Clone BO07042 Report

Search the DGRC for BO07042

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG11597-RA
Protein status:BO07042.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO07042.3prime Sequence

883 bp (834 high quality bases) assembled on 2005-12-03

> BO07042.3prime
ATGGTCTAGAAAGCTTGCTTGAAAAAATTGACGACAACGCTTTTTCGGTT
TCCTTGGCTGCGGTTTGGAGTGCAGCGCCTGCGCTTCGAACACTTTAAAA
TCATAATCGCCAGCAGCATTTAAGCGCAGAATAGCCGCTTTGTTGCCGCA
GCGATAGCAATAGTTGGGTGCTGACCATATGGTAACAAGAAGTTGGCCAA
AATGCCAACGGAAGCCATCCTGGGCCAACTGATGAGCGCGGCATATGAGA
GAGATTCCATTTGCGCGCGTAAACTCCTCAACAACATCGCCACCGAAGAG
TTTTCCATGTCCTCGTGGCGATGCCGCCCATCCAGGCGCTTCCTGTGGAT
CGCTCCAGAGAAGATCAGCTATAATTCCACTTTCGGGTATCTCGTGGCAG
CGATCCAGGCTACGTAAGTCATCCAATCGTTGCATATCCGGCGACAGGCC
GCCATGAACACACAATATATTGCCATCAATGATAGCCGCCAGCGGCAAGA
GATCGAAGACACGGCAGCACATCCTCCAGACATTCGCAGAGCCGTACCGC
GAAAGGCACTCCTCGTAGAATCCATAGGATCGAGTGGCACTGCGGCACTC
ATGATTGCCCCGTAGCAGGCTAACTTGTGCCGGATGTCGCACCTTGAGAG
CAGCTAGCAGAAGAAAGGTCTCCACGCTGTTCTTGCCCCGATCCACCAGG
TCACCCAGGAACAAGTAGCGATGCTCCTGCACCGAACCGCCCAATTCCAG
CAGGTGGAGCAGATCCTCGAACTGACCGTGAATGTCACCGCATACGATCT
GCGGACTCTGCAGGCTCAGTAGATTCGACTCGCCGACGAGCAAGTCACTC
AACGAGCGGCACAGCTGGCGAACCTCAACTCCC

BO07042.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-PA 954 CG11597-RA 94..951 876..19 4290 100 Minus
CG11597-PB 954 CG11597-RB 94..951 876..19 4290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 1806 CG11597-RC 797..1662 883..19 4305 99.9 Minus
CG11597-RB 1686 CG11597-RB 677..1542 883..19 4305 99.9 Minus
CG11597-RA 1449 CG11597-RA 440..1305 883..19 4305 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11820482..11821339 19..876 4290 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:47:09 has no hits.

BO07042.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:29 Download gff for BO07042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PA 86..954 16..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:56 Download gff for BO07042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PB 86..954 16..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:52 Download gff for BO07042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 422..1287 19..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:48 Download gff for BO07042.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 440..1305 19..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:48 Download gff for BO07042.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11820482..11821347 19..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:52 Download gff for BO07042.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11813582..11814447 19..883 99   Plus

BO07042.5prime Sequence

894 bp (840 high quality bases) assembled on 2005-12-03

> BO07042.5prime
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGCTTAAATGCTGCTGGCGATTATGATTTTAAAGT

BO07042.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-PA 954 CG11597-RA 1..878 17..894 4390 100 Plus
CG11597-PB 954 CG11597-RB 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 1806 CG11597-RC 712..1589 17..894 4390 100 Plus
CG11597-RB 1686 CG11597-RB 592..1469 17..894 4390 100 Plus
CG11597-RA 1449 CG11597-RA 355..1232 17..894 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11820555..11821432 894..17 4390 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:09:05 has no hits.

BO07042.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:30 Download gff for BO07042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:57 Download gff for BO07042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-PB 1..878 17..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:53 Download gff for BO07042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 325..1214 5..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:24 Download gff for BO07042.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 343..1232 5..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:24 Download gff for BO07042.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11820555..11821444 5..894 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:53 Download gff for BO07042.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11813655..11814544 5..894 99   Minus

BO07042.complete Sequence

985 bp (985 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630637

> BO07042.complete
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGCTTAAATGCTGCTGGCGATTATGATTTTAAAGTGTTCGA
AGCGCAGGCGCTGCACTCCAAACCGCAGCCAAGGAAACCGAAAAAGCGTT
GTCGTCAATTTTTTCAAGCAAGCTTTCTAGACCAT

BO07042.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 954 CG11597-PC 1..951 17..967 4755 100 Plus
CG11597-RB 954 CG11597-PB 1..951 17..967 4755 100 Plus
CG11597-RA 954 CG11597-PA 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-RC 1806 CG11597-RC 712..1662 17..967 4755 100 Plus
CG11597-RB 1686 CG11597-RB 592..1542 17..967 4755 100 Plus
CG11597-RA 1449 CG11597-RA 355..1305 17..967 4755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11820482..11821432 967..17 4755 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:48:36 has no hits.

BO07042.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:11 Download gff for BO07042.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RB 1..954 17..970 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:18 Download gff for BO07042.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RB 562..1524 5..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:15 Download gff for BO07042.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 337..1287 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:11 Download gff for BO07042.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RB 562..1524 5..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:55 Download gff for BO07042.complete
Subject Subject Range Query Range Percent Splice Strand
CG11597-RA 355..1305 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:55 Download gff for BO07042.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11820479..11821432 17..969 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:15 Download gff for BO07042.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11813579..11814532 17..969 99   Minus

BO07042.pep Sequence

Translation from 16 to 985

> BO07042.pep
MMSALCPEAMNDADRLVENLRHVPVRLPRELEVRQLCRSLSDLLVGESNL
LSLQSPQIVCGDIHGQFEDLLHLLELGGSVQEHRYLFLGDLVDRGKNSVE
TFLLLAALKVRHPAQVSLLRGNHECRSATRSYGFYEECLSRYGSANVWRM
CCRVFDLLPLAAIIDGNILCVHGGLSPDMQRLDDLRSLDRCHEIPESGII
ADLLWSDPQEAPGWAASPRGHGKLFGGDVVEEFTRANGISLICRAHQLAQ
DGFRWHFGQLLVTIWSAPNYCYRCGNKAAILRLNAAGDYDFKVFEAQALH
SKPQPRKPKKRCRQFFQASFLDH

BO07042.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11597-PC 317 CG11597-PC 1..317 1..317 1694 100 Plus
CG11597-PB 317 CG11597-PB 1..317 1..317 1694 100 Plus
CG11597-PA 317 CG11597-PA 1..317 1..317 1694 100 Plus
Pp4-19C-PH 307 CG32505-PH 5..299 11..307 913 56.6 Plus
Pp4-19C-PG 307 CG32505-PG 5..299 11..307 913 56.6 Plus