Clone Sequence Records
BO07063.3prime Sequence
931 bp (834 high quality bases) assembled on 2005-12-03
> BO07063.3prime
ATGGTCTAGAAAGCTTGCGTCACCGCTATCCGTCGTATCCGCTGGGGCAG
CATCAGCTGCAGGTTCTGGCTCAGATGCAATAGCTGTAGCGGGCGGGTCG
TCCACCGTGTTGTCTTTTTGTGTCTTCCACATCTTAGCTGCAGCCAGCAA
CTTGAGATTGGGTCGAGCCATTTCGTCCTCGGGAAAGATGTAGTCGAATA
CCTCCTCCCAACCTTCCTCGACGCCATTGTCCGAGACGATCTTTTGCCGC
TTCTTGATGCGCCGCGGCATCTTGTCCATTACCTTTTGCATCTCCTGCGA
ATCGGAGGCGTCGCGTTCAAAGTCGCGCCATGCCTCTAGCAACAGAACAC
GCGACTCCTTGTCTCCCAGCTGACGCAACATCTCGTTGGCTCGCTCATAG
ATTCTCCTTGCCAGCTGCACGTTCAGCTCCGCATCTGGCCCGCTGTCGCC
GTGGCTGAGGCCCATCTCGAACTTGGCAAACGACATCCACACTTTCACAT
GCTGCGTCCGCTCAAGGAGTCGCTCGTAAAGCTGTCTGGCTAGCTCTGTT
TCGCCTAGGGCTACCTCGAAGTCGATGTACGCCTTCCACAGCAGCTCTGG
CATGTCCAGGCGCGGCTGCTGCACCGCCAGCTCGAAAATGGCTCTCGCCC
GGTCCGTGTCGCCCAACAGATTCTCCAGCTCGGCAAACTTCATCCAAGTG
ACACAATTCTCCGGTCCAAACTCCAGGAACTTCTCGTACAGCATGCGGCA
GCGCTCGAACTCACGCAACTGAATCTCCAGATCAATATAGCCTCTGAAGA
GCTTATCTCTGGGACACATGCCGATGGCCAAGCCCAGAGCTTTGCGTGCT
CGCTGCAGCTCCTTGCAGCGGATCTCGAATTGGGCGTACAGCAGCCAAAG
CTTGCTGAAGGTGACTGCTTGTGAGGTATTA
BO07063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3193-PA | 2109 | crn-RA | 1211..2106 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crn-RA | 2332 | CG3193-RA | 1313..2226 | 931..19 | 4545 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2247700..2248613 | 19..931 | 4520 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:43:53 has no hits.
BO07063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:08 Download gff for
BO07063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-PA | 1194..2109 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:47 Download gff for
BO07063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3193-PA | 1194..2109 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:15 Download gff for
BO07063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 1314..2226 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:39 Download gff for
BO07063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 1314..2226 | 19..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:39 Download gff for
BO07063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2247700..2248612 | 19..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:15 Download gff for
BO07063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2141733..2142645 | 19..930 | 99 | | Plus |
BO07063.5prime Sequence
905 bp (787 high quality bases) assembled on 2005-12-03
> BO07063.5prime
GAAGTTATCAGTCGACATGGAGCGGCCACAGAAGATGCCCAAGGTGGCCA
AGGTCAAAAACAAAGCGCCGGCGGAGGTGCAAATTACGGCGGAGCAGTTG
CTCCGTGAGGCCAAGGAGCGAGATCTGGAGATTCTGCCGCCGCCGCCAAA
GCAGAAGATCTCCGATCCCGCCGAGTTGGCAGACTATCAGCAGCGGAAGC
GAAAGACCTTCGAGGACAATCTCCGCAAGAACCGCATGGTAGTCAGCCAT
TGGATCAAATATGCTCAGTGGGAGGAGCAGCAGCAGGAGATCCAGCGGGC
GCGCTCTATCTGGGAGCGGGCGTTGGACAATGAGCACCGGAACGTGACCC
TCTGGCTGAAATACGCCGAGATGGAGATGAAGAACAAGCAGGTGAATCAT
GCTCGCAATCTGTGGGATCGGGCAGTGACCATCATGCCGCGAGTCAACCA
GTTCTGGTACAAGTACACCTACATGGAGGAGATGCTGGAGAATGTGGCAG
GGGCGCGACAGGTGTTCGAGCGCTGGATGGAGTGGCAACCGGAGGAGCAG
GCCTGGCAGACCTACGTCAACTTCGAGCTGCGCTACAAGGAGATCGACCG
GGCACGGGAGATCTACGAGCGATTTGTCTATGTGCACCCGGACGTGAAGA
ACTGGATAAAGTTCGCCCGCTTTGAGGAGTCTCATGGGTTTATCCACGGC
TCTCGGCGGGTATTTGAGCGCGCTGTGGAGTTCTTTGGTGACGACTACAT
CGAGGAGCGCCTGTTCATCGCCTTTGCACGTTTCGAGGAGGGTCAAAAGG
AGCACGACAGGGCGCGCATCATCTACAAGTACGCTTTAGATCACCTACCT
AAAGATCGCACACAGGAGCTGTTCAAGGGCTATACGAAACACGAGAAAAA
GTACG
BO07063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3193-PA | 2109 | crn-RA | 1..889 | 17..905 | 4420 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crn-RA | 2332 | CG3193-RA | 120..1009 | 16..905 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2248917..2249771 | 905..51 | 4260 | 99.9 | Minus |
| X | 23542271 | X | 2249826..2249864 | 54..16 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:55:16 has no hits.
BO07063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:09 Download gff for
BO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:48 Download gff for
BO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3193-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:45 Download gff for
BO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 115..1009 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:41 Download gff for
BO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 115..1009 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:41 Download gff for
BO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2248917..2249769 | 53..905 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:45 Download gff for
BO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2142950..2143802 | 53..905 | 99 | <- | Minus |
BO07063.complete Sequence
2140 bp assembled on 2008-08-14
GenBank Submission: FJ630643
> BO07063.complete
GAAGTTATCAGTCGACATGGAGCGGCCACAGAAGATGCCCAAGGTGGCCA
AGGTCAAAAACAAAGCGCCGGCGGAGGTGCAAATTACGGCGGAGCAGTTG
CTCCGTGAGGCCAAGGAGCGAGATCTGGAGATTCTGCCGCCGCCGCCAAA
GCAGAAGATCTCCGATCCCGCCGAGTTGGCAGACTATCAGCAGCGGAAGC
GAAAGACCTTCGAGGACAATCTCCGCAAGAACCGCATGGTAGTCAGCCAT
TGGATCAAATATGCTCAGTGGGAGGAGCAGCAGCAGGAGATCCAGCGGGC
GCGCTCTATCTGGGAGCGGGCGTTGGACAATGAGCACCGGAACGTGACCC
TCTGGCTGAAATACGCCGAGATGGAGATGAAGAACAAGCAGGTGAATCAT
GCTCGCAATCTGTGGGATCGGGCAGTGACCATCATGCCGCGAGTCAACCA
GTTCTGGTACAAGTACACCTACATGGAGGAGATGCTGGAGAATGTGGCAG
GGGCGCGACAGGTGTTCGAGCGCTGGATGGAGTGGCAACCGGAGGAGCAG
GCCTGGCAGACCTACGTCAACTTCGAGCTGCGCTACAAGGAGATCGACCG
GGCACGGGAGATCTACGAGCGATTTGTCTATGTGCACCCGGACGTGAAGA
ACTGGATAAAGTTCGCCCGCTTTGAGGAGTCTCATGGGTTTATCCACGGC
TCTCGGCGGGTATTTGAGCGCGCTGTGGAGTTCTTTGGTGACGACTACAT
CGAGGAGCGCCTGTTCATCGCCTTTGCACGTTTCGAGGAGGGTCAAAAGG
AGCACGACAGGGCGCGCATCATCTACAAGTACGCTTTAGATCACCTACCT
AAAGATCGCACACAGGAGCTGTTCAAGGCCTATACGAAACACGAGAAAAA
GTACGGCGACAGAGCGGGTATTGAGGATGTGATTGTTTCCAAGCGCAAGT
ACCAGTACGAGCAGGAGGTGGCCGCCAATCCCACCAACTACGATGCCTGG
TTCGACTATTTGCGCTTGATTGAGGCTGAGGGCGATCGGGATCAGATCCG
TGAGACGTACGAACGGGCCATTTCCAACGTGCCGCCTGCCAATGAAAAGA
ACTTCTGGCGACGCTACATTTACCTTTGGATCAATTATGCTTTGTACGAG
GAGCTTGAAGCGGAGGACGCGGAACGCACGCGGCAGATCTACAAGACCTG
TCTGGAGCTAATACCTCACAAGCAGTTCACCTTCAGCAAGCTTTGGCTGC
TGTACGCCCAATTCGAGATCCGCTGCAAGGAGCTGCAGCGAGCACGCAAA
GCTCTGGGCTTGGCCATCGGCATGTGTCCCAGAGATAAGCTCTTCAGAGG
CTATATTGATCTGGAGATTCAGTTGCGTGAGTTCGAGCGCTGCCGCATGC
TGTACGAGAAGTTCCTGGAGTTTGGACCGGAGAATTGTGTCACTTGGATG
AAGTTTGCCGAGCTGGAGAATCTGTTGGGCGACACGGACCGGGCGAGAGC
CATTTTCGAGCTGGCGGTGCAGCAGCCGCGCCTGGACATGCCAGAGCTGC
TGTGGAAGGCGTACATCGACTTCGAGGTAGCCCTAGGCGAAACAGAGCTA
GCCAGACAGCTTTACGAGCGACTCCTTGAGCGGACGCAGCATGTGAAAGT
GTGGATGTCGTTTGCCAAGTTCGAGATGGGCCTCAGCCACGGCGACAGCG
GGCCAGATGCGGAGCTGAACGTGCAGCTGGCAAGGAGAATCTATGAGCGA
GCCAACGAGATGTTGCGTCAGCTGGGAGACAAGGAGTCGCGTGTTCTGTT
GCTAGAGGCATGGCGCGACTTTGAACGCGACGCCTCCGATTCGCAGGAGA
TGCAAAAGGTAATGGACAAGATGCCGCGGCGCATCAAGAAGCGGCAAAAG
ATCGTCTCGGACAATGGCGTCGAGGAAGGTTGGGAGGAGGTATTCGACTA
CATCTTTCCCGAGGACGAAATGGCTCGACCCAATCTCAAGTTGCTGGCTG
CAGCTAAGATGTGGAAGACACAAAAAGACAACACGGTGGACGACCCGCCC
GCTACAGCTATTGCATCTGAGCCAGAACCTGCAGCTGATGCTGCCCCAGC
GGATACGACGGATAGCGGTGACGCAAGCTTTCTAGACCAT
BO07063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crn-RA | 2109 | CG3193-PA | 1..2106 | 17..2122 | 10530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crn-RA | 2332 | CG3193-RA | 120..2226 | 16..2122 | 10535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2247700..2249771 | 2122..51 | 10360 | 100 | Minus |
| X | 23542271 | X | 2249826..2249864 | 54..16 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:55:17 has no hits.
BO07063.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:23 Download gff for
BO07063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 113..2224 | 9..2122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:10 Download gff for
BO07063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 121..2226 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:42 Download gff for
BO07063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 119..2224 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:50 Download gff for
BO07063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crn-RA | 121..2226 | 17..2124 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:50 Download gff for
BO07063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2247697..2249769 | 53..2124 | 99 | <- | Minus |
| X | 2249828..2249863 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:10 Download gff for
BO07063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2141730..2143802 | 53..2124 | 99 | <- | Minus |
| arm_X | 2143861..2143896 | 17..52 | 100 | | Minus |
BO07063.pep Sequence
Translation from 16 to 2140
> BO07063.pep
MERPQKMPKVAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISD
PAELADYQQRKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWE
RALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKY
TYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRAREIY
ERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLF
IAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRA
GIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYER
AISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIP
HKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLE
IQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELA
VQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFA
KFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWR
DFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPED
EMARPNLKLLAAAKMWKTQKDNTVDDPPATAIASEPEPAADAAPADTTDS
GDASFLDH
BO07063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crn-PA | 702 | CG3193-PA | 1..702 | 1..702 | 3724 | 100 | Plus |
| fand-PA | 883 | CG6197-PA | 397..763 | 213..565 | 235 | 25.7 | Plus |
| fand-PA | 883 | CG6197-PA | 397..712 | 79..419 | 213 | 21.4 | Plus |
| CG6841-PB | 931 | CG6841-PB | 302..778 | 79..554 | 211 | 22.6 | Plus |
| CG6841-PA | 931 | CG6841-PA | 302..778 | 79..554 | 211 | 22.6 | Plus |
| fand-PA | 883 | CG6197-PA | 439..790 | 19..355 | 161 | 20.7 | Plus |
