Clone Sequence Records
BO07037.3prime Sequence
953 bp (828 high quality bases) assembled on 2005-12-03
> BO07037.3prime
ATGGTCTAGAAAGCTTGCGGCCTTCCGGAAGATGTCGCTGGATCCGTAGG
ACAGGCGACGTTCCTTGGTATTGCTGGTGACCAGCACCTCCTCGTCGAAC
TGCGACACCCGCTGCATTTTCGGTCGCATCAGTCCACGTACATCGTTCAG
CGATATATCAATATCTCTGAACGCGTTGAGCAGGAACACAGCTGTGATAA
CGATCAGGAAGCCGCACACATCGCCGAGAATATCATCGAACCGCATGTGG
GTGAACTCCTTGAAGAGGATGGCAGACGCAGCTATCACCAGGGTGGTGAA
CATTACATAGTACACTGGAGTAACTATACTAGTATTGAATATATCCAGCG
CCTTGTTCAGATAGTTCATCTGGATGGCTATGAAAGTGACGGTGACCAGG
ATCAGGAACCATGGCATCCATGTGAGGAAGACGTTGCCTCCGTTATTCAG
CGTCTGCCGTATGGCTAGGCCCAATGCCTTGCAGGACATCACAGTCAGAG
ATCCGATGCCGGAGCACAAGAAGATATAAACTACCACATTGGTGTGCCCA
TGCCGTGGTGCAATGAAGCAGGCCACAAACACCGTGGAACCGACGATGCA
GATCACGTATAGAATGAAAACCGGATCCAAAAGCATATCGAATAGCAGCT
GCAAATCCTCGATCTCCTTCTCTTTGGGCGAGTGAATCACAATGATGGTG
GATCCCAGTATGCACAGAAAGCAGCCGATCTTCCCCAGCAAGTTTAGCTT
CTCGTTGAGGAATCTGGAGGCCATCACGGCTGAGATGATAACACTCAGCG
CGCCTAACGGAGTGACCAATGAAGCGGGGGGCAAGGCGTAGGCCGCAAAG
TTGGCCGCTTCTCCCACACCATTGTCAGAAGGCCCGCCCCACAGATCCAC
TCCCTCAAATATCAAATCCTCCAGCTGACGCCCGCACCCTCGCGTACCTG
CTC
BO07037.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12292-PA | 1158 | CG12292-RA | 304..1155 | 870..19 | 4110 | 99.2 | Minus |
| CG12292-PA | 1158 | CG12292-RA | 260..304 | 913..869 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spict-RB | 1461 | CG12292-RB | 286..1222 | 953..19 | 4440 | 98.5 | Minus |
| spict-RA | 1461 | CG12292-RA | 286..1222 | 953..19 | 4440 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12705593..12706444 | 870..19 | 4170 | 99.3 | Minus |
| 2L | 23513712 | 2L | 12705010..12705092 | 953..872 | 245 | 89.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:54:28 has no hits.
BO07037.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:21 Download gff for
BO07037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12292-PA | 219..1158 | 16..953 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:45 Download gff for
BO07037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12292-PA | 219..1158 | 16..953 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:41 Download gff for
BO07037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 286..1222 | 19..953 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:24 Download gff for
BO07037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 286..1222 | 19..953 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:24 Download gff for
BO07037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12705010..12705092 | 872..953 | 91 | -> | Minus |
| 2L | 12705591..12706444 | 19..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:41 Download gff for
BO07037.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12705010..12705092 | 872..953 | 91 | -> | Minus |
| arm_2L | 12705591..12706444 | 19..871 | 99 | | Minus |
BO07037.5prime Sequence
889 bp (807 high quality bases) assembled on 2005-12-03
> BO07037.5prime
GAAGTTATCAGTCGACATGAACAGCGACGGCGAAGCCTCATCACTGCAGA
TGCCCCAGGTGACGGTGGGTGGCATGCTGCCGGTAGAAGCCAACCAATCG
CCTGAAACCGCTCCGCTTTCGATGGCGGAGACGGTGTCCAACACGGACTT
CTACATCGGCGTTGGCCTGGCTATCTCCTCCTGCTTCTTCATCGGTTCCA
GCTTCATCATCAAAAAGAAGGCACTCATTCGGCTGAGCAGGTACGGCGAG
GTGCGGGCGTCAGCTGGAGGATTTGGATATCTGAGGGAGTGGATCTGGTG
GGCGGGCCTTCTGACAATGGGTGTGGGAGAAGCGGCCAACTTTGCGGCCT
ACGCCTTTGCCCCCGCTTCATTGGTCACTCCGTTAGGCGCGCTGAGTGTT
ATCATCTCAGCCGTGATGGCCTCCAGATTCCTCAACGAGAAGCTAAACTT
GCTGGGGAAGATCGGCTGCTTTCTGTGCATACTGGGATCCACCATCATTG
TGATTCACTCGCCCAAAGAGAAGGAGATCGAGGATTTGCAGCTGCTATTC
GATATGCTTTTGGATCCGGTTTTCATTCTATACGTGATCTGCATCGTCGG
TTCCACGGTGTTTGTGGCCTGCTTCATTGCACCACGGCATGGGCACACCA
ATGTGGTAGTTTATATCTTCTTGTGCTCCGGCATCGGATCTCTGACTGTG
ATGTCCTGCAAGGCATTGGGCCTAGCCATACGGCAGACGCTGAATAACGG
AGGCAACGTCTTCCTCACATGGATGCCATGGTTCCTGATCCTGGTCACCG
TCACTTTCATAGCCATCCAGATGAACTATCTGAACAAGGCGCTGGATATA
TTCAATACTAGTATAGTTACTTCAGTGTACTATGTAAAT
BO07037.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12292-PA | 1158 | CG12292-RA | 1..871 | 17..887 | 4205 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spict-RB | 1461 | CG12292-RB | 68..938 | 17..887 | 4265 | 99.3 | Plus |
| spict-RA | 1461 | CG12292-RA | 68..938 | 17..887 | 4265 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12705582..12706160 | 309..887 | 2820 | 99.1 | Plus |
| 2L | 23513712 | 2L | 12704792..12705092 | 17..317 | 1460 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:25:54 has no hits.
BO07037.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:21 Download gff for
BO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12292-PA | 1..872 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:46 Download gff for
BO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12292-PA | 1..872 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:44 Download gff for
BO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 61..939 | 7..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:19 Download gff for
BO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 61..939 | 7..889 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:19 Download gff for
BO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12704785..12705092 | 7..317 | 97 | -> | Plus |
| 2L | 12705591..12706161 | 318..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:44 Download gff for
BO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12704785..12705092 | 7..317 | 97 | -> | Plus |
| arm_2L | 12705591..12706161 | 318..889 | 99 | | Plus |
BO07037.complete Sequence
1189 bp (1189 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630636
> BO07037.complete
GAAGTTATCAGTCGACATGAACAGCGACGGCGAAGCCTCATCACTGCAGA
TGCCCCAGGTGACGGTGGGTGGCATGCTGCCGGTAGAAGCCAACCAATCG
CCTGAAACCGCTCCGCTTTCGATGGCGGAGACGGTGTCCAACACGGACTT
CTACATCGGCGTTGGCCTGGCTATCTCCTCCTGCTTCTTCATCGGTTCCA
GCTTCATCATCAAAAAGAAGGCACTCATTCGGCTGAGCAGGTACGGCGAG
GTGCGGGCGTCAGCTGGAGGATTTGGATATCTGAGGGAGTGGATCTGGTG
GGCGGGCCTTCTGACAATGGGTGTGGGAGAAGCGGCCAACTTTGCGGCCT
ACGCCTTTGCCCCCGCTTCATTGGTCACTCCGTTAGGCGCGCTGAGTGTT
ATCATCTCAGCCGTGATGGCCTCCAGATTCCTCAACGAGAAGCTAAACTT
GCTGGGGAAGATCGGCTGCTTTCTGTGCATACTGGGATCCACCATCATTG
TGATTCACTCGCCCAAAGAGAAGGAGATCGAGGATTTGCAGCTGCTATTC
GATATGCTTTTGGATCCGGTTTTCATTCTATACGTGATCTGCATCGTCGG
TTCCACGGTGTTTGTGGCCTGCTTCATTGCACCACGGCATGGGCACACCA
ATGTGGTAGTTTATATCTTCTTGTGCTCCGGCATCGGATCTCTGACTGTG
ATGTCCTGCAAGGCATTGGGCCTAGCCATACGGCAGACGCTGAATAACGG
AGGCAACGTCTTCCTCACATGGATGCCATGGTTCCTGATCCTGGTCACCG
TCACTTTCATAGCCATCCAGATGAACTATCTGAACAAGGCGCTGGATATA
TTCAATACTAGTATAGTTACTCCAGTGTACTATGTAATGTTCACCACCCT
GGTGATAGCTGCGTCTGCCATCCTCTTCAAGGAGTTCACCCACATGCGGT
TCGATGATATTCTCGGCGATGTGTGCGGCTTCCTGATCGTTATCACAGCT
GTGTTCCTGCTCAACGCGTTCAGAGATATTGATATATCGCTGAACGATGT
ACGTGGACTGATGCGACCGAAAATGCAGCGGGTGTCGCAGTTCGACGAGG
AGGTGCTGGTCACCAGCAATACCAAGGAACGTCGCCTGTCCTACGGATCC
AGCGACATCTTCCGGAAGGCCGCAAGCTTTCTAGACCAT
BO07037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spict-RB | 1182 | CG12292-PB | 1..1155 | 17..1171 | 5670 | 99.4 | Plus |
| spict-RA | 1158 | CG12292-PA | 1..1155 | 17..1171 | 5670 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spict-RB | 1461 | CG12292-RB | 68..1222 | 17..1171 | 5670 | 99.4 | Plus |
| spict-RA | 1461 | CG12292-RA | 68..1222 | 17..1171 | 5670 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12705582..12706444 | 309..1171 | 4225 | 99.3 | Plus |
| 2L | 23513712 | 2L | 12704792..12705092 | 17..317 | 1460 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:37:25 has no hits.
BO07037.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:49 Download gff for
BO07037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 1..1158 | 17..1174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:25 Download gff for
BO07037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 63..1224 | 7..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:20 Download gff for
BO07037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 68..1222 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:49 Download gff for
BO07037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 63..1224 | 7..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:06 Download gff for
BO07037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spict-RA | 68..1222 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:06 Download gff for
BO07037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12704792..12705092 | 17..317 | 99 | -> | Plus |
| 2L | 12705591..12706444 | 318..1173 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:20 Download gff for
BO07037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12704792..12705092 | 17..317 | 99 | -> | Plus |
| arm_2L | 12705591..12706444 | 318..1173 | 99 | | Plus |
BO07037.pep Sequence
Translation from 16 to 1189
> BO07037.pep
MNSDGEASSLQMPQVTVGGMLPVEANQSPETAPLSMAETVSNTDFYIGVG
LAISSCFFIGSSFIIKKKALIRLSRYGEVRASAGGFGYLREWIWWAGLLT
MGVGEAANFAAYAFAPASLVTPLGALSVIISAVMASRFLNEKLNLLGKIG
CFLCILGSTIIVIHSPKEKEIEDLQLLFDMLLDPVFILYVICIVGSTVFV
ACFIAPRHGHTNVVVYIFLCSGIGSLTVMSCKALGLAIRQTLNNGGNVFL
TWMPWFLILVTVTFIAIQMNYLNKALDIFNTSIVTPVYYVMFTTLVIAAS
AILFKEFTHMRFDDILGDVCGFLIVITAVFLLNAFRDIDISLNDVRGLMR
PKMQRVSQFDEEVLVTSNTKERRLSYGSSDIFRKAASFLDH
BO07037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spict-PA | 385 | CG12292-PA | 1..385 | 1..385 | 1954 | 100 | Plus |
| spict-PB | 393 | CG12292-PB | 1..385 | 1..385 | 1954 | 100 | Plus |
