Clone Sequence Records
BO07054.3prime Sequence
867 bp (752 high quality bases) assembled on 2005-12-03
> BO07054.3prime
ATGGTCTAGAAAGCTTGCCTCGCCATTCTTTTGTTCGTCCTCAGATTCGG
ATTCTTCTTCGGCTGACTGAAGCCATTCGACAAACTTTCGCATTTGTTCA
AGGAAATGCATTTTGCCCTTGTTTGAGTGGCCCTCCTTGTACCAGCGCAA
GATGATCTCCTCGGACAGGACCTCGGTCTTGTAGAACAACAAAATGATTT
TCTGGAAGGCCTTCATGAAGTTCATGTTCTCGTAGCAGAATTCCTGCACC
TTCAAGATTAGGGCCAATTCCGAACGGTCGGTCGAGGCGAAAGCCTGCAA
CAGTGGGCAGTAGTTCTTCAGATGACGAACAGCCTGATCGGTAACCAGCT
CCTCCTTCTTGTTCCATTCGCCCAATGACATGATGGTGGACCAAATAATA
ACAATTATTTCATGATCGGGAATGTTGGTGCGCTGCGAGAAGTCCTTAAT
GTCTGAGGTTATCTCATTATATGGCTTCTCATCGTTGATATCATCGATGA
GCGCCTGCTGCAACTCACGCTTCGCCTCCTGGCTAGCCTGAGCCTTATGT
AGCTTGACGATCTCGTTAAGTTCTTTGTCAAGAAAAACTTGTTTAAAATA
TTCCTCAGTACGTTTGTTCGGTGGGAAAAAGTCCATAAGTTTGCTTTCCA
GTCCACCCTTCTTAAGCGCCTGAATCAGATATGCAATGCCCTTCTCTTGC
TTGAACGTCTGGAACAGCTCTAGTAGAAACTCCAATGCAATGCCATCCTT
GATTAGGTGCTCGTTGTTTAGTACCAGTAAAACATTTGGCGGTACAGAAC
CGTTGACTAACCAGAGCGCTGTCATACGCGCAAGCTTGATGCGTTCACTA
AGAGTAAAGCCCTTTAC
BO07054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2922-PG | 1269 | eIF-5C-RG | 418..1266 | 867..19 | 4220 | 99.8 | Minus |
CG2922-PC | 1269 | eIF-5C-RC | 418..1266 | 867..19 | 4220 | 99.8 | Minus |
CG2922-PF | 1269 | eIF-5C-RF | 418..1266 | 867..19 | 4220 | 99.8 | Minus |
CG2922-PD | 1269 | eIF-5C-RD | 418..1266 | 867..19 | 4220 | 99.8 | Minus |
CG2922-PB | 1269 | eIF-5C-RB | 418..1266 | 867..19 | 4220 | 99.8 | Minus |
CG2922-PE | 1269 | eIF-5C-RE | 418..1266 | 867..19 | 4220 | 99.8 | Minus |
CG2922-PA | 1269 | eIF-5C-RA | 418..1266 | 867..19 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kra-RE | 1701 | CG2922-RE | 638..1486 | 867..19 | 4230 | 99.9 | Minus |
kra-RB | 1847 | CG2922-RB | 784..1632 | 867..19 | 4230 | 99.9 | Minus |
kra-RD | 2026 | CG2922-RD | 963..1811 | 867..19 | 4230 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5596861..5597203 | 54..396 | 1715 | 100 | Plus |
3R | 32079331 | 3R | 5597272..5597515 | 397..640 | 1220 | 100 | Plus |
3R | 32079331 | 3R | 5597772..5597939 | 641..808 | 840 | 100 | Plus |
3R | 32079331 | 3R | 5598204..5598264 | 807..867 | 290 | 98.4 | Plus |
3R | 32079331 | 3R | 5596088..5596124 | 19..55 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:16:37 has no hits.
BO07054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:51 Download gff for
BO07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2922-PB | 418..1269 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:24 Download gff for
BO07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2922-PA | 418..1269 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:56 Download gff for
BO07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exba-RD | 963..1815 | 14..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:23 Download gff for
BO07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kra-RD | 963..1815 | 14..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:23 Download gff for
BO07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5596084..5596122 | 14..53 | 95 | <- | Plus |
3R | 5596861..5597203 | 54..396 | 100 | <- | Plus |
3R | 5597272..5597515 | 397..640 | 100 | <- | Plus |
3R | 5597772..5597937 | 641..806 | 100 | <- | Plus |
3R | 5598204..5598264 | 807..867 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:56 Download gff for
BO07054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1421806..1421844 | 14..53 | 95 | <- | Plus |
arm_3R | 1422583..1422925 | 54..396 | 100 | <- | Plus |
arm_3R | 1422994..1423237 | 397..640 | 100 | <- | Plus |
arm_3R | 1423494..1423659 | 641..806 | 100 | <- | Plus |
arm_3R | 1423926..1423986 | 807..867 | 98 | | Plus |
BO07054.5prime Sequence
932 bp (760 high quality bases) assembled on 2005-12-03
> BO07054.5prime
GAAGTTATCAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGG
GTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCA
ACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGA
CCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACT
ATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTA
CTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAG
CTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATG
AGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATG
TTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCC
TAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACG
GTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATC
AAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAA
GCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGAC
TGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAA
TATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCT
ACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGC
TCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCTCAGAC
ATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATAATTGG
TATTATTNGGTCCACATCATGTCATTGGGCGA
BO07054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2922-PG | 1269 | eIF-5C-RG | 1..899 | 17..915 | 4451 | 99.7 | Plus |
CG2922-PC | 1269 | eIF-5C-RC | 1..899 | 17..915 | 4451 | 99.7 | Plus |
CG2922-PF | 1269 | eIF-5C-RF | 1..899 | 17..915 | 4451 | 99.7 | Plus |
CG2922-PD | 1269 | eIF-5C-RD | 1..899 | 17..915 | 4451 | 99.7 | Plus |
CG2922-PB | 1269 | eIF-5C-RB | 1..899 | 17..915 | 4451 | 99.7 | Plus |
CG2922-PE | 1269 | eIF-5C-RE | 1..899 | 17..915 | 4451 | 99.7 | Plus |
CG2922-PA | 1269 | eIF-5C-RA | 1..899 | 17..915 | 4451 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kra-RE | 1701 | CG2922-RE | 221..1137 | 17..932 | 4534 | 99.7 | Plus |
kra-RB | 1847 | CG2922-RB | 367..1283 | 17..932 | 4534 | 99.7 | Plus |
kra-RD | 2026 | CG2922-RD | 546..1462 | 17..932 | 4534 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5597272..5597515 | 904..661 | 1205 | 99.6 | Minus |
3R | 32079331 | 3R | 5599116..5599353 | 254..17 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 5597772..5597939 | 660..493 | 840 | 100 | Minus |
3R | 32079331 | 3R | 5598204..5598345 | 494..353 | 710 | 100 | Minus |
3R | 32079331 | 3R | 5598942..5599046 | 357..253 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:37:14 has no hits.
BO07054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:52 Download gff for
BO07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2922-PB | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:25 Download gff for
BO07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2922-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:03 Download gff for
BO07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exba-RD | 546..1461 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:57 Download gff for
BO07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kra-RD | 546..1461 | 17..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:57 Download gff for
BO07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5597176..5597203 | 905..931 | 92 | <- | Minus |
3R | 5597272..5597515 | 661..904 | 99 | <- | Minus |
3R | 5597772..5597937 | 495..660 | 100 | <- | Minus |
3R | 5598204..5598342 | 356..494 | 100 | <- | Minus |
3R | 5598944..5599044 | 255..355 | 100 | <- | Minus |
3R | 5599116..5599353 | 17..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:03 Download gff for
BO07054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1422898..1422925 | 905..931 | 92 | <- | Minus |
arm_3R | 1422994..1423237 | 661..904 | 99 | <- | Minus |
arm_3R | 1423494..1423659 | 495..660 | 100 | <- | Minus |
arm_3R | 1423926..1424064 | 356..494 | 100 | <- | Minus |
arm_3R | 1424666..1424766 | 255..355 | 100 | <- | Minus |
arm_3R | 1424838..1425075 | 17..254 | 100 | | Minus |
BO07054.complete Sequence
1300 bp (1300 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630640
> BO07054.complete
GAAGTTATCAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGG
GTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCA
ACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGA
CCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACT
ATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTA
CTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAG
CTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATG
AGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATG
TTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCC
TAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACG
GTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATC
AAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAA
GCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGAC
TGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAA
TATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCT
ACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGC
TCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCTCAGAC
ATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATAATTGT
TATTATTTGGTCCACCATCATGTCATTGGGCGAATGGAACAAGAAGGAGG
AGCTGGTTACCGATCAGGCTGTTCGTCATCTGAAGAACTACTGCCCACTG
TTGCAGGCTTTCGCCTCGACCGACCGTTCGGAATTGGCCCTAATCTTGAA
GGTGCAGGAATTCTGCTACGAGAACATGAACTTCATGAAGGCCTTCCAGA
AAATCATTTTGTTGTTCTACAAGACCGAGGTCCTGTCCGAGGAGATCATC
TTGCGCTGGTACAAGGAGGGCCACTCAAACAAGGGCAAAATGCATTTCCT
TGAACAAATGCGAAAGTTTGTCGAATGGCTTCAGTCAGCCGAAGAAGAAT
CCGAATCTGAGGACGAACAAAAGAATGGCGAGGCAAGCTTTCTAGACCAT
BO07054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kra-RE | 1269 | CG2922-PE | 1..1266 | 17..1282 | 6330 | 100 | Plus |
kra-RB | 1269 | CG2922-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
kra-RD | 1269 | CG2922-PD | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kra-RE | 1701 | CG2922-RE | 221..1486 | 17..1282 | 6330 | 100 | Plus |
kra-RB | 1847 | CG2922-RB | 367..1632 | 17..1282 | 6330 | 100 | Plus |
kra-RD | 2026 | CG2922-RD | 546..1811 | 17..1282 | 6330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5596861..5597203 | 1247..905 | 1715 | 100 | Minus |
3R | 32079331 | 3R | 5597272..5597515 | 904..661 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 5599116..5599353 | 254..17 | 1190 | 100 | Minus |
3R | 32079331 | 3R | 5597772..5597939 | 660..493 | 840 | 100 | Minus |
3R | 32079331 | 3R | 5598204..5598345 | 494..353 | 710 | 100 | Minus |
3R | 32079331 | 3R | 5598942..5599046 | 357..253 | 525 | 100 | Minus |
3R | 32079331 | 3R | 5596088..5596124 | 1282..1246 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:49:13 has no hits.
BO07054.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:42 Download gff for
BO07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exba-RC | 1..1269 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:16 Download gff for
BO07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exba-RC | 601..1870 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:29 Download gff for
BO07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exba-RD | 546..1811 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:42 Download gff for
BO07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exba-RC | 601..1870 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:40 Download gff for
BO07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kra-RD | 546..1811 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:40 Download gff for
BO07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5598944..5599044 | 255..355 | 100 | <- | Minus |
3R | 5599116..5599353 | 17..254 | 100 | | Minus |
3R | 5596086..5596122 | 1248..1284 | 94 | <- | Minus |
3R | 5596861..5597203 | 905..1247 | 100 | <- | Minus |
3R | 5597272..5597515 | 661..904 | 100 | <- | Minus |
3R | 5597772..5597937 | 495..660 | 100 | <- | Minus |
3R | 5598204..5598342 | 356..494 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:29 Download gff for
BO07054.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1421808..1421844 | 1248..1284 | 94 | <- | Minus |
arm_3R | 1422583..1422925 | 905..1247 | 100 | <- | Minus |
arm_3R | 1422994..1423237 | 661..904 | 100 | <- | Minus |
arm_3R | 1423494..1423659 | 495..660 | 100 | <- | Minus |
arm_3R | 1423926..1424064 | 356..494 | 100 | <- | Minus |
arm_3R | 1424666..1424766 | 255..355 | 100 | <- | Minus |
arm_3R | 1424838..1425075 | 17..254 | 100 | | Minus |
BO07054.pep Sequence
Translation from 16 to 1300
> BO07054.pep
MSQKTERPVLSGQRIKTRKRDEREKYDPTGFRDAVIAGLEKTEGDLEQIS
KYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFD
APESMESMRNHEQVFVKLIRRYKYLEKMFEEEMGKVLLFVKGFTPSERIK
LARMTALWLVNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGI
AYLIQALKKGGLESKLMDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQA
SQEAKRELQQALIDDINDEKPYNEITSDIKDFSQRTNIPDHEIIVIIWST
IMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTDRSELALILKVQEFC
YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRK
FVEWLQSAEEESESEDEQKNGEASFLDH
BO07054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kra-PE | 422 | CG2922-PE | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PB | 422 | CG2922-PB | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PD | 422 | CG2922-PD | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PF | 422 | CG2922-PF | 1..422 | 1..422 | 2169 | 100 | Plus |
kra-PC | 422 | CG2922-PC | 1..422 | 1..422 | 2169 | 100 | Plus |