Clone BO07054 Report

Search the DGRC for BO07054

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptexba-RA
Protein status:BO07054.pep: validated full length
Sequenced Size:1300

Clone Sequence Records

BO07054.3prime Sequence

867 bp (752 high quality bases) assembled on 2005-12-03

> BO07054.3prime
ATGGTCTAGAAAGCTTGCCTCGCCATTCTTTTGTTCGTCCTCAGATTCGG
ATTCTTCTTCGGCTGACTGAAGCCATTCGACAAACTTTCGCATTTGTTCA
AGGAAATGCATTTTGCCCTTGTTTGAGTGGCCCTCCTTGTACCAGCGCAA
GATGATCTCCTCGGACAGGACCTCGGTCTTGTAGAACAACAAAATGATTT
TCTGGAAGGCCTTCATGAAGTTCATGTTCTCGTAGCAGAATTCCTGCACC
TTCAAGATTAGGGCCAATTCCGAACGGTCGGTCGAGGCGAAAGCCTGCAA
CAGTGGGCAGTAGTTCTTCAGATGACGAACAGCCTGATCGGTAACCAGCT
CCTCCTTCTTGTTCCATTCGCCCAATGACATGATGGTGGACCAAATAATA
ACAATTATTTCATGATCGGGAATGTTGGTGCGCTGCGAGAAGTCCTTAAT
GTCTGAGGTTATCTCATTATATGGCTTCTCATCGTTGATATCATCGATGA
GCGCCTGCTGCAACTCACGCTTCGCCTCCTGGCTAGCCTGAGCCTTATGT
AGCTTGACGATCTCGTTAAGTTCTTTGTCAAGAAAAACTTGTTTAAAATA
TTCCTCAGTACGTTTGTTCGGTGGGAAAAAGTCCATAAGTTTGCTTTCCA
GTCCACCCTTCTTAAGCGCCTGAATCAGATATGCAATGCCCTTCTCTTGC
TTGAACGTCTGGAACAGCTCTAGTAGAAACTCCAATGCAATGCCATCCTT
GATTAGGTGCTCGTTGTTTAGTACCAGTAAAACATTTGGCGGTACAGAAC
CGTTGACTAACCAGAGCGCTGTCATACGCGCAAGCTTGATGCGTTCACTA
AGAGTAAAGCCCTTTAC

BO07054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2922-PG 1269 eIF-5C-RG 418..1266 867..19 4220 99.8 Minus
CG2922-PC 1269 eIF-5C-RC 418..1266 867..19 4220 99.8 Minus
CG2922-PF 1269 eIF-5C-RF 418..1266 867..19 4220 99.8 Minus
CG2922-PD 1269 eIF-5C-RD 418..1266 867..19 4220 99.8 Minus
CG2922-PB 1269 eIF-5C-RB 418..1266 867..19 4220 99.8 Minus
CG2922-PE 1269 eIF-5C-RE 418..1266 867..19 4220 99.8 Minus
CG2922-PA 1269 eIF-5C-RA 418..1266 867..19 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
kra-RE 1701 CG2922-RE 638..1486 867..19 4230 99.9 Minus
kra-RB 1847 CG2922-RB 784..1632 867..19 4230 99.9 Minus
kra-RD 2026 CG2922-RD 963..1811 867..19 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5596861..5597203 54..396 1715 100 Plus
3R 32079331 3R 5597272..5597515 397..640 1220 100 Plus
3R 32079331 3R 5597772..5597939 641..808 840 100 Plus
3R 32079331 3R 5598204..5598264 807..867 290 98.4 Plus
3R 32079331 3R 5596088..5596124 19..55 185 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:16:37 has no hits.

BO07054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:51 Download gff for BO07054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2922-PB 418..1269 15..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:24 Download gff for BO07054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2922-PA 418..1269 15..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:56 Download gff for BO07054.3prime
Subject Subject Range Query Range Percent Splice Strand
exba-RD 963..1815 14..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:23 Download gff for BO07054.3prime
Subject Subject Range Query Range Percent Splice Strand
kra-RD 963..1815 14..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:23 Download gff for BO07054.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5596084..5596122 14..53 95 <- Plus
3R 5596861..5597203 54..396 100 <- Plus
3R 5597272..5597515 397..640 100 <- Plus
3R 5597772..5597937 641..806 100 <- Plus
3R 5598204..5598264 807..867 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:56 Download gff for BO07054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1421806..1421844 14..53 95 <- Plus
arm_3R 1422583..1422925 54..396 100 <- Plus
arm_3R 1422994..1423237 397..640 100 <- Plus
arm_3R 1423494..1423659 641..806 100 <- Plus
arm_3R 1423926..1423986 807..867 98   Plus

BO07054.5prime Sequence

932 bp (760 high quality bases) assembled on 2005-12-03

> BO07054.5prime
GAAGTTATCAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGG
GTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCA
ACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGA
CCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACT
ATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTA
CTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAG
CTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATG
AGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATG
TTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCC
TAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACG
GTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATC
AAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAA
GCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGAC
TGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAA
TATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCT
ACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGC
TCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCTCAGAC
ATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATAATTGG
TATTATTNGGTCCACATCATGTCATTGGGCGA

BO07054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2922-PG 1269 eIF-5C-RG 1..899 17..915 4451 99.7 Plus
CG2922-PC 1269 eIF-5C-RC 1..899 17..915 4451 99.7 Plus
CG2922-PF 1269 eIF-5C-RF 1..899 17..915 4451 99.7 Plus
CG2922-PD 1269 eIF-5C-RD 1..899 17..915 4451 99.7 Plus
CG2922-PB 1269 eIF-5C-RB 1..899 17..915 4451 99.7 Plus
CG2922-PE 1269 eIF-5C-RE 1..899 17..915 4451 99.7 Plus
CG2922-PA 1269 eIF-5C-RA 1..899 17..915 4451 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
kra-RE 1701 CG2922-RE 221..1137 17..932 4534 99.7 Plus
kra-RB 1847 CG2922-RB 367..1283 17..932 4534 99.7 Plus
kra-RD 2026 CG2922-RD 546..1462 17..932 4534 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5597272..5597515 904..661 1205 99.6 Minus
3R 32079331 3R 5599116..5599353 254..17 1190 100 Minus
3R 32079331 3R 5597772..5597939 660..493 840 100 Minus
3R 32079331 3R 5598204..5598345 494..353 710 100 Minus
3R 32079331 3R 5598942..5599046 357..253 525 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:37:14 has no hits.

BO07054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:52 Download gff for BO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2922-PB 1..916 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:25 Download gff for BO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2922-PA 1..916 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:03 Download gff for BO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
exba-RD 546..1461 17..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:57 Download gff for BO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
kra-RD 546..1461 17..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:57 Download gff for BO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5597176..5597203 905..931 92 <- Minus
3R 5597272..5597515 661..904 99 <- Minus
3R 5597772..5597937 495..660 100 <- Minus
3R 5598204..5598342 356..494 100 <- Minus
3R 5598944..5599044 255..355 100 <- Minus
3R 5599116..5599353 17..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:03 Download gff for BO07054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1422898..1422925 905..931 92 <- Minus
arm_3R 1422994..1423237 661..904 99 <- Minus
arm_3R 1423494..1423659 495..660 100 <- Minus
arm_3R 1423926..1424064 356..494 100 <- Minus
arm_3R 1424666..1424766 255..355 100 <- Minus
arm_3R 1424838..1425075 17..254 100   Minus

BO07054.complete Sequence

1300 bp (1300 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630640

> BO07054.complete
GAAGTTATCAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGG
GTCAACGCATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCA
ACGGGATTCCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGA
CCTGGAACAAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACT
ATCGTCGCTACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTA
CTAGTGCCTGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAG
CTACTGCATCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATG
AGCAGGTATTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATG
TTCGAAGAGGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCC
TAGTGAACGCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACG
GTTCTGTACCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATC
AAGGATGGCATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAA
GCAAGAGAAGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGAC
TGGAAAGCAAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAA
TATTTTAAACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCT
ACATAAGGCTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGC
TCATCGATGATATCAACGATGAGAAGCCATATAATGAGATAACCTCAGAC
ATTAAGGACTTCTCGCAGCGCACCAACATTCCCGATCATGAAATAATTGT
TATTATTTGGTCCACCATCATGTCATTGGGCGAATGGAACAAGAAGGAGG
AGCTGGTTACCGATCAGGCTGTTCGTCATCTGAAGAACTACTGCCCACTG
TTGCAGGCTTTCGCCTCGACCGACCGTTCGGAATTGGCCCTAATCTTGAA
GGTGCAGGAATTCTGCTACGAGAACATGAACTTCATGAAGGCCTTCCAGA
AAATCATTTTGTTGTTCTACAAGACCGAGGTCCTGTCCGAGGAGATCATC
TTGCGCTGGTACAAGGAGGGCCACTCAAACAAGGGCAAAATGCATTTCCT
TGAACAAATGCGAAAGTTTGTCGAATGGCTTCAGTCAGCCGAAGAAGAAT
CCGAATCTGAGGACGAACAAAAGAATGGCGAGGCAAGCTTTCTAGACCAT

BO07054.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
kra-RE 1269 CG2922-PE 1..1266 17..1282 6330 100 Plus
kra-RB 1269 CG2922-PB 1..1266 17..1282 6330 100 Plus
kra-RD 1269 CG2922-PD 1..1266 17..1282 6330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
kra-RE 1701 CG2922-RE 221..1486 17..1282 6330 100 Plus
kra-RB 1847 CG2922-RB 367..1632 17..1282 6330 100 Plus
kra-RD 2026 CG2922-RD 546..1811 17..1282 6330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5596861..5597203 1247..905 1715 100 Minus
3R 32079331 3R 5597272..5597515 904..661 1220 100 Minus
3R 32079331 3R 5599116..5599353 254..17 1190 100 Minus
3R 32079331 3R 5597772..5597939 660..493 840 100 Minus
3R 32079331 3R 5598204..5598345 494..353 710 100 Minus
3R 32079331 3R 5598942..5599046 357..253 525 100 Minus
3R 32079331 3R 5596088..5596124 1282..1246 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:49:13 has no hits.

BO07054.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:42 Download gff for BO07054.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RC 1..1269 17..1286 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:16 Download gff for BO07054.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RC 601..1870 17..1287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:29 Download gff for BO07054.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RD 546..1811 17..1284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:42 Download gff for BO07054.complete
Subject Subject Range Query Range Percent Splice Strand
exba-RC 601..1870 17..1287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:40 Download gff for BO07054.complete
Subject Subject Range Query Range Percent Splice Strand
kra-RD 546..1811 17..1284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:40 Download gff for BO07054.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5598944..5599044 255..355 100 <- Minus
3R 5599116..5599353 17..254 100   Minus
3R 5596086..5596122 1248..1284 94 <- Minus
3R 5596861..5597203 905..1247 100 <- Minus
3R 5597272..5597515 661..904 100 <- Minus
3R 5597772..5597937 495..660 100 <- Minus
3R 5598204..5598342 356..494 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:29 Download gff for BO07054.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1421808..1421844 1248..1284 94 <- Minus
arm_3R 1422583..1422925 905..1247 100 <- Minus
arm_3R 1422994..1423237 661..904 100 <- Minus
arm_3R 1423494..1423659 495..660 100 <- Minus
arm_3R 1423926..1424064 356..494 100 <- Minus
arm_3R 1424666..1424766 255..355 100 <- Minus
arm_3R 1424838..1425075 17..254 100   Minus

BO07054.pep Sequence

Translation from 16 to 1300

> BO07054.pep
MSQKTERPVLSGQRIKTRKRDEREKYDPTGFRDAVIAGLEKTEGDLEQIS
KYLDSAGNKLDYRRYGEVLFDILIAGGLLVPGGSISQDGEKPRTSYCIFD
APESMESMRNHEQVFVKLIRRYKYLEKMFEEEMGKVLLFVKGFTPSERIK
LARMTALWLVNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGI
AYLIQALKKGGLESKLMDFFPPNKRTEEYFKQVFLDKELNEIVKLHKAQA
SQEAKRELQQALIDDINDEKPYNEITSDIKDFSQRTNIPDHEIIVIIWST
IMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTDRSELALILKVQEFC
YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRK
FVEWLQSAEEESESEDEQKNGEASFLDH

BO07054.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
kra-PE 422 CG2922-PE 1..422 1..422 2169 100 Plus
kra-PB 422 CG2922-PB 1..422 1..422 2169 100 Plus
kra-PD 422 CG2922-PD 1..422 1..422 2169 100 Plus
kra-PF 422 CG2922-PF 1..422 1..422 2169 100 Plus
kra-PC 422 CG2922-PC 1..422 1..422 2169 100 Plus