Clone Sequence Records
BO07042.3prime Sequence
883 bp (834 high quality bases) assembled on 2005-12-03
> BO07042.3prime
ATGGTCTAGAAAGCTTGCTTGAAAAAATTGACGACAACGCTTTTTCGGTT
TCCTTGGCTGCGGTTTGGAGTGCAGCGCCTGCGCTTCGAACACTTTAAAA
TCATAATCGCCAGCAGCATTTAAGCGCAGAATAGCCGCTTTGTTGCCGCA
GCGATAGCAATAGTTGGGTGCTGACCATATGGTAACAAGAAGTTGGCCAA
AATGCCAACGGAAGCCATCCTGGGCCAACTGATGAGCGCGGCATATGAGA
GAGATTCCATTTGCGCGCGTAAACTCCTCAACAACATCGCCACCGAAGAG
TTTTCCATGTCCTCGTGGCGATGCCGCCCATCCAGGCGCTTCCTGTGGAT
CGCTCCAGAGAAGATCAGCTATAATTCCACTTTCGGGTATCTCGTGGCAG
CGATCCAGGCTACGTAAGTCATCCAATCGTTGCATATCCGGCGACAGGCC
GCCATGAACACACAATATATTGCCATCAATGATAGCCGCCAGCGGCAAGA
GATCGAAGACACGGCAGCACATCCTCCAGACATTCGCAGAGCCGTACCGC
GAAAGGCACTCCTCGTAGAATCCATAGGATCGAGTGGCACTGCGGCACTC
ATGATTGCCCCGTAGCAGGCTAACTTGTGCCGGATGTCGCACCTTGAGAG
CAGCTAGCAGAAGAAAGGTCTCCACGCTGTTCTTGCCCCGATCCACCAGG
TCACCCAGGAACAAGTAGCGATGCTCCTGCACCGAACCGCCCAATTCCAG
CAGGTGGAGCAGATCCTCGAACTGACCGTGAATGTCACCGCATACGATCT
GCGGACTCTGCAGGCTCAGTAGATTCGACTCGCCGACGAGCAAGTCACTC
AACGAGCGGCACAGCTGGCGAACCTCAACTCCC
BO07042.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-PA | 954 | CG11597-RA | 94..951 | 876..19 | 4290 | 100 | Minus |
CG11597-PB | 954 | CG11597-RB | 94..951 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 1806 | CG11597-RC | 797..1662 | 883..19 | 4305 | 99.9 | Minus |
CG11597-RB | 1686 | CG11597-RB | 677..1542 | 883..19 | 4305 | 99.9 | Minus |
CG11597-RA | 1449 | CG11597-RA | 440..1305 | 883..19 | 4305 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11820482..11821339 | 19..876 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:47:09 has no hits.
BO07042.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:29 Download gff for
BO07042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PA | 86..954 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:56 Download gff for
BO07042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PB | 86..954 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:03:52 Download gff for
BO07042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 422..1287 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:48 Download gff for
BO07042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 440..1305 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:48 Download gff for
BO07042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11820482..11821347 | 19..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:03:52 Download gff for
BO07042.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11813582..11814447 | 19..883 | 99 | | Plus |
BO07042.5prime Sequence
894 bp (840 high quality bases) assembled on 2005-12-03
> BO07042.5prime
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGCTTAAATGCTGCTGGCGATTATGATTTTAAAGT
BO07042.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-PA | 954 | CG11597-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
CG11597-PB | 954 | CG11597-RB | 1..878 | 17..894 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 1806 | CG11597-RC | 712..1589 | 17..894 | 4390 | 100 | Plus |
CG11597-RB | 1686 | CG11597-RB | 592..1469 | 17..894 | 4390 | 100 | Plus |
CG11597-RA | 1449 | CG11597-RA | 355..1232 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11820555..11821432 | 894..17 | 4390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:09:05 has no hits.
BO07042.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:30 Download gff for
BO07042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:57 Download gff for
BO07042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-PB | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:53 Download gff for
BO07042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 325..1214 | 5..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:24 Download gff for
BO07042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 343..1232 | 5..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:24 Download gff for
BO07042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11820555..11821444 | 5..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:53 Download gff for
BO07042.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11813655..11814544 | 5..894 | 99 | | Minus |
BO07042.complete Sequence
985 bp (985 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630637
> BO07042.complete
GAAGTTATCAGTCGACATGATGTCTGCCTTGTGCCCCGAGGCAATGAATG
ATGCGGATCGTCTGGTGGAAAATCTGCGCCATGTGCCGGTCCGCCTGCCC
AGGGAGTTGGAGGTTCGCCAGCTGTGCCGCTCGTTGAGTGACTTGCTCGT
CGGCGAGTCGAATCTACTGAGCCTGCAGAGTCCGCAGATCGTATGCGGTG
ACATTCACGGTCAGTTCGAGGATCTGCTCCACCTGCTGGAATTGGGCGGT
TCGGTGCAGGAGCATCGCTACTTGTTCCTGGGTGACCTGGTGGATCGGGG
CAAGAACAGCGTGGAGACCTTTCTTCTGCTAGCTGCTCTCAAGGTGCGAC
ATCCGGCACAAGTTAGCCTGCTACGGGGCAATCATGAGTGCCGCAGTGCC
ACTCGATCCTATGGATTCTACGAGGAGTGCCTTTCGCGGTACGGCTCTGC
GAATGTCTGGAGGATGTGCTGCCGTGTCTTCGATCTCTTGCCGCTGGCGG
CTATCATTGATGGCAATATATTGTGTGTTCATGGCGGCCTGTCGCCGGAT
ATGCAACGATTGGATGACTTACGTAGCCTGGATCGCTGCCACGAGATACC
CGAAAGTGGAATTATAGCTGATCTTCTCTGGAGCGATCCACAGGAAGCGC
CTGGATGGGCGGCATCGCCACGAGGACATGGAAAACTCTTCGGTGGCGAT
GTTGTTGAGGAGTTTACGCGCGCAAATGGAATCTCTCTCATATGCCGCGC
TCATCAGTTGGCCCAGGATGGCTTCCGTTGGCATTTTGGCCAACTTCTTG
TTACCATATGGTCAGCACCCAACTATTGCTATCGCTGCGGCAACAAAGCG
GCTATTCTGCGCTTAAATGCTGCTGGCGATTATGATTTTAAAGTGTTCGA
AGCGCAGGCGCTGCACTCCAAACCGCAGCCAAGGAAACCGAAAAAGCGTT
GTCGTCAATTTTTTCAAGCAAGCTTTCTAGACCAT
BO07042.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 954 | CG11597-PC | 1..951 | 17..967 | 4755 | 100 | Plus |
CG11597-RB | 954 | CG11597-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
CG11597-RA | 954 | CG11597-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-RC | 1806 | CG11597-RC | 712..1662 | 17..967 | 4755 | 100 | Plus |
CG11597-RB | 1686 | CG11597-RB | 592..1542 | 17..967 | 4755 | 100 | Plus |
CG11597-RA | 1449 | CG11597-RA | 355..1305 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11820482..11821432 | 967..17 | 4755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:48:36 has no hits.
BO07042.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:11 Download gff for
BO07042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RB | 1..954 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:39:18 Download gff for
BO07042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RB | 562..1524 | 5..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:15 Download gff for
BO07042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 337..1287 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:11 Download gff for
BO07042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RB | 562..1524 | 5..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:55 Download gff for
BO07042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11597-RA | 355..1305 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:55 Download gff for
BO07042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11820479..11821432 | 17..969 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:15 Download gff for
BO07042.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11813579..11814532 | 17..969 | 99 | | Minus |
BO07042.pep Sequence
Translation from 16 to 985
> BO07042.pep
MMSALCPEAMNDADRLVENLRHVPVRLPRELEVRQLCRSLSDLLVGESNL
LSLQSPQIVCGDIHGQFEDLLHLLELGGSVQEHRYLFLGDLVDRGKNSVE
TFLLLAALKVRHPAQVSLLRGNHECRSATRSYGFYEECLSRYGSANVWRM
CCRVFDLLPLAAIIDGNILCVHGGLSPDMQRLDDLRSLDRCHEIPESGII
ADLLWSDPQEAPGWAASPRGHGKLFGGDVVEEFTRANGISLICRAHQLAQ
DGFRWHFGQLLVTIWSAPNYCYRCGNKAAILRLNAAGDYDFKVFEAQALH
SKPQPRKPKKRCRQFFQASFLDH
BO07042.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11597-PC | 317 | CG11597-PC | 1..317 | 1..317 | 1694 | 100 | Plus |
CG11597-PB | 317 | CG11597-PB | 1..317 | 1..317 | 1694 | 100 | Plus |
CG11597-PA | 317 | CG11597-PA | 1..317 | 1..317 | 1694 | 100 | Plus |
Pp4-19C-PH | 307 | CG32505-PH | 5..299 | 11..307 | 913 | 56.6 | Plus |
Pp4-19C-PG | 307 | CG32505-PG | 5..299 | 11..307 | 913 | 56.6 | Plus |