Clone Sequence Records
BO07060.3prime Sequence
926 bp (778 high quality bases) assembled on 2005-12-03
> BO07060.3prime
ATGGTCTAGAAAGCTTGCCGCCCCATTGTCATCATCATCATCGGTGAATA
GCATAGAAGCCAACACATCGCTGGCCATTTGTGCCTTGTGGAGCTGCGTC
AGCTGCTCCCGGCGCTGCTCCACACTGGCTGCCGGCTCACTCAAAACCTT
CCAGGCGTCCATCTCCTCGAACAGACTGTTTAGCAACTCCATCTCCATGT
CGGCAGGCGACATGTTGTGCTCAGCGACCTCTAGCACATTGAGGTTGCAG
TGCAGCTGGAGGAGATCGCGCGTCAGGCGATGCAGTAGCAGACGCAATCG
ATCGTCCGTTCTGGCGTACACATGCCAATGCTTTCCGGGATCGTCGCGAA
GCAGCAAGGTGTCACACCACTGTGACTGCGGCTGGCGATTGTAGAAAATA
CGCTGGACAGGATCGGCGGCGATGTTGGAAGACTGAAAGTGAGACCCAGG
CTCACTGTCGTCCAGCAAGTCGGAAGTCGGCTCCTTGTTTGCTTCCTGGG
CTTGGATCAACTGAAACTGCAGCGTGGAGACGAGTAGCTGCTCGAATGTC
GTGCAATCCTGGGCCGACTGGAACTCCAATTTCAGGGAGCAACGTGCCGT
GTGCGTCATAATAACGGCCAAAAAGTCTTGGTGCAGCGTGGCGGGCGAAA
ATGTGGGTGCCAACGATTCTGTTTTATCGAGCAGTTTCTTCACATCGAAG
GTAATGAGATGGATTTGCCTAGGGGATGCATCCTCGCCCATCTCGTACGT
TGCCATCAATATGAGTTTCTCTGCCTCAAGAAGATCGACCAGACGCAGGC
TCACTACCATCGCGGCAGATCGTTCCGGCGGTAGTATTCTTTCCTTCTCC
ACGGGTCGCCATTTGAGACGCCTGCTATGCTGATCCTGGCAGGCCCAAAA
CTGCGCCAGCTGGTCGTAATCCTCGG
BO07060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-PA | 1860 | CG9114-RA | 950..1857 | 926..19 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 2315 | CG9114-RA | 1162..2069 | 926..19 | 4510 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15331030..15331487 | 19..476 | 2290 | 100 | Plus |
| X | 23542271 | X | 15331544..15331993 | 477..926 | 2220 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:39:28 has no hits.
BO07060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:02 Download gff for
BO07060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 950..1860 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:38 Download gff for
BO07060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 950..1860 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:08 Download gff for
BO07060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 1009..1926 | 10..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:29:39 Download gff for
BO07060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 1162..2079 | 10..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:29:39 Download gff for
BO07060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15331023..15331487 | 13..476 | 99 | <- | Plus |
| X | 15331544..15331993 | 477..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:08 Download gff for
BO07060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15225056..15225520 | 13..476 | 99 | <- | Plus |
| arm_X | 15225577..15226026 | 477..926 | 99 | | Plus |
BO07060.5prime Sequence
880 bp (838 high quality bases) assembled on 2005-12-03
> BO07060.5prime
GAAGTTATCAGTCGACATGCTGCCGTTTGTCCAGGAGAATGTGCCGGAGA
TGCTGCTCCAGCCGGCCCGGTTGGCCTTCTGCGCCAATCTTCACGTGGGC
CGACCGCGGGATGACCCCACTACATTGGTTTTAGCGAGAAACCTAAAGTT
CTACGAATTCCGGCGCAAGGATCTGGTGCACTACATCGATTTGAAGGTCA
CGAAACTAAAGCAAATAGCCACCCAACTGGAGGCCTACGACGGACCGGTT
TGTCCCTTTCTGTCCAAGCAGGAACCCACTGACGAAAAGGTGGACTGGAG
CATGCTGGATCCGCCGGAGGATTTGCCCCTCAAATTTGGAAAGTTTGTGT
GGCAACGGGAGGGCATCTACCTGTTAATTCAGTGCTGGAAGCATCTCGTC
GTCCTAAAGAGGCCCAAGGATCACGGGGCCAACTTCGAACTGGTGGCGGA
TCACAAGGATGTGGTGGACTACCAGATGGTCGAAGGTCCCATTTCCTTCC
AGGCCGTTGTGGAACTGGAGTTCGGCAATGGCAAGCGTCAGCGTTGTGAT
TTCCAGGAGGATTTCTTAAATGAGGAGCCCAGCACGTCCAAAAATGCGGG
CTTGCCCGCGAAGGATTTCGAGAACCTGCTGCAGGAGGTGCACCGCGCCC
AAGCCGAGCTCGACAGCCAGCGAATGCAAAACCAGAAGGAATTAGCCCAC
GTCCAAGACCTTCTATACTTCGGCACGCCGGGCCAGCGTTCGCTGCTCCT
TGAGGAGAAGCAGCCGCTCCGACGACTCGGCGATGTATGGACTCGGATCT
GCGGCGATTATTTTGTTTGTGGCACTCTGCTAGTCAACATAACTGGCACC
AATCGCCTCACCATAGTCAAGGAGTTGTAT
BO07060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-PA | 1860 | CG9114-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 2315 | CG9114-RA | 212..1076 | 16..880 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15332079..15332943 | 880..16 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:54:49 has no hits.
BO07060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:02 Download gff for
BO07060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:39 Download gff for
BO07060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:43 Download gff for
BO07060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 55..923 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:31 Download gff for
BO07060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 208..1076 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:31 Download gff for
BO07060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15332079..15332947 | 9..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:43 Download gff for
BO07060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15226112..15226980 | 9..880 | 99 | | Minus |
BO07060.complete Sequence
1891 bp assembled on 2008-08-14
GenBank Submission: FJ630642
> BO07060.complete
GAAGTTATCAGTCGACATGCTGCCGTTTGTCCAGGAGAATGTGCCGGAGA
TGCTGCTCCAGCCGGCCCGGTTGGCCTTCTGCGCCAATCTTCACGTGGGC
CGACCGCGGGATGACCCCACTACATTGGTTTTAGCGAGAAACCTAAAGTT
CTACGAATTCCGGCGCAAGGATCTGGTGCACTACATCGATTTGAAGGTCA
CGAAACTAAAGCAAATAGCCACCCAACTGGAGGCCTACGACGGACCGGTT
TGTCCCTTTCTGTCCAAGCAGGAACCCACTGACGAAAAGGTGGACTGGAG
CATGCTGGATCCGCCGGAGGATTTGCCCCTCAAATTTGGAAAGTTTGTGT
GGCAACGGGAGGGCATCTACCTGTTAATTCAGTGCTGGAAGCATCTCGTC
GTCCTAAAGAGGCCCAAGGATCACGGGGCCAACTTCGAACTGGTGGCGGA
TCACAAGGATGTGGTGGACTACCAGATGGTCGAAGGTCCCATTTCCTTCC
AGGCCGTTGTGGAACTGGAGTTCGGCAATGGCAAGCGTCAGCGTTGTGAT
TTCCAGGAGGATTTCTTAAATGAGGAGCCCAGCACGTCCAAAAATGCGGG
CTTGCCCGCGAAGGATTTCGAGAACCTGCTGCAGGAGGTGCACCGCGCCC
AAGCCGAGCTCGACAGCCAGCGAATGCAAAACCAGAAGGAATTAGCCCAC
GTCCAAGACCTTCTATACTTCGGCACGCCGGGCCAGCGTTCGCTGCTCCT
TGAGGAGAAGCAGCCGCTCCGACGACTCGGCGATGTATGGACTCGGATCT
GCGGCGATTATTTTGTTTGTGGCACTCTGCTAGTCAACATAACTGGCACC
AATCGCCTCACCATAGTCAAGGAGTTGTATCCGATTGTTGTAATCGAACC
ACACACCGACTTTAGCGTGGAGCACCGCCTGTACGAGCTGCCTCTGCAGG
CGGATGGCCAACCACCCGAGGACTACGACCAGCTGGCGCAGTTTTGGGCC
TGCCAGGATCAGCATAGCAGGCGTCTCAAATGGCGACCGGTGGAGAAGGA
AAGAATACTACCGCCGGAACGATCTGCCGCGATGGTAGTGAGCCTGCGTC
TGGTCGATCTTCTTGAGGCAGAGAAACTCATATTGATGGCAACGTACGAG
ATGGGCGAGGATGCATCCCCTAGGCAAATCCATCTCATTACCTTCGATGT
GAAGAAACTGCTCGATAAAACAGAATCGTTGGCACCCACATTTTCGCCCG
CCACGCTGCACCAAGACTTTTTGGCCGTTATTATGACGCACACGGCACGT
TGCTCCCTGAAATTGGAGTTCCAGTCGGCCCAGGATTGCACGACATTCGA
GCAGCTACTCGTCTCCACGCTGCAGTTTCAGTTGATCCAAGCCCAGGAAG
CAAACAAGGAGCCGACTTCCGACTTGCTGGACGACAGTGAGCCTGGGTCT
CACTTTCAGTCTTCCAACATCGCCGCCGATCCTGTCCAGCGTATTTTCTA
CAATCGCCAGCCGCAGTCACAGTGGTGTGACACCTTGCTGCTTCGCGACG
ATCCCGGAAAGCATTGGCATGTGTACGCCAGAACGGACGATCGATTGCGT
CTGCTACTGCATCGCCTGACGCGCGATCTCCTCCAGCTGCACTGCAACCT
CAATGTGCTAGAGGTCGCTGAGCACAACATGTCGCCTGCCGACATGGAGA
TGGAGTTGCTAAACAGTCTGTTCGAGGAGATGGACGCCTGGAAGGTTTTG
AGTGAGCCGGCAGCCAGTGTGGAGCAGCGCCGGGAGCAGCTGACGCAGCT
CCACAAGGCACAAATGGCCAGCGATGTGTTGGCTTCTATGCTATTCACCG
ATGATGATGATGACAATGGGGCGGCAAGCTTTCTAGACCAT
BO07060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 1860 | CG9114-PA | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-RA | 2315 | CG9114-RA | 212..2069 | 16..1873 | 9290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15331544..15332943 | 1415..16 | 7000 | 100 | Minus |
| X | 23542271 | X | 15331030..15331487 | 1873..1416 | 2290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:07:24 has no hits.
BO07060.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:09 Download gff for
BO07060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 494..2365 | 9..1882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:37 Download gff for
BO07060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 60..1916 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:50 Download gff for
BO07060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 499..2355 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:05 Download gff for
BO07060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9114-RA | 213..2069 | 17..1875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:05 Download gff for
BO07060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15331028..15331487 | 1416..1875 | 99 | <- | Minus |
| X | 15331544..15332942 | 17..1415 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:37 Download gff for
BO07060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15225061..15225520 | 1416..1875 | 99 | <- | Minus |
| arm_X | 15225577..15226975 | 17..1415 | 100 | | Minus |
BO07060.pep Sequence
Translation from 16 to 1891
> BO07060.pep
MLPFVQENVPEMLLQPARLAFCANLHVGRPRDDPTTLVLARNLKFYEFRR
KDLVHYIDLKVTKLKQIATQLEAYDGPVCPFLSKQEPTDEKVDWSMLDPP
EDLPLKFGKFVWQREGIYLLIQCWKHLVVLKRPKDHGANFELVADHKDVV
DYQMVEGPISFQAVVELEFGNGKRQRCDFQEDFLNEEPSTSKNAGLPAKD
FENLLQEVHRAQAELDSQRMQNQKELAHVQDLLYFGTPGQRSLLLEEKQP
LRRLGDVWTRICGDYFVCGTLLVNITGTNRLTIVKELYPIVVIEPHTDFS
VEHRLYELPLQADGQPPEDYDQLAQFWACQDQHSRRLKWRPVEKERILPP
ERSAAMVVSLRLVDLLEAEKLILMATYEMGEDASPRQIHLITFDVKKLLD
KTESLAPTFSPATLHQDFLAVIMTHTARCSLKLEFQSAQDCTTFEQLLVS
TLQFQLIQAQEANKEPTSDLLDDSEPGSHFQSSNIAADPVQRIFYNRQPQ
SQWCDTLLLRDDPGKHWHVYARTDDRLRLLLHRLTRDLLQLHCNLNVLEV
AEHNMSPADMEMELLNSLFEEMDAWKVLSEPAASVEQRREQLTQLHKAQM
ASDVLASMLFTDDDDDNGAASFLDH
BO07060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9114-PA | 619 | CG9114-PA | 1..619 | 1..619 | 3250 | 100 | Plus |
