Clone BO07049 Report

Search the DGRC for BO07049

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptAats-tyr-RA
Protein status:BO07049.pep: validated full length
Sequenced Size:1609

Clone Sequence Records

BO07049.3prime Sequence

892 bp (807 high quality bases) assembled on 2005-12-03

> BO07049.3prime
ATGGTCTAGAAAGCTTGCTTTAATGGAGCAGTTGGCCAGCTTGCTGGAAA
GCTTTTCGCCCTCGGGCGTCAGCAGGAAGTTGTCCTTCCACACGGCCAGT
CCATCGCTGTTCGTCTTGAAGTCGGCGGAGAGTTTCTCCCACACCTTCTT
CTTGGGATTAAGCTGCTCATCGGGCGTGCCACTGAATCCCTCGAAGGAGA
GGCGACTGCCAGCAGTAGCAGTGGCTGGCAGCACAATAGGCTCCACCACC
GTGTGGTCAGCGTTGGAGGTGCACAGAACCATGCCCTCGGACAAGATGCC
GCGCATCTTGGACGGCTTCAGGTTGCAAAGAACCGCCACCAATCGCTGGT
TCAGCTCCTCCTCGGTGACAAACTTCACCAGGCCACTAATAATCGTTCTG
GGTTGCGCCTCAGCCAAGTCTATCTTCAGCACATATAGAGTATCGGCATC
TGGATGACGGGCCACCTCGACGACCTTGCCCACGCGGATATCCAGGCGAT
GGGGTGCATCTTCGTCAGCTCCAGCAGCGGGAGCAGCTCCTGCCTTCACC
TTGGCAGGCGGTGGATAAGCAGCAGCACTCAGTTTTTGCAGTTCTGGGTT
TTCAAAGGCCTTTCGAATGGGATCTAGCAGTCGGTTGATGTACTTCTCCA
CGGTGGCCTTCAGGTCACCCGGGTGCAGTTTGTCCTCCGCGTAGTACTTC
TCCAGATCCTCGTATTTCAGGAAGGTAACATCGCCGCCATGCTCCGCCTC
GCGGTTAACCTCGAAGCCTTCGCCTTCCTTGAACAGCGAGAACAGGACGT
GCTTCACGAAGGACAGCAGGCCGTTGTCGGCAATGTTTCCCGGCTCACAG
AAAGCCTTCTTCAGCTTCTTCTTCACGTTGGCCGGGGAGTCC

BO07049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4561-PA 1578 Aats-tyr-RA 702..1575 892..19 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1771 CG4561-RA 761..1644 892..9 4375 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16417789..16418112 263..586 1620 100 Plus
3L 28110227 3L 16418175..16418480 587..892 1530 100 Plus
3L 28110227 3L 16417476..16417736 9..269 1245 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 09:53:18 has no hits.

BO07049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:41 Download gff for BO07049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 702..1578 15..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:12 Download gff for BO07049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 702..1578 15..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:17 Download gff for BO07049.3prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 761..1647 4..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:18 Download gff for BO07049.3prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 761..1647 4..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:18 Download gff for BO07049.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16418175..16418480 587..892 100   Plus
3L 16417473..16417729 4..262 98 <- Plus
3L 16417789..16418112 263..586 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:17 Download gff for BO07049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16410573..16410829 4..262 98 <- Plus
arm_3L 16410889..16411212 263..586 100 <- Plus
arm_3L 16411275..16411580 587..892 100   Plus

BO07049.5prime Sequence

829 bp (828 high quality bases) assembled on 2005-12-03

> BO07049.5prime
GAAGTTATCAGTCGACATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGC
TGATAACGCGCAATCTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAG
ATCCTGGCGGAGCGCGATCTAAAGATCTACTGGGGAACGGCGACGACGGG
CAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCC
TGAAGGCAGGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTAT
CTGGACAACATGAAGGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTA
CTACGAACAGGTCATCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGG
AGAAACTGAAGTTCGTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTAC
ACCCTGGATGTATACAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAA
GAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCG
GTTTGCTTTATCCTGGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTG
GACGCACAATTCGGTGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGA
GAAGTATCTGCCGCAGTTGGGCTACGAAAAGCGCATTCACTTCATGAATC
CCATGGTTCCCGGCTTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGAC
TCAAAGATCGATCTTCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAA
GAAGGCTTTCTGTGAGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCT
TCGTGAAGCACGTCCTGTTCTCGCTGTTC

BO07049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4561-PA 1578 Aats-tyr-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1771 CG4561-RA 60..872 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16418604..16419243 656..17 3200 100 Minus
3L 28110227 3L 16418369..16418542 829..656 870 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:26:21 has no hits.

BO07049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:42 Download gff for BO07049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:14 Download gff for BO07049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4561-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:48 Download gff for BO07049.5prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..872 17..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:20 Download gff for BO07049.5prime
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..872 17..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:20 Download gff for BO07049.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16418369..16418541 657..829 100 <- Minus
3L 16418604..16419243 17..656 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:48 Download gff for BO07049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16411469..16411641 657..829 100 <- Minus
arm_3L 16411704..16412343 17..656 100   Minus

BO07049.complete Sequence

1609 bp (1609 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638646

> BO07049.complete
GAAGTTATCAGTCGACATGGTCGGAATAACGCCCGCAGAGAAGAAAGCGC
TGATAACGCGCAATCTGCAGGAGACGCTCGGCGATGACAAGCTGACCAAG
ATCCTGGCGGAGCGCGATCTAAAGATCTACTGGGGAACGGCGACGACGGG
CAAGCCACATGTCGCCTATTTCGTGCCCATGTCGAAGATTGCCGATTTCC
TGAAGGCAGGATGCGAAGTGACCATCCTGTTCGCCGATCTCCACGCCTAT
CTGGACAACATGAAGGCACCGTGGTCTCTCCTGGAGCTGCGAACCAAGTA
CTACGAACAGGTCATCAAGGCCATGTTGAGCTCCATCGGCGTTCCGCTGG
AGAAACTGAAGTTCGTCAAGGGCAGCGACTATCAGCTGTCCAAGGAGTAC
ACCCTGGATGTATACAAGCTCAGCTCCGTGGTCACGCAACACGATGCCAA
GAAGGCGGGCGCAGAGGTGGTCAAACAGGTGGAGTACCCACTGCTCTCCG
GTTTGCTTTATCCTGGTCTGCAGGCTCTGGACGAGGAGTACCTCAAGGTG
GACGCACAATTCGGTGGCGTGGATCAGCGCAAGATCTTTACCTTCTCAGA
GAAGTATCTGCCGCAGTTGGGCTACGAAAAGCGCATTCACTTCATGAATC
CCATGGTTCCCGGCTTGGCTGGTGGCAAGATGTCCTCTTCCGAGGAGGAC
TCAAAGATCGATCTTCTGGACTCCCCGGCCAACGTGAAGAAGAAGCTGAA
GAAGGCTTTCTGTGAGCCGGGAAACATTGCCGACAACGGCCTGCTGTCCT
TCGTGAAGCACGTCCTGTTCTCGCTGTTCAAGGAAGGCGAAGGCTTCGAG
GTTAACCGCGAGGCGGAGCATGGCGGCGATGTTACCTTCCTGAAATACGA
GGATCTGGAGAAGTACTACGCGGAGGACAAACTGCACCCGGGTGACCTGA
AGGCCACCGTGGAGAAGTACATCAACCGACTGCTAGATCCCATTCGAAAG
GCCTTTGAAAACCCAGAACTGCAAAAACTGAGTGCTGCTGCTTATCCACC
GCCTGCCAAGGTGAAGGCAGGAGCTGCTCCCGCTGCTGGAGCTGACGAAG
ATGCACCCCATCGCCTGGATATCCGCGTGGGCAAGGTCGTCGAGGTGGCC
CGTCATCCAGATGCCGATACTCTATATGTGCTGAAGATAGACTTGGCTGA
GGCGCAACCCAGAACGATTATTAGTGGCCTGGTGAAGTTTGTCACCGAGG
AGGAGCTGAACCAGCGATTGGTGGCGGTTCTTTGCAACCTGAAGCCGTCC
AAGATGCGCGGCATCTTGTCCGAGGGCATGGTTCTGTGCACCTCCAACGC
TGACCACACGGTGGTGGAGCCTATTGTGCTGCCAGCCACTGCTACTGCTG
GCAGTCGCCTCTCCTTCGAGGGATTCAGTGGCACGCCCGATGAGCAGCTT
AATCCCAAGAAGAAGGTGTGGGAGAAACTCTCCGCCGACTTCAAGACGAA
CAGCGATGGACTGGCCGTGTGGAAGGACAACTTCCTGCTGACGCCCGAGG
GCGAAAAGCTTTCCAGCAAGCTGGCCAACTGCTCCATTAAAGCAAGCTTT
CTAGACCAT

BO07049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1578 CG4561-PA 1..1575 17..1591 7875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-RA 1771 CG4561-RA 60..1644 17..1601 7880 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16418604..16419243 656..17 3200 100 Minus
3L 28110227 3L 16418175..16418542 1023..656 1840 100 Minus
3L 28110227 3L 16417789..16418112 1347..1024 1620 100 Minus
3L 28110227 3L 16417476..16417736 1601..1341 1245 98.5 Minus
Blast to na_te.dros performed on 2014-11-26 16:56:15 has no hits.

BO07049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:41 Download gff for BO07049.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 1..1578 17..1595 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:14 Download gff for BO07049.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 53..1640 17..1606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:35 Download gff for BO07049.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..1634 17..1593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:41 Download gff for BO07049.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 53..1640 17..1606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:03 Download gff for BO07049.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-tyr-RA 60..1634 17..1593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:03 Download gff for BO07049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16417484..16417729 1348..1593 99 <- Minus
3L 16417789..16418112 1024..1347 100 <- Minus
3L 16418175..16418541 657..1023 100 <- Minus
3L 16418604..16419243 17..656 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:35 Download gff for BO07049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16411275..16411641 657..1023 100 <- Minus
arm_3L 16410584..16410829 1348..1593 99 <- Minus
arm_3L 16410889..16411212 1024..1347 100 <- Minus
arm_3L 16411704..16412343 17..656 100   Minus

BO07049.pep Sequence

Translation from 16 to 1609

> BO07049.pep
MVGITPAEKKALITRNLQETLGDDKLTKILAERDLKIYWGTATTGKPHVA
YFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWSLLELRTKYYEQVI
KAMLSSIGVPLEKLKFVKGSDYQLSKEYTLDVYKLSSVVTQHDAKKAGAE
VVKQVEYPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTFSEKYLPQ
LGYEKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDSPANVKKKLKKAFCE
PGNIADNGLLSFVKHVLFSLFKEGEGFEVNREAEHGGDVTFLKYEDLEKY
YAEDKLHPGDLKATVEKYINRLLDPIRKAFENPELQKLSAAAYPPPAKVK
AGAAPAAGADEDAPHRLDIRVGKVVEVARHPDADTLYVLKIDLAEAQPRT
IISGLVKFVTEEELNQRLVAVLCNLKPSKMRGILSEGMVLCTSNADHTVV
EPIVLPATATAGSRLSFEGFSGTPDEQLNPKKKVWEKLSADFKTNSDGLA
VWKDNFLLTPEGEKLSSKLANCSIKASFLDH

BO07049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-tyr-PA 525 CG4561-PA 1..525 1..525 2695 100 Plus
CG8235-PA 323 CG8235-PA 148..323 346..525 426 50.8 Plus