Clone BO07065 Report

Search the DGRC for BO07065

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG8379-RA
Protein status:BO07065.pep: Imported from assembly
Sequenced Size:2152

Clone Sequence Records

BO07065.3prime Sequence

918 bp (834 high quality bases) assembled on 2005-12-03

> BO07065.3prime
ATGGTCTAGAAAGCTTGCAGCAAAAGAAGGCAACGCTTTTGCTTCTGGCA
CTGCTGTTGCTGAAGCCGGAGTGGCTGTACCGGCCGAAACGGATGTCATA
GAGGAACTGAGGAGAATTTCCTGGTCCGGAATAACAGATACTGCCTCCTT
CACATAGCCGTAGATGTGCTTGCGCGTATCGTTGACAACATCGCGAACCA
TCAACTTAAAGAAGTTGGTGTGCAGCGGCGTTTCTGTGTAACGTTCGTAT
TGGTCCAGGGAGTCCTGCAGTTTGAGCGTTAGGTCGTAGTTCTTGCGCAC
CACGTCGAGTATCTGCTCCTCCGTGGGCGTAGAGAGGCCTTGTTCGGCCA
GCCATTCCTTGATCTTGTTCTGAAAGTGCTTAACAATGGCCAGGATATTT
ACCAAAGCGTTTAAGAGCTTGATTACATCGTCTTTGTATTCGCAGTCCGG
CATCGTTGTATAGCGAAGAACCATGGCATGTATTTCCGTAAATACCTTCT
CCTCGCGGTTCAGTTCGTAGTAGAGCTCATCATAGCTATTTGTTGTGGCC
AGGAAAGTATCACCGTACGTAATAAACAGATTAAATATATTCACCACCTG
TAGCGACAGATGAAAAATGTTGCACTTTTTAACCAGCGTCTGTTCTTGGT
TGACCAAGAACCGCAGAAGACCAATGAGAGCCGACCAAAGTTCCTTCCAC
GGATAATTGAGCCGCACTCTACATCTCTTTTGATAGCACAAGATTCGATG
GATAACTCCAATGCAGAGCAGATACAGCTCCATCGGGAACTTTTTCATCA
AATGCGATACAATGAACTCCACCAGGAGGTCCAGTAGAGTGGCAGCCAAA
GGCTGGGACTTGCCCACCCGATCCACATTCAGCTTGCGATGACGCATCTG
CGCCCGATGCAGCATGAC

BO07065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-PA 2121 CG8379-RA 1219..2118 918..19 4500 100 Minus
CG8379-PB 2124 CG8379-RB 1222..2121 918..19 4500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-RB 2450 CG8379-RB 1366..2265 918..19 4500 100 Minus
CG8379-RA 2447 CG8379-RA 1363..2262 918..19 4500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8826642..8827094 471..19 2265 100 Minus
3R 32079331 3R 8826141..8826588 918..471 2240 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:46:25 has no hits.

BO07065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:12 Download gff for BO07065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-PB 1222..2124 18..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:52 Download gff for BO07065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-PB 1222..2124 18..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:17 Download gff for BO07065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 1363..2268 10..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:01 Download gff for BO07065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 1363..2268 10..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:01 Download gff for BO07065.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8826141..8826588 471..918 100 -> Minus
3R 8826643..8827100 10..470 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:17 Download gff for BO07065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4651863..4652310 471..918 100 -> Minus
arm_3R 4652365..4652822 10..470 99   Minus

BO07065.5prime Sequence

905 bp (717 high quality bases) assembled on 2005-12-03

> BO07065.5prime
GAAGTTATCAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCA
CCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGG
GGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCT
GCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACA
ACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGG
TGCATCGAAATGCTTGACACGGATCATCCTAAGCGGCTGTGCAACAGCCT
ACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAG
AACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGAC
GAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGA
TGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGG
TTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATG
ATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTT
CCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCA
ACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATA
CTCGCTGATGAGCTGGCTTTNAATGGCTATGGCCAAATGATATCGCAATC
GCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAAT
CCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTTGTG
TCGGATGAAGGATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGGCCT
TCTAC

BO07065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-PA 2121 CG8379-RA 1..889 17..905 4426 99.8 Plus
CG8379-PB 2124 CG8379-RB 259..892 272..905 3151 99.8 Plus
CG8379-PB 2124 CG8379-RB 1..257 17..273 1285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-RA 2447 CG8379-RA 144..1033 16..905 4439 99.9 Plus
CG8379-RB 2450 CG8379-RB 144..1036 16..905 4399 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8824954..8825408 272..726 2264 99.8 Plus
3R 32079331 3R 8824686..8824889 69..272 1020 100 Plus
3R 32079331 3R 8825632..8825811 726..905 900 100 Plus
3R 32079331 3R 8824554..8824610 16..72 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:08:03 has no hits.

BO07065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:13 Download gff for BO07065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:54 Download gff for BO07065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:47 Download gff for BO07065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 140..1033 9..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:04 Download gff for BO07065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 140..1033 9..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:04 Download gff for BO07065.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8824550..8824608 9..70 95 -> Plus
3R 8824688..8824889 71..272 100 -> Plus
3R 8824955..8825408 273..726 99 -> Plus
3R 8825633..8825811 727..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:47 Download gff for BO07065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4650272..4650330 9..70 95 -> Plus
arm_3R 4650410..4650611 71..272 100 -> Plus
arm_3R 4650677..4651130 273..726 99 -> Plus
arm_3R 4651355..4651533 727..905 100   Plus

BO07065.complete Sequence

2152 bp assembled on 2008-08-14

GenBank Submission: FJ630645

> BO07065.complete
GAAGTTATCAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCA
CCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGG
GGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCT
GCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACA
ACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGG
TGCATCGAAATGCTTGACACGGATCATCCTAAGCGGCTGTGCAACAGCCT
ACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAG
AACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGAC
GAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGA
TGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGG
TTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATG
ATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTT
CCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCA
ACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATA
CTCGCTGATGAGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCAATC
GCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAAT
CCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTTGTG
TCGGATGAAGGATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGGCCT
TCTACTTGCCCTCTACGAGGCAGTGCACCTGAATCGGAACTTCATCACAA
CTCTGGCTCACACGCAGGCAGAGTCCAGTGCCCCGCCCTCGCCCAGTAAC
ACATTGAGTCTGGCCCAACCTGTGCCGGATCTATCTAATGCACCCATCAT
TGACATTACGCAGTATCCCACCAATCTGCTGGTGGCCGTATTTCAGTACT
GTTCCATCGTGATGCAGGACAATAAGAACGAATCGAGCATTGCTAATCTG
AAGCTGTGTTTCCTCATCCTCACCTGCATTTCCGAGGACCAGTACGCCAA
CTCCATGATGCACGACAGCAATCTTACCTTCAAAGTCATGCTGCATCGGG
CGCAGATGCGTCATCGCAAGCTGAATGTGGATCGGGTGGGCAAGTCCCAG
CCTTTGGCTGCCACTCTACTGGACCTCCTGGTGGAGTTCATTGTATCGCA
TTTGATGAAAAAGTTCCCGATGGAGCTGTATCTGCTCTGCATTGGAGTTA
TCCATCGAATCTTGTGCTATCAAAAGAGATGTAGAGTGCGGCTCAATTAT
CCGTGGAAGGAACTTTGGTCGGCTCTCATTGGTCTTCTGCGGTTCTTGGT
CAACCAAGAACAGACGCTGGTTAAAAAGTGCAACATTTTTCATCTGTCGC
TACAGGTGGTGAATATATTTAATCTGTTTATTACGTACGGTGATACTTTC
CTGGCCACAACAAATAGCTATGATGAGCTCTACTACGAACTGAACCGCGA
GGAGAAGGTATTTACGGAAATACATGCCATGGTTCTTCGCTATACAACGA
TGCCGGACTGCGAATACAAAGACGATGTAATCAAGCTCTTAAACGCTTTG
GTAAATATCCTGGCCATTGTTAAGCACTTTCAGAACAAGATCAAGGAATG
GCTGGCCGAACAAGGCCTCTCTACGCCCACGGAGGAGCAGATACTCGACG
TGGTGCGCAAGAACTACGACCTAACGCTCAAACTGCAGGACTCCCTGGAC
CAATACGAACGTTACACAGAAACGCCGCTGCACACCAACTTCTTTAAGTT
GATGGTTCGCGATGTTGTCAACGATACGCGCAAGCACATCTACGGCTATG
TGAAGGAGGCAGTATCTGTTATTCCGGACCAGGAAATTCTCCTCAGTTCC
TCTATGACATCCGTTTCGGCCGGTACAGCCACTCCGGCTTCAGCAACAGC
AGTGCCAGAAGCAAAAGCGTTGCCTTCTTTTGCTGCAAGCTTTCTAGACC
AT

BO07065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-RA 2121 CG8379-PA 1..2118 17..2134 10590 100 Plus
CG8379-RB 2124 CG8379-PB 1..2121 17..2134 10525 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-RA 2447 CG8379-RA 144..2262 16..2134 10595 100 Plus
CG8379-RB 2450 CG8379-RB 144..2265 16..2134 10530 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8825632..8826588 726..1682 4785 100 Plus
3R 32079331 3R 8824954..8825408 272..726 2275 100 Plus
3R 32079331 3R 8826642..8827094 1682..2134 2265 100 Plus
3R 32079331 3R 8824686..8824889 69..272 1020 100 Plus
3R 32079331 3R 8824554..8824610 16..72 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:33:33 has no hits.

BO07065.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:11 Download gff for BO07065.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 141..2269 9..2143 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:01 Download gff for BO07065.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 145..2262 17..2136 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:26 Download gff for BO07065.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 146..2263 17..2136 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:59 Download gff for BO07065.complete
Subject Subject Range Query Range Percent Splice Strand
CG8379-RA 145..2262 17..2136 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:59 Download gff for BO07065.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8824555..8824608 17..70 100 -> Plus
3R 8824688..8824889 71..272 100 -> Plus
3R 8824955..8825408 273..726 100 -> Plus
3R 8825633..8826588 727..1682 100 -> Plus
3R 8826643..8827094 1683..2136 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:01 Download gff for BO07065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4650277..4650330 17..70 100 -> Plus
arm_3R 4650410..4650611 71..272 100 -> Plus
arm_3R 4650677..4651130 273..726 100 -> Plus
arm_3R 4651355..4652310 727..1682 100 -> Plus
arm_3R 4652365..4652816 1683..2136 99   Plus

BO07065.pep Sequence

Translation from 16 to 2152

> BO07065.pep
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTDHPKRLCNSLHTLCS
LFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPENA
RFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQHG
HDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDFC
RQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLALY
EAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQY
PTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMHD
SNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKKF
PMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQT
LVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVFT
EIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQG
LSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRDV
VNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEAK
ALPSFAASFLDH

BO07065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8379-PA 706 CG8379-PA 1..706 1..706 3655 100 Plus
CG8379-PB 707 CG8379-PB 1..707 1..706 3643 99.9 Plus