Clone Sequence Records
BO07043.3prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-03
> BO07043.3prime
ATGGTCTAGAAAGCTTGCGTTCTTCCACTTCTTGTTCTCGTAGTCCCACT
TGGAGGTCAATCCGGTGACGGGGTTGATTTCCAGGTCGATGATGCGCTGC
AGCTGCGCCTTCTGGTGCTCCTCGTCGAAGGTAACGGGCAGCTCATCGTA
CACGAAGATGTTCATCAGTACGGCCACCCAGATGGCGGCGGCGCAGAAGA
GGAGTGAAACGCCCAGGTGGAGCTTCCACTCCCCGGATCCAGCCTGGACC
TCGGCGATAGTCTGGCAGAAGCTGGCGCGGTACAGGGCCTTGATCTCCTG
GGTGCTGAGCTTCTTCCAGTCTCCCTGCTCCTTGGCGCGCAGAGCGTTGA
TCTCGTTGGTGGGCTCACGGAAGCGCACGGCGGGCAGAGGGTAGTCCACG
CGATCCGCGTAGCAGGCGGTGCCGTTCCAGCCGTAGCCAACGATCTCCCG
CTTGCCGATCTTGTCCAGTGTGTGGACGGCGGCCACGCTGCCCACCTGGG
CACTCTTGGGCAGCTGAGAGGCCAGCTGGCGGAGCACAGCACTGTTGAGT
AGTCGCAGGGCCATGTCGACTGATAACT
BO07043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10664-PA | 549 | CG10664-RA | 1..546 | 564..19 | 2705 | 99.8 | Minus |
CG10664-PB | 549 | CG10664-RB | 1..546 | 564..19 | 2705 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 1114 | CG10664-RD | 449..994 | 564..19 | 2715 | 99.8 | Minus |
CoIV-RC | 818 | CG10664-RC | 92..637 | 564..19 | 2715 | 99.8 | Minus |
CoIV-RB | 796 | CG10664-RB | 70..615 | 564..19 | 2715 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19959280..19959691 | 564..153 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 19959750..19959884 | 153..19 | 660 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:33:55 has no hits.
BO07043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:31 Download gff for
BO07043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:59 Download gff for
BO07043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:44 Download gff for
BO07043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..619 | 14..571 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:02 Download gff for
BO07043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..619 | 14..571 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:02 Download gff for
BO07043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19959275..19959691 | 153..571 | 99 | -> | Minus |
2L | 19959751..19959888 | 14..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:44 Download gff for
BO07043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19959275..19959691 | 153..571 | 99 | -> | Minus |
arm_2L | 19959751..19959888 | 14..152 | 97 | | Minus |
BO07043.5prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-03
> BO07043.5prime
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACGCAAGCTTTCTAGACC
BO07043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10664-PA | 549 | CG10664-RA | 1..546 | 17..562 | 2705 | 99.8 | Plus |
CG10664-PB | 549 | CG10664-RB | 1..546 | 17..562 | 2705 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 1114 | CG10664-RD | 449..994 | 17..562 | 2715 | 99.8 | Plus |
CoIV-RC | 818 | CG10664-RC | 92..637 | 17..562 | 2715 | 99.8 | Plus |
CoIV-RB | 796 | CG10664-RB | 70..615 | 17..562 | 2715 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19959280..19959691 | 17..428 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 19959750..19959884 | 428..562 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:25:11 has no hits.
BO07043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:32 Download gff for
BO07043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:00 Download gff for
BO07043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-PB | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:11 Download gff for
BO07043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..619 | 10..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:40 Download gff for
BO07043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 65..619 | 10..567 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:40 Download gff for
BO07043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19959751..19959888 | 429..567 | 97 | | Plus |
2L | 19959275..19959691 | 10..428 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:11 Download gff for
BO07043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19959275..19959691 | 10..428 | 99 | -> | Plus |
arm_2L | 19959751..19959888 | 429..567 | 97 | | Plus |
BO07043.complete Sequence
580 bp (580 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630638
> BO07043.complete
GAAGTTATCAGTCGACATGGCCCTGCGACTACTCAACAGTGCTGTGCTCC
GCCAGCTGGCCTCTCAGCTGCCCAAGAGTGCCCAGGTGGGCAGCGTGGCC
GCCGTCCACACACTGGACAAGATCGGCAAGCGGGAGATCGTTGGCTACGG
CTGGAACGGCACCGCCTGCTACGCGGATCGCGTGGACTACCCTCTGCCCG
CCGTGCGCTTCCGTGAGCCCACCAACGAGATCAACGCTCTGCGCGCCAAG
GAGCAGGGAGACTGGAAGAAGCTCAGCACCCAGGAGATCAAGGCCCTGTA
CCGCGCCAGCTTCTGCCAGACTATCGCCGAGGTCCAGGCTGGATCCGGGG
AGTGGAAGCTCCACCTGGGCGTTTCACTCCTCTTCTGCGCCGCCGCCATC
TGGGTGGCCGTACTGATGAACATCTTCGTGTACGATGAGCTGCCCGTTAC
CTTCGACGAGGAGCACCAGAAGGCGCAGCTGCAGCGCATCATCGACCTGG
AAATCAACCCCGTCACCGGATTGACCTCCAAGTGGGACTACGAGAACAAG
AAGTGGAAGAACGCAAGCTTTCTAGACCAT
BO07043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 549 | CG10664-PD | 1..546 | 17..562 | 2715 | 99.8 | Plus |
CoIV-RC | 549 | CG10664-PC | 1..546 | 17..562 | 2715 | 99.8 | Plus |
CoIV-RB | 549 | CG10664-PB | 1..546 | 17..562 | 2715 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-RD | 1114 | CG10664-RD | 449..994 | 17..562 | 2715 | 99.8 | Plus |
CoIV-RC | 818 | CG10664-RC | 92..637 | 17..562 | 2715 | 99.8 | Plus |
CoIV-RB | 796 | CG10664-RB | 70..615 | 17..562 | 2715 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19959280..19959691 | 17..428 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 19959750..19959884 | 428..562 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:31:17 has no hits.
BO07043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:57 Download gff for
BO07043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-RB | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:00 Download gff for
BO07043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-RA | 62..616 | 10..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:57 Download gff for
BO07043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 70..615 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:57 Download gff for
BO07043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10664-RB | 41..595 | 10..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:58 Download gff for
BO07043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CoIV-RB | 70..615 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:58 Download gff for
BO07043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19959280..19959691 | 17..428 | 100 | -> | Plus |
2L | 19959751..19959884 | 429..564 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:57 Download gff for
BO07043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19959280..19959691 | 17..428 | 100 | -> | Plus |
arm_2L | 19959751..19959884 | 429..564 | 97 | | Plus |
BO07043.pep Sequence
Translation from 16 to 580
> BO07043.pep
MALRLLNSAVLRQLASQLPKSAQVGSVAAVHTLDKIGKREIVGYGWNGTA
CYADRVDYPLPAVRFREPTNEINALRAKEQGDWKKLSTQEIKALYRASFC
QTIAEVQAGSGEWKLHLGVSLLFCAAAIWVAVLMNIFVYDELPVTFDEEH
QKAQLQRIIDLEINPVTGLTSKWDYENKKWKNASFLDH
BO07043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CoIV-PD | 182 | CG10664-PD | 1..182 | 1..182 | 949 | 100 | Plus |
CoIV-PC | 182 | CG10664-PC | 1..182 | 1..182 | 949 | 100 | Plus |
CoIV-PB | 182 | CG10664-PB | 1..182 | 1..182 | 949 | 100 | Plus |
CoIV-PA | 182 | CG10664-PA | 1..182 | 1..182 | 949 | 100 | Plus |
CG10396-PB | 162 | CG10396-PB | 17..162 | 36..181 | 391 | 51.4 | Plus |