Clone BO07062 Report

Search the DGRC for BO07062

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptthoc5-RA
Protein status:BO07062.pep: Imported from assembly
Sequenced Size:1882

Clone Sequence Records

BO07062.3prime Sequence

880 bp (830 high quality bases) assembled on 2005-12-03

> BO07062.3prime
ATGGTCTAGAAAGCTTGCCTGCTTGAACGCGTAGACCGATCCCTTCTTGA
TGTATTTGTAGGGGCGTGAGCGGCTCCGCTTGGCGAAGGCGCTTATGTAA
GGCTTCTCCTTGTTGTACTCAATGGTGTTTTGCATGGATCCCTCGGTTTC
GAGGAATATATCGAAGCTGTAGATGGTGCGGAAGAGCTGCGCGTACAGGA
TGCAGTCGTTGGGCTCCAAATGTTTGGGCTGCAGGGAGTTGGTCCAGAAC
TCCATCATCTTGATCGCCGAATTGTTTTGCGCGGTAAGGCATCCGTTCCA
GTGCACATTCAGAATCCATAGAGGCATTTCCAGTGGATAGTTACTCGGTA
TTCTAATAAAGCACTCCATTTTGGCCGATCCCCGGACGATGACAGCGCGG
TAAGAGTTGTACGTAATACCCTTGTCCGCTGACGAAGAATTCAGTGCGTC
TGAAATTTGCGAGTGAAGCTCCTCATGTGTGATGGCAGTCCATTGGACGA
GACTGCACGACAGGCCGGCTGGATAGATGTTCTCCTGCAAGCTATACAAA
TCGATATCCTTGAAGGTCAGCCCGCGAATCTGCTGGCTTAAACGCTGCCA
AGAGTTCAAGCGCCTGGCAATGCGGTCAATAATCTCCTTGTTGTTCTTAT
TCAAGTTCAGTTCGTGTTTGTACAGCATCGAACTGTTGACGGTTGCAATC
GAGCACATACTTTGCAGCCAACAGAAGGGTTTTCCGTAGTCCTTGGCCTT
GAGGTAGCGCACACATTCCTCGGCTGTTAAATCCGAGCTTCGTAGCTCGT
ATTGGATTCCCGGAATGGGTAATTCATTGCCCAAGTCATTGGGGTACAAA
TGCCGCAATAGGTGGTGAACAAAGTTTGTG

BO07062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2980-PA 1851 thoc5-RA 987..1848 880..19 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 2035 CG2980-RA 1060..1921 880..19 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23955458..23955996 797..259 2695 100 Minus
2R 25286936 2R 23956051..23956292 260..19 1210 100 Minus
2R 25286936 2R 23955322..23955413 880..789 430 97.8 Minus
Blast to na_te.dros performed on 2015-02-10 17:41:36 has no hits.

BO07062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:06 Download gff for BO07062.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-PA 987..1851 16..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:44 Download gff for BO07062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2980-PA 987..1851 16..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:11 Download gff for BO07062.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1060..1929 11..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:09 Download gff for BO07062.3prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 1060..1929 11..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:09 Download gff for BO07062.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23955322..23955406 796..880 100 -> Minus
2R 23955460..23955996 259..795 100 -> Minus
2R 23956053..23956300 11..258 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:11 Download gff for BO07062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19842845..19842929 796..880 100 -> Minus
arm_2R 19842983..19843519 259..795 100 -> Minus
arm_2R 19843576..19843823 11..258 98   Minus

BO07062.5prime Sequence

973 bp (829 high quality bases) assembled on 2005-12-03

> BO07062.5prime
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCACTACACATTTGTTTGACGATTGGAGCGGCTGGA
TCGAATCAGCTCGTTTTGCAGATTCGCTACTTTGATTTTATCAAGTGTGC
CACTGTCTGGGGCCAACTTTACT

BO07062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2980-PA 1851 thoc5-RA 1..850 17..866 4250 100 Plus
CG2980-PA 1851 thoc5-RA 850..954 865..969 525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 2035 CG2980-RA 74..1031 17..973 4750 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23954297..23955093 90..885 3935 99.9 Plus
2R 25286936 2R 23955147..23955235 885..973 430 98.9 Plus
2R 25286936 2R 23954164..23954239 17..92 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:09:17 has no hits.

BO07062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:07 Download gff for BO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-PA 1..958 17..973 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:45 Download gff for BO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2980-PA 1..958 17..973 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:00 Download gff for BO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..1031 17..973 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:51 Download gff for BO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..1031 17..973 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:51 Download gff for BO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23954164..23954238 17..91 100 -> Plus
2R 23954299..23955093 92..885 99 -> Plus
2R 23955148..23955235 886..973 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:00 Download gff for BO07062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19841687..19841761 17..91 100 -> Plus
arm_2R 19841822..19842616 92..885 99 -> Plus
arm_2R 19842671..19842758 886..973 98   Plus

BO07062.complete Sequence

1882 bp assembled on 2008-08-14

GenBank Submission: KX794502

> BO07062.complete
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCCACTACACATTTGTTTGACGATTGGAGCGGCTGG
ATCGAATCAGCTCGTTTTGCAGATTCGCTACTTTGATTTTATCAAGTGTG
CCACTGTCTGGGGCCAACTTAACTGCTCCAGGAATGCCAACGGCCAGGGT
GACACAAACTTTGTTCACCACCTATTGCGGCATTTGTACCCCAATGACTT
GGGCAATGAATTACCCATTCCGGGAATCCAATACGAGCTACGAAGCTCGG
ATTTAACAGCCGAGGAATGTGTGCGCTACCTCAAGGCCAAGGACTACGGA
AAACCCTTCTGTTGGCTGCAAAGTATGTGCTCGATTGCAACCGTCAACAG
TTCGATGCTGTACAAACACGAACTGAACTTGAATAAGAACAACAAGGAGA
TTATTGACCGCATTGCCAGGCGCTTGAACTCTTGGCAGCGTTTAAGCCAG
CAGATTCGCGGGCTGACCTTCAAGGATATCGATTTGTATAGCTTGCAGGA
GAACATCTATCCAGCCGGCCTGTCGTGCAGTCTCGTCCAATGGACTGCCA
TCACACATGAGGAGCTTCACTCGCAAATTTCAGACGCACTGAATTCTTCG
TCAGCGGACAAGGGTATTACGTACAACTCTTACCGCGCTGTCATCGTCCG
GGGATCGGCCAAAATGGAGTGCTTTATTAGAATACCGAGTAACTATCCAC
TGGAAATGCCTCTATGGATTCTGAATGTGCACTGGAACGGATGCCTTACC
GCGCAAAACAATTCGGCGATCAAGATGATGGAGTTCTGGACCAACTCCCT
GCAGCCCAAACATTTGGAGCCCAACGACTGCATCCTGTACGCGCAGCTCT
TCCGCACCATCTACAGCTTCGATATATTCCTCGAAACCGAGGGATCCATG
CAAAACACCATTGAGTACAACAAGGAGAAGCCTTACATAAGCGCCTTCGC
CAAGCGGAGCCGCTCACGCCCCTACAAATACATCAAGAAGGGATCGGTCT
ACGCGTTCAAGCAGGCAAGCTTTCTAGACCAT

BO07062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 1851 CG2980-PA 1..1848 17..1864 9240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-RA 2035 CG2980-RA 74..1921 17..1864 9240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23954297..23955093 90..886 3985 100 Plus
2R 25286936 2R 23955458..23955996 1086..1624 2695 100 Plus
2R 25286936 2R 23956051..23956292 1623..1864 1210 100 Plus
2R 25286936 2R 23955147..23955260 886..999 570 100 Plus
2R 25286936 2R 23955318..23955413 999..1094 450 97.9 Plus
2R 25286936 2R 23954164..23954239 17..92 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:15:46 has no hits.

BO07062.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:18 Download gff for BO07062.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 72..1927 17..1872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:10 Download gff for BO07062.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..1921 17..1866 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:48 Download gff for BO07062.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 72..1919 17..1866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:07 Download gff for BO07062.complete
Subject Subject Range Query Range Percent Splice Strand
thoc5-RA 74..1921 17..1866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:07 Download gff for BO07062.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23954164..23954238 17..91 100 -> Plus
2R 23955460..23955996 1088..1624 100 -> Plus
2R 23954299..23955093 92..886 100 -> Plus
2R 23955148..23955260 887..999 100 -> Plus
2R 23955319..23955406 1000..1087 100 -> Plus
2R 23956053..23956292 1625..1866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:10 Download gff for BO07062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19843576..19843815 1625..1866 99   Plus
arm_2R 19841687..19841761 17..91 100 -> Plus
arm_2R 19841822..19842616 92..886 100 -> Plus
arm_2R 19842671..19842783 887..999 100 -> Plus
arm_2R 19842842..19842929 1000..1087 100 -> Plus
arm_2R 19842983..19843519 1088..1624 100 -> Plus

BO07062.pep Sequence

Translation from 16 to 1882

> BO07062.pep
METILNTQFDQLQKAIEGIKEAKSKGQSTDEARIATTLMFVALKHANREV
KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDT
SLELLSEAEYSSELPDMPNDAEELSSHKQHLHRLDCELRLRKALDKQYSA
LLSSKQELLQDNLSHAQRYVSFAPALRTLQSATKPLHDALQLSLDVEWKL
SAVVKYLPKPLYVLFIVLQSLQRVSEEQSFTAEVVGYESEAQMQELLKEK
KCSTLNYRQTKKESGDREKIADKNNLDDSLAPHPLHICLTIGAAGSNQLV
LQIRYFDFIKCATVWGQLNCSRNANGQGDTNFVHHLLRHLYPNDLGNELP
IPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSIATVNSSMLYK
HELNLNKNNKEIIDRIARRLNSWQRLSQQIRGLTFKDIDLYSLQENIYPA
GLSCSLVQWTAITHEELHSQISDALNSSSADKGITYNSYRAVIVRGSAKM
ECFIRIPSNYPLEMPLWILNVHWNGCLTAQNNSAIKMMEFWTNSLQPKHL
EPNDCILYAQLFRTIYSFDIFLETEGSMQNTIEYNKEKPYISAFAKRSRS
RPYKYIKKGSVYAFKQASFLDH

BO07062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
thoc5-PA 616 CG2980-PA 1..616 1..616 3198 100 Plus