Clone BO07058 Report

Search the DGRC for BO07058

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG1753-RA
Protein status:BO07058.pep: Imported from assembly
Sequenced Size:1600

Clone Sequence Records

BO07058.3prime Sequence

881 bp (744 high quality bases) assembled on 2005-12-03

> BO07058.3prime
ATGGTCTAGAAAGCTTGAGTGGCTGCCGCCGTTGGTGGTGCCATTGGCCT
TGGGCTTCTGCTTGCCGGCGGCAATGAAAGTGGTCACGTCCAGCTTGGTG
GCCAGAGCTTTGAGCTCCACCTTGCCGGCCGGGTTCTTGCCCAGGATGAG
CACGCTGGGGTCCACTTCGAGGACGCGGGCCAACTTGCCCAGAATCTCGG
ATTCGTTCAGTCGGATTACTCGTTTGTTGAGCGCCTTGATTGCGGGATCG
GACTGCTGGCGGTTCATGCTCACGATCTGCGTGATCAGCGTCTCCTGACC
CACGACGCCCAGGACAGAACCATCATCCTGATCCACGACGGGCAGCTGGT
CCACGCGGTGTTTCTTCATCAGGGCAATAGCCTCACCAACAGTTGCATCC
GACTTGAGAATGACCGGGGGAGCGGGTAGCTCCAACTCCGCGATGGCCAG
GCTCCACCACCAGTGACCGTGCTCGTTTACCGGCTCCTTGAAGTTGCGCG
CCTCCATCCAGTTGTCCGACACGAACTTGGTCATGTAGTTGCGTATGCCA
TCGGGCAGAATGACCACGCACCGCTGGCCTTTCTTCAATTTGCGGGCATG
CTCGAGGGCAGCGTGCATCGCTCCGCCACTGGACCCGCCGCACAACAGAC
CCTCCTCCGCGTTCAGGCGTCTGCTCATGGGGAAACAGTCTGAGTCGCCG
ATTTTCGTCCACACATCCACGACGGTGTCATCGAATACGGTGGGCGGAAA
GTCGTAGCCGATGCCCTCCACCTCGTAGAATTGCACATCGGTCTTGTTGA
GCTCAGCAGGGCGGGCAAGGATCGAGCCATANGGATCCACGCCGACTATC
TGGCAACTGGGAACCTGCTCCTTGATCTTAC

BO07058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1753-PA 1569 CG1753-RA 704..1567 881..18 4301 99.8 Minus
CG1753-PB 1569 CG1753-RB 704..1567 881..18 4301 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1788 CG1753-RC 795..1658 881..18 4309 99.9 Minus
Cbs-RB 1990 CG1753-RB 997..1860 881..18 4309 99.9 Minus
Cbs-RA 1911 CG1753-RA 918..1781 881..18 4309 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21048037..21048598 881..320 2799 99.8 Minus
X 23542271 X 21048664..21048966 320..18 1515 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:15:53 has no hits.

BO07058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:57 Download gff for BO07058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 704..1569 15..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:32 Download gff for BO07058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 704..1569 15..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:10 Download gff for BO07058.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 918..1786 12..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:22 Download gff for BO07058.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 918..1786 12..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:22 Download gff for BO07058.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21048037..21048598 320..881 99 -> Minus
X 21048665..21048971 12..319 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:10 Download gff for BO07058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20919064..20919625 320..881 99 -> Minus
arm_X 20919692..20919998 12..319 99   Minus

BO07058.5prime Sequence

889 bp (847 high quality bases) assembled on 2005-12-03

> BO07058.5prime
GAAGTTATCAGTCGACATGCCACAACCGAAGCCATACGAGAGGCCCGCGG
ACTTCATCGATCCCGGCAAGCCGTCCAAGTGCAAATGGCATCTGGGTACA
GCCGAGAAGTCGCCCCACATCCATCGGGGCATCGCCCACCGCCAGCAGAT
TACGCCCAACATCCTCGAGGTGATCGGATGCACGCCACTGGTCAAGTTGA
ACAACATTCCCGCCAGCGACGGCATCGAATGCGAGATGTATGCCAAGTGC
GAGTTCCTTAATCCGGGTGGATCAGTGAAGGACCGCATTGGGTACCGCAT
GGTGCAGGACGCCGAGGAGCAGGGCCTGCTCAAGCCAGGCTACACCATCA
TCGAACCAACGTCTGGAAACACGGGCATTGGACTGGCAATGGCCTGTGCC
GTTAAGGGATACAAGTGCATTATCGTGATGCCGGAGAAGATGTCCAACGA
GAAGGTGTCCGCGCTGCGAACCCTCGGGGCCAAGATCATACGTACTCCAA
CGGAGGCAGCCTACGATTCGCCGGAGGGACTGATCTACGTTGCTCAGCAG
CTGCAGCGGGAAACGCCCAACTCGATTGTCTTGGATCAGTATCGCAACGC
TGGCAATCCGCTGGCTCACTACGATGGCACTGCCGCCGAGATTCTGTGGC
AGCTGGACAACAAGGTCGATATGATAGTGGTCTCGGCGGGAACGGCGGGA
ACTATCAGTGGTATTGGGCGTAAGATCAAGGAGCAGGTTCCCAGTTGCCA
GATAGTCGGCGTGGATCCCTATGGCTCGATCCTTGCCCGCCCTGCTGAGC
TCAACAAGACCGATGTGCAATTCTACGAGGTGGAGGGCATCGGCTACGAC
TTTCCGCCCACCGTATTCGATGACACCGTCGTGGATGTG

BO07058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1753-PA 1569 CG1753-RA 1..873 17..889 4365 100 Plus
CG1753-PB 1569 CG1753-RB 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1788 CG1753-RC 92..964 17..889 4365 100 Plus
Cbs-RB 1990 CG1753-RB 294..1166 17..889 4365 100 Plus
Cbs-RA 1911 CG1753-RA 215..1087 17..889 4365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21047557..21048206 240..889 3250 100 Plus
X 23542271 X 21047190..21047412 17..239 1115 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:16:47 has no hits.

BO07058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:07:58 Download gff for BO07058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:33 Download gff for BO07058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1753-PB 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:23:58 Download gff for BO07058.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 208..1087 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:25 Download gff for BO07058.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 208..1087 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:25 Download gff for BO07058.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21047180..21047412 8..239 98 -> Plus
X 21047557..21048206 240..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:23:58 Download gff for BO07058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20918207..20918439 8..239 98 -> Plus
arm_X 20918584..20919233 240..889 100   Plus

BO07058.complete Sequence

1600 bp assembled on 2008-08-15

> BO07058.complete
GAAGTTATCAGTCGACATGCCACAACCGAAGCCATACGAGAGGCCCGCGG
ACTTCATCGATCCCGGCAAGCCGTCCAAGTGCAAATGGCATCTGGGTACA
GCCGAGAAGTCGCCCCACATCCATCGGGGCATCGCCCACCGCCAGCAGAT
TACGCCCAACATCCTCGAGGTGATCGGATGCACGCCACTGGTCAAGTTGA
ACAACATTCCCGCCAGCGACGGCATCGAATGCGAGATGTATGCCAAGTGC
GAGTTCCTTAATCCGGGTGGATCAGTGAAGGACCGCATTGGGTACCGCAT
GGTGCAGGACGCCGAGGAGCAGGGCCTGCTCAAGCCAGGCTACACCATCA
TCGAACCAACGTCTGGAAACACGGGCATTGGACTGGCAATGGCCTGTGCC
GTTAAGGGATACAAGTGCATTATCGTGATGCCGGAGAAGATGTCCAACGA
GAAGGTGTCCGCGCTGCGAACCCTCGGGGCCAAGATCATACGTACTCCAA
CGGAGGCAGCCTACGATTCGCCGGAGGGACTGATCTACGTTGCTCAGCAG
CTGCAGCGGGAAACGCCCAACTCGATTGTCTTGGATCAGTATCGCAACGC
TGGCAATCCGCTGGCTCACTACGATGGCACTGCCGCCGAGATTCTGTGGC
AGCTGGACAACAAGGTCGATATGATAGTGGTCTCGGCGGGAACGGCGGGA
ACTATCAGTGGTATTGGGCGTAAGATCAAGGAGCAGGTTCCCAGTTGCCA
GATAGTCGGCGTGGATCCCTATGGCTCGATCCTTGCCCGCCCTGCTGAGC
TCAACAAGACCGATGTGCAATTCTACGAGGTGGAGGGCATCGGCTACGAC
TTTCCGCCCACCGTATTCGATGACACCGTCGTGGATGTGTGGACGAAAAT
CGGCGACTCAGACTGTTTCCCCATGAGCAGACGCCTGAACGCGGAGGAGG
GTCTGTTGTGCGGCGGGTCCAGTGGCGGAGCGATGCACGCTGCCCTCGAG
CATGCCCGCAAATTGAAGAAAGGCCAGCGGTGCGTGGTCATTCTGCCCGA
TGGCATACGCAACTACATGACCAAGTTCGTGTCGGACAACTGGATGGAGG
CGCGCAACTTCAAGGAGCCGGTAAACGAGCACGGTCACTGGTGGTGGAGC
CTGGCCATCGCGGAGTTGGAGCTACCCGCTCCCCCGGTCATTCTCAAGTC
GGATGCAACTGTTGGTGAGGCTATTGCCCTGATGAAGAAACACCGCGTGG
ACCAGCTGCCCGTCGTGGATCAGGATGATGGTTCTGTCCTGGGCGTCGTG
GGTCAGGAGACGCTGATCACGCAGATCGTGAGCATGAACCGCCAGCAGTC
CGATCCCGCAATCAAGGCGCTCAACAAACGAGTAATCCGACTGAACGAAT
CCGAGATTCTGGGCAAGTTGGCCCGCGTCCTCGAAGTGGACCCCAGCGTG
CTCATCCTGGGCAAGAACCCGGCCGGCAAGGTGGAGCTCAAAGCTCTGGC
CACCAAGCTGGACGTGACCACTTTCATTGCCGCCGGCAAGCAGAAGCCCA
AGGCCAATGGCACCACCAACGGCGGCAGCCACTCAAGCTTTCTAGACCAT

BO07058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1569 CG1753-PC 1..1567 17..1583 7835 100 Plus
Cbs-RB 1569 CG1753-PB 1..1567 17..1583 7835 100 Plus
Cbs-RA 1569 CG1753-PA 1..1567 17..1583 7835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-RC 1788 CG1753-RC 92..1658 17..1583 7835 100 Plus
Cbs-RB 1990 CG1753-RB 294..1860 17..1583 7835 100 Plus
Cbs-RA 1911 CG1753-RA 215..1781 17..1583 7835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21047557..21048598 240..1281 5210 100 Plus
X 23542271 X 21048664..21048966 1281..1583 1515 100 Plus
X 23542271 X 21047190..21047412 17..239 1115 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:56:35 has no hits.

BO07058.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:17 Download gff for BO07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 285..1865 7..1589 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:52 Download gff for BO07058.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 215..1781 17..1584 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:45 Download gff for BO07058.complete
Subject Subject Range Query Range Percent Splice Strand
CG1753-RB 294..1860 17..1584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:30 Download gff for BO07058.complete
Subject Subject Range Query Range Percent Splice Strand
Cbs-RA 215..1781 17..1584 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:30 Download gff for BO07058.complete
Subject Subject Range Query Range Percent Splice Strand
X 21047190..21047412 17..239 100 -> Plus
X 21047557..21048598 240..1281 100 -> Plus
X 21048665..21048966 1282..1584 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:52 Download gff for BO07058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20918217..20918439 17..239 100 -> Plus
arm_X 20918584..20919625 240..1281 100 -> Plus
arm_X 20919692..20919993 1282..1584 99   Plus

BO07058.pep Sequence

Translation from 16 to 1600

> BO07058.pep
MPQPKPYERPADFIDPGKPSKCKWHLGTAEKSPHIHRGIAHRQQITPNIL
EVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE
EQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSAL
RTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLA
HYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVD
PYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDC
FPMSRRLNAEEGLLCGGSSGGAMHAALEHARKLKKGQRCVVILPDGIRNY
MTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVG
EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIK
ALNKRVIRLNESEILGKLARVLEVDPSVLILGKNPAGKVELKALATKLDV
TTFIAAGKQKPKANGTTNGGSHSSFLDH

BO07058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cbs-PC 522 CG1753-PC 1..522 1..522 2734 100 Plus
Cbs-PB 522 CG1753-PB 1..522 1..522 2734 100 Plus
Cbs-PA 522 CG1753-PA 1..522 1..522 2734 100 Plus