Clone Sequence Records
BO07062.3prime Sequence
880 bp (830 high quality bases) assembled on 2005-12-03
> BO07062.3prime
ATGGTCTAGAAAGCTTGCCTGCTTGAACGCGTAGACCGATCCCTTCTTGA
TGTATTTGTAGGGGCGTGAGCGGCTCCGCTTGGCGAAGGCGCTTATGTAA
GGCTTCTCCTTGTTGTACTCAATGGTGTTTTGCATGGATCCCTCGGTTTC
GAGGAATATATCGAAGCTGTAGATGGTGCGGAAGAGCTGCGCGTACAGGA
TGCAGTCGTTGGGCTCCAAATGTTTGGGCTGCAGGGAGTTGGTCCAGAAC
TCCATCATCTTGATCGCCGAATTGTTTTGCGCGGTAAGGCATCCGTTCCA
GTGCACATTCAGAATCCATAGAGGCATTTCCAGTGGATAGTTACTCGGTA
TTCTAATAAAGCACTCCATTTTGGCCGATCCCCGGACGATGACAGCGCGG
TAAGAGTTGTACGTAATACCCTTGTCCGCTGACGAAGAATTCAGTGCGTC
TGAAATTTGCGAGTGAAGCTCCTCATGTGTGATGGCAGTCCATTGGACGA
GACTGCACGACAGGCCGGCTGGATAGATGTTCTCCTGCAAGCTATACAAA
TCGATATCCTTGAAGGTCAGCCCGCGAATCTGCTGGCTTAAACGCTGCCA
AGAGTTCAAGCGCCTGGCAATGCGGTCAATAATCTCCTTGTTGTTCTTAT
TCAAGTTCAGTTCGTGTTTGTACAGCATCGAACTGTTGACGGTTGCAATC
GAGCACATACTTTGCAGCCAACAGAAGGGTTTTCCGTAGTCCTTGGCCTT
GAGGTAGCGCACACATTCCTCGGCTGTTAAATCCGAGCTTCGTAGCTCGT
ATTGGATTCCCGGAATGGGTAATTCATTGCCCAAGTCATTGGGGTACAAA
TGCCGCAATAGGTGGTGAACAAAGTTTGTG
BO07062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2980-PA | 1851 | thoc5-RA | 987..1848 | 880..19 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 2035 | CG2980-RA | 1060..1921 | 880..19 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23955458..23955996 | 797..259 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 23956051..23956292 | 260..19 | 1210 | 100 | Minus |
2R | 25286936 | 2R | 23955322..23955413 | 880..789 | 430 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:41:36 has no hits.
BO07062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:06 Download gff for
BO07062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-PA | 987..1851 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:44 Download gff for
BO07062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2980-PA | 987..1851 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:11 Download gff for
BO07062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 1060..1929 | 11..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:09 Download gff for
BO07062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 1060..1929 | 11..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:09 Download gff for
BO07062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23955322..23955406 | 796..880 | 100 | -> | Minus |
2R | 23955460..23955996 | 259..795 | 100 | -> | Minus |
2R | 23956053..23956300 | 11..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:11 Download gff for
BO07062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19842845..19842929 | 796..880 | 100 | -> | Minus |
arm_2R | 19842983..19843519 | 259..795 | 100 | -> | Minus |
arm_2R | 19843576..19843823 | 11..258 | 98 | | Minus |
BO07062.5prime Sequence
973 bp (829 high quality bases) assembled on 2005-12-03
> BO07062.5prime
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCACTACACATTTGTTTGACGATTGGAGCGGCTGGA
TCGAATCAGCTCGTTTTGCAGATTCGCTACTTTGATTTTATCAAGTGTGC
CACTGTCTGGGGCCAACTTTACT
BO07062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2980-PA | 1851 | thoc5-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG2980-PA | 1851 | thoc5-RA | 850..954 | 865..969 | 525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 2035 | CG2980-RA | 74..1031 | 17..973 | 4750 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23954297..23955093 | 90..885 | 3935 | 99.9 | Plus |
2R | 25286936 | 2R | 23955147..23955235 | 885..973 | 430 | 98.9 | Plus |
2R | 25286936 | 2R | 23954164..23954239 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:09:17 has no hits.
BO07062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:07 Download gff for
BO07062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-PA | 1..958 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:45 Download gff for
BO07062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2980-PA | 1..958 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:00 Download gff for
BO07062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..1031 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:51 Download gff for
BO07062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..1031 | 17..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:51 Download gff for
BO07062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23954164..23954238 | 17..91 | 100 | -> | Plus |
2R | 23954299..23955093 | 92..885 | 99 | -> | Plus |
2R | 23955148..23955235 | 886..973 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:00 Download gff for
BO07062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19841687..19841761 | 17..91 | 100 | -> | Plus |
arm_2R | 19841822..19842616 | 92..885 | 99 | -> | Plus |
arm_2R | 19842671..19842758 | 886..973 | 98 | | Plus |
BO07062.complete Sequence
1882 bp assembled on 2008-08-14
GenBank Submission: KX794502
> BO07062.complete
GAAGTTATCAGTCGACATGGAAACAATATTGAACACGCAGTTCGATCAGC
TGCAAAAGGCCATAGAGGGAATTAAGGAGGCGAAGAGCAAGGGGCAATCG
ACGGATGAGGCTCGCATTGCCACCACCTTGATGTTCGTGGCTCTGAAGCA
CGCCAACCGCGAGGTGAAGCACAAGATCAAAGCGGGGCGCGACAAGCTGC
ACCTGGAAAAGTGCAAGGTGGACCTCAGCCGGCTGCAGCTGCAGAATCTT
CTGTACGAAGTGAGCCACCTGAAGAAGGAGATTGTGCGCTGCCAGAAGTT
CAAGAGCAGGGACACCAGCTTGGAGCTGCTCTCGGAAGCCGAGTACTCCA
GCGAGCTGCCAGACATGCCCAACGACGCGGAGGAGCTGTCCAGCCACAAG
CAGCACCTTCATCGCCTCGACTGCGAGCTGCGTCTGCGGAAGGCACTCGA
CAAGCAGTACAGCGCCCTGCTGAGCTCCAAGCAGGAACTGCTCCAGGACA
ATCTTAGCCACGCCCAGCGGTACGTCTCCTTCGCACCCGCCTTGCGCACT
CTGCAGAGCGCCACAAAGCCGCTGCACGATGCACTCCAGCTATCCCTGGA
CGTGGAATGGAAGCTAAGCGCAGTGGTCAAGTACCTGCCCAAGCCGCTCT
ACGTTTTGTTCATTGTCCTGCAATCGCTGCAGCGGGTCAGCGAGGAGCAG
TCCTTCACCGCCGAGGTGGTTGGCTATGAGAGCGAGGCTCAAATGCAGGA
GTTGCTTAAGGAGAAAAAGTGCTCCACATTGAACTACAGACAGACTAAAA
AGGAAAGTGGAGACCGGGAAAAGATTGCCGATAAAAACAACTTGGACGAC
TCACTCGCTCCTCACCCACTACACATTTGTTTGACGATTGGAGCGGCTGG
ATCGAATCAGCTCGTTTTGCAGATTCGCTACTTTGATTTTATCAAGTGTG
CCACTGTCTGGGGCCAACTTAACTGCTCCAGGAATGCCAACGGCCAGGGT
GACACAAACTTTGTTCACCACCTATTGCGGCATTTGTACCCCAATGACTT
GGGCAATGAATTACCCATTCCGGGAATCCAATACGAGCTACGAAGCTCGG
ATTTAACAGCCGAGGAATGTGTGCGCTACCTCAAGGCCAAGGACTACGGA
AAACCCTTCTGTTGGCTGCAAAGTATGTGCTCGATTGCAACCGTCAACAG
TTCGATGCTGTACAAACACGAACTGAACTTGAATAAGAACAACAAGGAGA
TTATTGACCGCATTGCCAGGCGCTTGAACTCTTGGCAGCGTTTAAGCCAG
CAGATTCGCGGGCTGACCTTCAAGGATATCGATTTGTATAGCTTGCAGGA
GAACATCTATCCAGCCGGCCTGTCGTGCAGTCTCGTCCAATGGACTGCCA
TCACACATGAGGAGCTTCACTCGCAAATTTCAGACGCACTGAATTCTTCG
TCAGCGGACAAGGGTATTACGTACAACTCTTACCGCGCTGTCATCGTCCG
GGGATCGGCCAAAATGGAGTGCTTTATTAGAATACCGAGTAACTATCCAC
TGGAAATGCCTCTATGGATTCTGAATGTGCACTGGAACGGATGCCTTACC
GCGCAAAACAATTCGGCGATCAAGATGATGGAGTTCTGGACCAACTCCCT
GCAGCCCAAACATTTGGAGCCCAACGACTGCATCCTGTACGCGCAGCTCT
TCCGCACCATCTACAGCTTCGATATATTCCTCGAAACCGAGGGATCCATG
CAAAACACCATTGAGTACAACAAGGAGAAGCCTTACATAAGCGCCTTCGC
CAAGCGGAGCCGCTCACGCCCCTACAAATACATCAAGAAGGGATCGGTCT
ACGCGTTCAAGCAGGCAAGCTTTCTAGACCAT
BO07062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 1851 | CG2980-PA | 1..1848 | 17..1864 | 9240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-RA | 2035 | CG2980-RA | 74..1921 | 17..1864 | 9240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23954297..23955093 | 90..886 | 3985 | 100 | Plus |
2R | 25286936 | 2R | 23955458..23955996 | 1086..1624 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 23956051..23956292 | 1623..1864 | 1210 | 100 | Plus |
2R | 25286936 | 2R | 23955147..23955260 | 886..999 | 570 | 100 | Plus |
2R | 25286936 | 2R | 23955318..23955413 | 999..1094 | 450 | 97.9 | Plus |
2R | 25286936 | 2R | 23954164..23954239 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:15:46 has no hits.
BO07062.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:18 Download gff for
BO07062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 72..1927 | 17..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:10 Download gff for
BO07062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..1921 | 17..1866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:48 Download gff for
BO07062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 72..1919 | 17..1866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:07 Download gff for
BO07062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
thoc5-RA | 74..1921 | 17..1866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:07 Download gff for
BO07062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23954164..23954238 | 17..91 | 100 | -> | Plus |
2R | 23955460..23955996 | 1088..1624 | 100 | -> | Plus |
2R | 23954299..23955093 | 92..886 | 100 | -> | Plus |
2R | 23955148..23955260 | 887..999 | 100 | -> | Plus |
2R | 23955319..23955406 | 1000..1087 | 100 | -> | Plus |
2R | 23956053..23956292 | 1625..1866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:10 Download gff for
BO07062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19843576..19843815 | 1625..1866 | 99 | | Plus |
arm_2R | 19841687..19841761 | 17..91 | 100 | -> | Plus |
arm_2R | 19841822..19842616 | 92..886 | 100 | -> | Plus |
arm_2R | 19842671..19842783 | 887..999 | 100 | -> | Plus |
arm_2R | 19842842..19842929 | 1000..1087 | 100 | -> | Plus |
arm_2R | 19842983..19843519 | 1088..1624 | 100 | -> | Plus |
BO07062.pep Sequence
Translation from 16 to 1882
> BO07062.pep
METILNTQFDQLQKAIEGIKEAKSKGQSTDEARIATTLMFVALKHANREV
KHKIKAGRDKLHLEKCKVDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDT
SLELLSEAEYSSELPDMPNDAEELSSHKQHLHRLDCELRLRKALDKQYSA
LLSSKQELLQDNLSHAQRYVSFAPALRTLQSATKPLHDALQLSLDVEWKL
SAVVKYLPKPLYVLFIVLQSLQRVSEEQSFTAEVVGYESEAQMQELLKEK
KCSTLNYRQTKKESGDREKIADKNNLDDSLAPHPLHICLTIGAAGSNQLV
LQIRYFDFIKCATVWGQLNCSRNANGQGDTNFVHHLLRHLYPNDLGNELP
IPGIQYELRSSDLTAEECVRYLKAKDYGKPFCWLQSMCSIATVNSSMLYK
HELNLNKNNKEIIDRIARRLNSWQRLSQQIRGLTFKDIDLYSLQENIYPA
GLSCSLVQWTAITHEELHSQISDALNSSSADKGITYNSYRAVIVRGSAKM
ECFIRIPSNYPLEMPLWILNVHWNGCLTAQNNSAIKMMEFWTNSLQPKHL
EPNDCILYAQLFRTIYSFDIFLETEGSMQNTIEYNKEKPYISAFAKRSRS
RPYKYIKKGSVYAFKQASFLDH
BO07062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc5-PA | 616 | CG2980-PA | 1..616 | 1..616 | 3198 | 100 | Plus |