Clone Sequence Records
BO07049.3prime Sequence
892 bp (807 high quality bases) assembled on 2005-12-03
> BO07049.3prime
ATGGTCTAGAAAGCTTGCTTTAATGGAGCAGTTGGCCAGCTTGCTGGAAA
GCTTTTCGCCCTCGGGCGTCAGCAGGAAGTTGTCCTTCCACACGGCCAGT
CCATCGCTGTTCGTCTTGAAGTCGGCGGAGAGTTTCTCCCACACCTTCTT
CTTGGGATTAAGCTGCTCATCGGGCGTGCCACTGAATCCCTCGAAGGAGA
GGCGACTGCCAGCAGTAGCAGTGGCTGGCAGCACAATAGGCTCCACCACC
GTGTGGTCAGCGTTGGAGGTGCACAGAACCATGCCCTCGGACAAGATGCC
GCGCATCTTGGACGGCTTCAGGTTGCAAAGAACCGCCACCAATCGCTGGT
TCAGCTCCTCCTCGGTGACAAACTTCACCAGGCCACTAATAATCGTTCTG
GGTTGCGCCTCAGCCAAGTCTATCTTCAGCACATATAGAGTATCGGCATC
TGGATGACGGGCCACCTCGACGACCTTGCCCACGCGGATATCCAGGCGAT
GGGGTGCATCTTCGTCAGCTCCAGCAGCGGGAGCAGCTCCTGCCTTCACC
TTGGCAGGCGGTGGATAAGCAGCAGCACTCAGTTTTTGCAGTTCTGGGTT
TTCAAAGGCCTTTCGAATGGGATCTAGCAGTCGGTTGATGTACTTCTCCA
CGGTGGCCTTCAGGTCACCCGGGTGCAGTTTGTCCTCCGCGTAGTACTTC
TCCAGATCCTCGTATTTCAGGAAGGTAACATCGCCGCCATGCTCCGCCTC
GCGGTTAACCTCGAAGCCTTCGCCTTCCTTGAACAGCGAGAACAGGACGT
GCTTCACGAAGGACAGCAGGCCGTTGTCGGCAATGTTTCCCGGCTCACAG
AAAGCCTTCTTCAGCTTCTTCTTCACGTTGGCCGGGGAGTCC
BO07049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4561-PA | 1578 | Aats-tyr-RA | 702..1575 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-tyr-RA | 1771 | CG4561-RA | 761..1644 | 892..9 | 4375 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16417789..16418112 | 263..586 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 16418175..16418480 | 587..892 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 16417476..16417736 | 9..269 | 1245 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:53:18 has no hits.
BO07049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:41 Download gff for
BO07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4561-PA | 702..1578 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:12 Download gff for
BO07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4561-PA | 702..1578 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:17 Download gff for
BO07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 761..1647 | 4..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:18 Download gff for
BO07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 761..1647 | 4..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:18 Download gff for
BO07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16418175..16418480 | 587..892 | 100 | | Plus |
3L | 16417473..16417729 | 4..262 | 98 | <- | Plus |
3L | 16417789..16418112 | 263..586 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:17 Download gff for
BO07049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16410573..16410829 | 4..262 | 98 | <- | Plus |
arm_3L | 16410889..16411212 | 263..586 | 100 | <- | Plus |
arm_3L | 16411275..16411580 | 587..892 | 100 | | Plus |
BO07049.5prime Sequence
829 bp (828 high quality bases) assembled on 2005-12-03
> BO07049.5prime
GAAGTTATCAGTCGACATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGC
TGATAACGCGCAATCTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAG
ATCCTGGCGGAGCGCGATCTAAAGATCTACTGGGGAACGGCGACGACGGG
CAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCC
TGAAGGCAGGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTAT
CTGGACAACATGAAGGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTA
CTACGAACAGGTCATCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGG
AGAAACTGAAGTTCGTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTAC
ACCCTGGATGTATACAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAA
GAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCG
GTTTGCTTTATCCTGGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTG
GACGCACAATTCGGTGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGA
GAAGTATCTGCCGCAGTTGGGCTACGAAAAGCGCATTCACTTCATGAATC
CCATGGTTCCCGGCTTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGAC
TCAAAGATCGATCTTCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAA
GAAGGCTTTCTGTGAGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCT
TCGTGAAGCACGTCCTGTTCTCGCTGTTC
BO07049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4561-PA | 1578 | Aats-tyr-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-tyr-RA | 1771 | CG4561-RA | 60..872 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16418604..16419243 | 656..17 | 3200 | 100 | Minus |
3L | 28110227 | 3L | 16418369..16418542 | 829..656 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:26:21 has no hits.
BO07049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:42 Download gff for
BO07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4561-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:14 Download gff for
BO07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4561-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:48 Download gff for
BO07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 60..872 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:20 Download gff for
BO07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 60..872 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:20 Download gff for
BO07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16418369..16418541 | 657..829 | 100 | <- | Minus |
3L | 16418604..16419243 | 17..656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:48 Download gff for
BO07049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16411469..16411641 | 657..829 | 100 | <- | Minus |
arm_3L | 16411704..16412343 | 17..656 | 100 | | Minus |
BO07049.complete Sequence
1609 bp (1609 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638646
> BO07049.complete
GAAGTTATCAGTCGACATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGC
TGATAACGCGCAATCTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAG
ATCCTGGCGGAGCGCGATCTAAAGATCTACTGGGGAACGGCGACGACGGG
CAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCC
TGAAGGCAGGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTAT
CTGGACAACATGAAGGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTA
CTACGAACAGGTCATCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGG
AGAAACTGAAGTTCGTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTAC
ACCCTGGATGTATACAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAA
GAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCG
GTTTGCTTTATCCTGGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTG
GACGCACAATTCGGTGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGA
GAAGTATCTGCCGCAGTTGGGCTACGAAAAGCGCATTCACTTCATGAATC
CCATGGTTCCCGGCTTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGAC
TCAAAGATCGATCTTCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAA
GAAGGCTTTCTGTGAGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCT
TCGTGAAGCACGTCCTGTTCTCGCTGTTCAAGGAAGGCGAAGGCTTCGAG
GTTAACCGCGAGGCGGAGCATGGCGGCGATGTTACCTTCCTGAAATACGA
GGATCTGGAGAAGTACTACGCGGAGGACAAACTGCACCCGGGTGACCTGA
AGGCCACCGTGGAGAAGTACATCAACCGACTGCTAGATCCCATTCGAAAG
GCCTTTGAAAACCCAGAACTGCAAAAACTGAGTGCTGCTGCTTATCCACC
GCCTGCCAAGGTGAAGGCAGGAGCTGCTCCCGCTGCTGGAGCTGACGAAG
ATGCACCCCATCGCCTGGATATCCGCGTGGGCAAGGTCGTCGAGGTGGCC
CGTCATCCAGATGCCGATACTCTATATGTGCTGAAGATAGACTTGGCTGA
GGCGCAACCCAGAACGATTATTAGTGGCCTGGTGAAGTTTGTCACCGAGG
AGGAGCTGAACCAGCGATTGGTGGCGGTTCTTTGCAACCTGAAGCCGTCC
AAGATGCGCGGCATCTTGTCCGAGGGCATGGTTCTGTGCACCTCCAACGC
TGACCACACGGTGGTGGAGCCTATTGTGCTGCCAGCCACTGCTACTGCTG
GCAGTCGCCTCTCCTTCGAGGGATTCAGTGGCACGCCCGATGAGCAGCTT
AATCCCAAGAAGAAGGTGTGGGAGAAACTCTCCGCCGACTTCAAGACGAA
CAGCGATGGACTGGCCGTGTGGAAGGACAACTTCCTGCTGACGCCCGAGG
GCGAAAAGCTTTCCAGCAAGCTGGCCAACTGCTCCATTAAAGCAAGCTTT
CTAGACCAT
BO07049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-tyr-RA | 1578 | CG4561-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-tyr-RA | 1771 | CG4561-RA | 60..1644 | 17..1601 | 7880 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16418604..16419243 | 656..17 | 3200 | 100 | Minus |
3L | 28110227 | 3L | 16418175..16418542 | 1023..656 | 1840 | 100 | Minus |
3L | 28110227 | 3L | 16417789..16418112 | 1347..1024 | 1620 | 100 | Minus |
3L | 28110227 | 3L | 16417476..16417736 | 1601..1341 | 1245 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:56:15 has no hits.
BO07049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:41 Download gff for
BO07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 1..1578 | 17..1595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:14 Download gff for
BO07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 53..1640 | 17..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:35 Download gff for
BO07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 60..1634 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:41 Download gff for
BO07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 53..1640 | 17..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:03 Download gff for
BO07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-tyr-RA | 60..1634 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:03 Download gff for
BO07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16417484..16417729 | 1348..1593 | 99 | <- | Minus |
3L | 16417789..16418112 | 1024..1347 | 100 | <- | Minus |
3L | 16418175..16418541 | 657..1023 | 100 | <- | Minus |
3L | 16418604..16419243 | 17..656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:35 Download gff for
BO07049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16411275..16411641 | 657..1023 | 100 | <- | Minus |
arm_3L | 16410584..16410829 | 1348..1593 | 99 | <- | Minus |
arm_3L | 16410889..16411212 | 1024..1347 | 100 | <- | Minus |
arm_3L | 16411704..16412343 | 17..656 | 100 | | Minus |
BO07049.pep Sequence
Translation from 16 to 1609
> BO07049.pep
MVGITPAEKKALITRNLQETLGDDKLTKILAERDLKIYWGTATTGKPHVA
YFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWSLLELRTKYYEQVI
KAMLSSIGVPLEKLKFVKGSDYQLSKEYTLDVYKLSSVVTQHDAKKAGAE
VVKQVEYPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTFSEKYLPQ
LGYEKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDSPANVKKKLKKAFCE
PGNIADNGLLSFVKHVLFSLFKEGEGFEVNREAEHGGDVTFLKYEDLEKY
YAEDKLHPGDLKATVEKYINRLLDPIRKAFENPELQKLSAAAYPPPAKVK
AGAAPAAGADEDAPHRLDIRVGKVVEVARHPDADTLYVLKIDLAEAQPRT
IISGLVKFVTEEELNQRLVAVLCNLKPSKMRGILSEGMVLCTSNADHTVV
EPIVLPATATAGSRLSFEGFSGTPDEQLNPKKKVWEKLSADFKTNSDGLA
VWKDNFLLTPEGEKLSSKLANCSIKASFLDH
BO07049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-tyr-PA | 525 | CG4561-PA | 1..525 | 1..525 | 2695 | 100 | Plus |
CG8235-PA | 323 | CG8235-PA | 148..323 | 346..525 | 426 | 50.8 | Plus |