Clone BO07043 Report

Search the DGRC for BO07043

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG10664-RA
Protein status:BO07043.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO07043.3prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-03

> BO07043.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCCACTTCTTGTTCTCGTAGTCCCACT
TGGAGGTCAATCCGGTGACGGGGTTGATTTCCAGGTCGATGATGCGCTGC
AGCTGCGCCTTCTGGTGCTCCTCGTCGAAGGTAACGGGCAGCTCATCGTA
CACGAAGATGTTCATCAGTACGGCCACCCAGATGGCGGCGGCGCAGAAGA
GGAGTGAAACGCCCAGGTGGAGCTTCCACTCCCCGGATCCAGCCTGGACC
TCGGCGATAGTCTGGCAGAAGCTGGCGCGGTACAGGGCCTTGATCTCCTG
GGTGCTGAGCTTCTTCCAGTCTCCCTGCTCCTTGGCGCGCAGAGCGTTGA
TCTCGTTGGTGGGCTCACGGAAGCGCACGGCGGGCAGAGGGTAGTCCACG
CGATCCGCGTAGCAGGCGGTGCCGTTCCAGCCGTAGCCAACGATCTCCCG
CTTGCCGATCTTGTCCAGTGTGTGGACGGCGGCCACGCTGCCCACCTGGG
CACTCTTGGGCAGCTGAGAGGCCAGCTGGCGGAGCACAGCACTGTTGAGT
AGTCGCAGGGCCATGTCGACTGATAACT

BO07043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10664-PA 549 CG10664-RA 1..546 564..19 2705 99.8 Minus
CG10664-PB 549 CG10664-RB 1..546 564..19 2705 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 1114 CG10664-RD 449..994 564..19 2715 99.8 Minus
CoIV-RC 818 CG10664-RC 92..637 564..19 2715 99.8 Minus
CoIV-RB 796 CG10664-RB 70..615 564..19 2715 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19959280..19959691 564..153 2060 100 Minus
2L 23513712 2L 19959750..19959884 153..19 660 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 12:33:55 has no hits.

BO07043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:31 Download gff for BO07043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 15..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:59 Download gff for BO07043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 15..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:44 Download gff for BO07043.3prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..619 14..571 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:02 Download gff for BO07043.3prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..619 14..571 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:02 Download gff for BO07043.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19959275..19959691 153..571 99 -> Minus
2L 19959751..19959888 14..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:44 Download gff for BO07043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19959275..19959691 153..571 99 -> Minus
arm_2L 19959751..19959888 14..152 97   Minus

BO07043.5prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-03

> BO07043.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACGCAAGCTTTCTAGACC

BO07043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10664-PA 549 CG10664-RA 1..546 17..562 2705 99.8 Plus
CG10664-PB 549 CG10664-RB 1..546 17..562 2705 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 1114 CG10664-RD 449..994 17..562 2715 99.8 Plus
CoIV-RC 818 CG10664-RC 92..637 17..562 2715 99.8 Plus
CoIV-RB 796 CG10664-RB 70..615 17..562 2715 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19959280..19959691 17..428 2060 100 Plus
2L 23513712 2L 19959750..19959884 428..562 660 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 05:25:11 has no hits.

BO07043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:32 Download gff for BO07043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 17..566 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:00 Download gff for BO07043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10664-PB 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:11 Download gff for BO07043.5prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..619 10..567 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:40 Download gff for BO07043.5prime
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 65..619 10..567 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:40 Download gff for BO07043.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19959751..19959888 429..567 97   Plus
2L 19959275..19959691 10..428 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:11 Download gff for BO07043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19959275..19959691 10..428 99 -> Plus
arm_2L 19959751..19959888 429..567 97   Plus

BO07043.complete Sequence

580 bp (580 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630638

> BO07043.complete
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACGCAAGCTTTCTAGACCAT

BO07043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 549 CG10664-PD 1..546 17..562 2715 99.8 Plus
CoIV-RC 549 CG10664-PC 1..546 17..562 2715 99.8 Plus
CoIV-RB 549 CG10664-PB 1..546 17..562 2715 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-RD 1114 CG10664-RD 449..994 17..562 2715 99.8 Plus
CoIV-RC 818 CG10664-RC 92..637 17..562 2715 99.8 Plus
CoIV-RB 796 CG10664-RB 70..615 17..562 2715 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19959280..19959691 17..428 2060 100 Plus
2L 23513712 2L 19959750..19959884 428..562 660 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 20:31:17 has no hits.

BO07043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:57 Download gff for BO07043.complete
Subject Subject Range Query Range Percent Splice Strand
CG10664-RB 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:00 Download gff for BO07043.complete
Subject Subject Range Query Range Percent Splice Strand
CG10664-RA 62..616 10..567 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:57 Download gff for BO07043.complete
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 70..615 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:57 Download gff for BO07043.complete
Subject Subject Range Query Range Percent Splice Strand
CG10664-RB 41..595 10..567 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:58 Download gff for BO07043.complete
Subject Subject Range Query Range Percent Splice Strand
CoIV-RB 70..615 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:58 Download gff for BO07043.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19959280..19959691 17..428 100 -> Plus
2L 19959751..19959884 429..564 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:57 Download gff for BO07043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19959280..19959691 17..428 100 -> Plus
arm_2L 19959751..19959884 429..564 97   Plus

BO07043.pep Sequence

Translation from 16 to 580

> BO07043.pep
MALRLLNSAVLRQLASQLPKSAQVGSVAAVHTLDKIGKREIVGYGWNGTA
CYADRVDYPLPAVRFREPTNEINALRAKEQGDWKKLSTQEIKALYRASFC
QTIAEVQAGSGEWKLHLGVSLLFCAAAIWVAVLMNIFVYDELPVTFDEEH
QKAQLQRIIDLEINPVTGLTSKWDYENKKWKNASFLDH

BO07043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
CoIV-PD 182 CG10664-PD 1..182 1..182 949 100 Plus
CoIV-PC 182 CG10664-PC 1..182 1..182 949 100 Plus
CoIV-PB 182 CG10664-PB 1..182 1..182 949 100 Plus
CoIV-PA 182 CG10664-PA 1..182 1..182 949 100 Plus
CG10396-PB 162 CG10396-PB 17..162 36..181 391 51.4 Plus