gff for
BO07036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5734763..5735097 | 1115..1449 | 99 | <- | Minus |
| 3R | 5735159..5736256 | 17..1114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:07 Download gff for
BO07036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1560485..1560819 | 1115..1449 | 99 | <- | Minus |
| arm_3R | 1560881..1561978 | 17..1114 | 100 | | Minus |
BO07036.pep Sequence
Translation from 16 to 1465
> BO07036.pep
MNGPSLLVKLTTRAFLLFNGRPQNRWLKSMANSMVCSRGVSPELIAQLGK
PPRMRTNPAFRKVATPEFKSIFTPELNDLVALFKKYDYELRIAGGAVRDI
LMGIPPKDIDLATTATPDQMKQMFEKEEVRMINANGEKHGTITPRINDKE
NFEVTTLRIDIRTDGRHAEVMYTTDWQLDANRRDLTINSMFLGFDGTVYD
YFYGYDDLQERRVVFVGEADIRIKEDFLRILRYFRFYGRIASEENNHDKA
TLAAIKENAKGLARISGERIWSELQKIVPGNFGAALFLEMHRCNLFEYIG
LPKEPYLDEFDRLCKALDQFEKPHQPILYLAGMLHSVEDAMEMHKRLKLS
AYERDLARFITQEREKVGSQYTTLRDYQKLCLQKYIQRDFVEQLLKYSGK
LELYNQLKSWVKPDFPIRGNALAQRGLNGMRLGLVMDELKLLWADSDFQL
THDDLLKWIPNVLKKIPSAPGKVKRMKASFLDH
BO07036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2100-PB | 477 | CG2100-PB | 1..477 | 1..477 | 2494 | 100 | Plus |
| CG2100-PA | 477 | CG2100-PA | 1..477 | 1..477 | 2494 | 100 | Plus |
