Clone Sequence Records
BO07059.3prime Sequence
907 bp (848 high quality bases) assembled on 2005-12-03
> BO07059.3prime
ATGGTCTAGAAAGCTTGCTCGCAGATCGGGATCCTCGTCCGCAGCCTTCT
TGATCCGCAGCAAGATGGTGGTGTACCACTGATCCAACCGGGAGATGCTG
TCGTAGTCCTTGACGGCCTCTGTGAATCCCTCGATGTTCTGTTCCTCTAG
ATTCTCGCACAACACCTTGATGAGCTTGAACTCCCTGGAGTCCTGGAATG
CTGGGTACTGCTGCGCATACTTTTCGATGGCATGCTGGGCGTTCAGGAGG
TCCACGCTGAGATGGCATAGAGCGGCCCTGAAGAAGTACTCCTTGGCACT
GTACTTGAGCAGAGAGCTCTCCAGCGAGGAGGCGGCCACCTGCTCGTATA
TGGATATTGCTTTCTCGTAATCCTCCAGTTGGGCGGCGTACTGGGCCACC
TTCAACATGCACTTGTTGGCCGAACTGACCGACTCTTCACCCTTGAAGTA
ATCAGCCGCCTGCTCATAGTGCTGAATAGACTTGGCCAGATTATTGGGAT
CACTTTCGTACATCTCGGCGATGCTTTGGTGATGTTTGGCAGCCATCGTA
AAGCGGCCCATATCCGTGTAGATGTCGATGGACTTCATCAGGCAGTTGAC
GGCGCTCTCCACGTCCACCTTCTTGTAGCAGTTGGAAGCGTCTACGTAGC
AGGTTCCGGCATCGTGACGACTTCCAGCCCGCGCGTGTAGAGTTGCCGCC
TCGCAGAAGCACTCCCCAGCCTTTGTCCAGTTTTTGGACATCTTAAACAT
GTTGCCCGCCCGCTGGTAGCACTCGATGGCGTCCTCCACCTTGTTGGACC
CTCCGAACAGCGATCCCAGAAAGCCCTTCTGCTGGGTCAACTTCTTCTCC
GCCTCGGGCATCAGCTGGAGCGCCTTCTGTTCGTTGTCCCCATGTCGACT
GGATACT
BO07059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6625-PA | 879 | Snap-RA | 7..876 | 888..19 | 4325 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 2070 | CG6625-RA | 157..1037 | 898..19 | 4365 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20314982..20315306 | 487..163 | 1625 | 100 | Minus |
3L | 28110227 | 3L | 20314607..20314924 | 803..486 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 20315396..20315544 | 167..19 | 745 | 100 | Minus |
3L | 28110227 | 3L | 20313788..20313884 | 898..803 | 420 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:15:12 has no hits.
BO07059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:00 Download gff for
BO07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-PA | 1..879 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:34 Download gff for
BO07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6625-PA | 1..879 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:27 Download gff for
BO07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 151..1040 | 15..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:58 Download gff for
BO07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaSnap-RA | 151..1040 | 15..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:58 Download gff for
BO07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20313782..20313884 | 803..907 | 94 | -> | Minus |
3L | 20314608..20314923 | 487..802 | 100 | -> | Minus |
3L | 20314983..20315303 | 166..486 | 100 | -> | Minus |
3L | 20315398..20315547 | 15..165 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:27 Download gff for
BO07059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20306882..20306984 | 803..907 | 94 | -> | Minus |
arm_3L | 20307708..20308023 | 487..802 | 100 | -> | Minus |
arm_3L | 20308083..20308403 | 166..486 | 100 | -> | Minus |
arm_3L | 20308498..20308647 | 15..165 | 98 | | Minus |
BO07059.5prime Sequence
907 bp (797 high quality bases) assembled on 2005-12-03
> BO07059.5prime
GAAGTTATCAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGA
TGGCCGAGGCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCG
CTGTTCGGAGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCG
GGCGGGCAACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGT
GCTTCTGCGAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGAT
GCCGGAACCTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGT
GGAGAGCGCCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATA
TGGGCCGCTTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATG
TACGAAAGTGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCA
GGCGGCTGATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGT
GCATGTTGAAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAA
GCAATATCCATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCT
GCTCAAGTACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATC
TCAGCGTGGACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAG
CAGTACCCAGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTT
GTGCGAGAATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCA
AGGACTACGACAGCATCTCCCGGTTGGATCAGTGGTACACCACCATCTTG
CTGCGGATCAGAANGCTGCGGACGAGGATCCCGATCTGCGAGCAAGCTTT
CTAGACC
BO07059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6625-PA | 879 | Snap-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
CG6625-PA | 879 | Snap-RA | 845..876 | 860..891 | 141 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 2070 | CG6625-RA | 157..1037 | 12..891 | 4369 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20314982..20315306 | 424..748 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 20314607..20314924 | 108..425 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 20315396..20315544 | 744..891 | 684 | 98.7 | Plus |
3L | 28110227 | 3L | 20313788..20313884 | 12..108 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:09:13 has no hits.
BO07059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:01 Download gff for
BO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:36 Download gff for
BO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6625-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:20:58 Download gff for
BO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 153..1040 | 7..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:40 Download gff for
BO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaSnap-RA | 153..1040 | 7..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:40 Download gff for
BO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20315398..20315547 | 746..895 | 97 | | Plus |
3L | 20314608..20314923 | 109..424 | 100 | -> | Plus |
3L | 20313784..20313884 | 7..108 | 98 | -> | Plus |
3L | 20314983..20315303 | 425..745 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:20:58 Download gff for
BO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20306884..20306984 | 7..108 | 98 | -> | Plus |
arm_3L | 20307708..20308023 | 109..424 | 100 | -> | Plus |
arm_3L | 20308083..20308403 | 425..745 | 100 | -> | Plus |
arm_3L | 20308498..20308647 | 746..895 | 97 | | Plus |
BO07059.complete Sequence
910 bp (910 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630641
> BO07059.complete
GAAGTTATCAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGA
TGGCCGAGGCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCG
CTGTTCGGAGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCG
GGCGGGCAACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGT
GCTTCTGCGAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGAT
GCCGGAACCTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGT
GGAGAGCGCCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATA
TGGGCCGCTTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATG
TACGAAAGTGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCA
GGCGGCTGATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGT
GCATGTTGAAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAA
GCAATATCCATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCT
GCTCAAGTACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATC
TCAGCGTGGACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAG
CAGTACCCAGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTT
GTGCGAGAATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCA
AGGACTACGACAGCATCTCCCGGTTGGATCAGTGGTACACCACCATCTTG
CTGCGGATCAAGAAGGCTGCGGACGAGGATCCCGATCTGCGAGCAAGCTT
TCTAGACCAT
BO07059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 879 | CG6625-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 2070 | CG6625-RA | 157..1037 | 12..892 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20314982..20315306 | 424..748 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 20314607..20314924 | 108..425 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 20315396..20315544 | 744..892 | 745 | 100 | Plus |
3L | 28110227 | 3L | 20313788..20313884 | 12..108 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:43:14 has no hits.
BO07059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:44 Download gff for
BO07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 1..879 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:18 Download gff for
BO07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 151..1038 | 7..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:21 Download gff for
BO07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 162..1037 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:44 Download gff for
BO07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 151..1038 | 7..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:47 Download gff for
BO07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaSnap-RA | 162..1037 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:47 Download gff for
BO07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20313793..20313884 | 17..108 | 100 | -> | Plus |
3L | 20314608..20314923 | 109..424 | 100 | -> | Plus |
3L | 20314983..20315303 | 425..745 | 100 | -> | Plus |
3L | 20315398..20315544 | 746..894 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:21 Download gff for
BO07059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20306893..20306984 | 17..108 | 100 | -> | Plus |
arm_3L | 20307708..20308023 | 109..424 | 100 | -> | Plus |
arm_3L | 20308083..20308403 | 425..745 | 100 | -> | Plus |
arm_3L | 20308498..20308644 | 746..894 | 98 | | Plus |
BO07059.pep Sequence
Translation from 16 to 910
> BO07059.pep
MGDNEQKALQLMAEAEKKLTQQKGFLGSLFGGSNKVEDAIECYQRAGNMF
KMSKNWTKAGECFCEAATLHARAGSRHDAGTCYVDASNCYKKVDVESAVN
CLMKSIDIYTDMGRFTMAAKHHQSIAEMYESDPNNLAKSIQHYEQAADYF
KGEESVSSANKCMLKVAQYAAQLEDYEKAISIYEQVAASSLESSLLKYSA
KEYFFRAALCHLSVDLLNAQHAIEKYAQQYPAFQDSREFKLIKVLCENLE
EQNIEGFTEAVKDYDSISRLDQWYTTILLRIKKAADEDPDLRASFLDH
BO07059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-PA | 292 | CG6625-PA | 1..292 | 1..292 | 1513 | 100 | Plus |