Clone Sequence Records
BO07065.3prime Sequence
918 bp (834 high quality bases) assembled on 2005-12-03
> BO07065.3prime
ATGGTCTAGAAAGCTTGCAGCAAAAGAAGGCAACGCTTTTGCTTCTGGCA
CTGCTGTTGCTGAAGCCGGAGTGGCTGTACCGGCCGAAACGGATGTCATA
GAGGAACTGAGGAGAATTTCCTGGTCCGGAATAACAGATACTGCCTCCTT
CACATAGCCGTAGATGTGCTTGCGCGTATCGTTGACAACATCGCGAACCA
TCAACTTAAAGAAGTTGGTGTGCAGCGGCGTTTCTGTGTAACGTTCGTAT
TGGTCCAGGGAGTCCTGCAGTTTGAGCGTTAGGTCGTAGTTCTTGCGCAC
CACGTCGAGTATCTGCTCCTCCGTGGGCGTAGAGAGGCCTTGTTCGGCCA
GCCATTCCTTGATCTTGTTCTGAAAGTGCTTAACAATGGCCAGGATATTT
ACCAAAGCGTTTAAGAGCTTGATTACATCGTCTTTGTATTCGCAGTCCGG
CATCGTTGTATAGCGAAGAACCATGGCATGTATTTCCGTAAATACCTTCT
CCTCGCGGTTCAGTTCGTAGTAGAGCTCATCATAGCTATTTGTTGTGGCC
AGGAAAGTATCACCGTACGTAATAAACAGATTAAATATATTCACCACCTG
TAGCGACAGATGAAAAATGTTGCACTTTTTAACCAGCGTCTGTTCTTGGT
TGACCAAGAACCGCAGAAGACCAATGAGAGCCGACCAAAGTTCCTTCCAC
GGATAATTGAGCCGCACTCTACATCTCTTTTGATAGCACAAGATTCGATG
GATAACTCCAATGCAGAGCAGATACAGCTCCATCGGGAACTTTTTCATCA
AATGCGATACAATGAACTCCACCAGGAGGTCCAGTAGAGTGGCAGCCAAA
GGCTGGGACTTGCCCACCCGATCCACATTCAGCTTGCGATGACGCATCTG
CGCCCGATGCAGCATGAC
BO07065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8379-PA | 2121 | CG8379-RA | 1219..2118 | 918..19 | 4500 | 100 | Minus |
CG8379-PB | 2124 | CG8379-RB | 1222..2121 | 918..19 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8379-RB | 2450 | CG8379-RB | 1366..2265 | 918..19 | 4500 | 100 | Minus |
CG8379-RA | 2447 | CG8379-RA | 1363..2262 | 918..19 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8826642..8827094 | 471..19 | 2265 | 100 | Minus |
3R | 32079331 | 3R | 8826141..8826588 | 918..471 | 2240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:46:25 has no hits.
BO07065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:12 Download gff for
BO07065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-PB | 1222..2124 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:52 Download gff for
BO07065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-PB | 1222..2124 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:17 Download gff for
BO07065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 1363..2268 | 10..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:01 Download gff for
BO07065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 1363..2268 | 10..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:01 Download gff for
BO07065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8826141..8826588 | 471..918 | 100 | -> | Minus |
3R | 8826643..8827100 | 10..470 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:17 Download gff for
BO07065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4651863..4652310 | 471..918 | 100 | -> | Minus |
arm_3R | 4652365..4652822 | 10..470 | 99 | | Minus |
BO07065.5prime Sequence
905 bp (717 high quality bases) assembled on 2005-12-03
> BO07065.5prime
GAAGTTATCAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCA
CCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGG
GGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCT
GCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACA
ACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGG
TGCATCGAAATGCTTGACACGGATCATCCTAAGCGGCTGTGCAACAGCCT
ACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAG
AACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGAC
GAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGA
TGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGG
TTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATG
ATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTT
CCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCA
ACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATA
CTCGCTGATGAGCTGGCTTTNAATGGCTATGGCCAAATGATATCGCAATC
GCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAAT
CCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTTGTG
TCGGATGAAGGATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGGCCT
TCTAC
BO07065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8379-PA | 2121 | CG8379-RA | 1..889 | 17..905 | 4426 | 99.8 | Plus |
CG8379-PB | 2124 | CG8379-RB | 259..892 | 272..905 | 3151 | 99.8 | Plus |
CG8379-PB | 2124 | CG8379-RB | 1..257 | 17..273 | 1285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8379-RA | 2447 | CG8379-RA | 144..1033 | 16..905 | 4439 | 99.9 | Plus |
CG8379-RB | 2450 | CG8379-RB | 144..1036 | 16..905 | 4399 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8824954..8825408 | 272..726 | 2264 | 99.8 | Plus |
3R | 32079331 | 3R | 8824686..8824889 | 69..272 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 8825632..8825811 | 726..905 | 900 | 100 | Plus |
3R | 32079331 | 3R | 8824554..8824610 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:08:03 has no hits.
BO07065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:13 Download gff for
BO07065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:54 Download gff for
BO07065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:47 Download gff for
BO07065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 140..1033 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:04 Download gff for
BO07065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 140..1033 | 9..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:04 Download gff for
BO07065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8824550..8824608 | 9..70 | 95 | -> | Plus |
3R | 8824688..8824889 | 71..272 | 100 | -> | Plus |
3R | 8824955..8825408 | 273..726 | 99 | -> | Plus |
3R | 8825633..8825811 | 727..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:47 Download gff for
BO07065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4650272..4650330 | 9..70 | 95 | -> | Plus |
arm_3R | 4650410..4650611 | 71..272 | 100 | -> | Plus |
arm_3R | 4650677..4651130 | 273..726 | 99 | -> | Plus |
arm_3R | 4651355..4651533 | 727..905 | 100 | | Plus |
BO07065.complete Sequence
2152 bp assembled on 2008-08-14
GenBank Submission: FJ630645
> BO07065.complete
GAAGTTATCAGTCGACATGACCTCTCGCAAGCGCAGTGGCAGCGGCTCCA
CCAAGCGGCCCAAGGAGAAGGTGGTCTATATATATGAGCTGTTGTGCCGG
GGCGAGGATCCCAGCAGCGAGAGTCCCGAATTTTGGAACGAGTTCTTCCT
GCTGCAGCCGAACTTCGAGGCGCTGGAGAATGAGATTGGCAAACTCAACA
ACGAGCAGCTGCAGCTGGTGAAACCGAACCTGAACACCCTCTTCCAGAGG
TGCATCGAAATGCTTGACACGGATCATCCTAAGCGGCTGTGCAACAGCCT
ACACACGCTGTGCTCCCTGTTCTACGGGATCTTTAAGAAGTCCAACGCAG
AACCAACATTAAACATCCTAAACGAGATCTTCGGCCATGAGAAGATGGAC
GAATGGCTGAAGCTACTCATGCAGTACTGCAATCGCATCCTCCTGGGCGA
TGTGCCCGAAAACGCTCGATTTATGTGCCTCAAACTGCTGCAGGTTCTGG
TTACGGGCACGGATAACGTCAACCAGAACGCCCTCTTCGAGCATCTAATG
ATGCACAGCATGTTCGACGCCTTTGTTCGGCTACTCAGTGATCCTACGTT
CCGTAGCCAGCATGGACACGACATCGTTATCCTACTTACTATCCTGGTCA
ACTATCGCAAGCATGAAGCCACTAACCCCTATGTGGTGCAGCTCTCCATA
CTCGCTGATGAGCTGGCTTTAAATGGCTATGGCCAAATGATATCGCAATC
GCTAATTGATTTCTGTCGCCAGTACATTCAGAGCCTTAACAATGTGCAAT
CCTCTTCCTGGTTTTCGTCGCTGTCGAATATTGTGGGCAACATGTTTGTG
TCGGATGAAGGATGCGAACGGGTGCAGCAGATCAAGGCGAATAATGGCCT
TCTACTTGCCCTCTACGAGGCAGTGCACCTGAATCGGAACTTCATCACAA
CTCTGGCTCACACGCAGGCAGAGTCCAGTGCCCCGCCCTCGCCCAGTAAC
ACATTGAGTCTGGCCCAACCTGTGCCGGATCTATCTAATGCACCCATCAT
TGACATTACGCAGTATCCCACCAATCTGCTGGTGGCCGTATTTCAGTACT
GTTCCATCGTGATGCAGGACAATAAGAACGAATCGAGCATTGCTAATCTG
AAGCTGTGTTTCCTCATCCTCACCTGCATTTCCGAGGACCAGTACGCCAA
CTCCATGATGCACGACAGCAATCTTACCTTCAAAGTCATGCTGCATCGGG
CGCAGATGCGTCATCGCAAGCTGAATGTGGATCGGGTGGGCAAGTCCCAG
CCTTTGGCTGCCACTCTACTGGACCTCCTGGTGGAGTTCATTGTATCGCA
TTTGATGAAAAAGTTCCCGATGGAGCTGTATCTGCTCTGCATTGGAGTTA
TCCATCGAATCTTGTGCTATCAAAAGAGATGTAGAGTGCGGCTCAATTAT
CCGTGGAAGGAACTTTGGTCGGCTCTCATTGGTCTTCTGCGGTTCTTGGT
CAACCAAGAACAGACGCTGGTTAAAAAGTGCAACATTTTTCATCTGTCGC
TACAGGTGGTGAATATATTTAATCTGTTTATTACGTACGGTGATACTTTC
CTGGCCACAACAAATAGCTATGATGAGCTCTACTACGAACTGAACCGCGA
GGAGAAGGTATTTACGGAAATACATGCCATGGTTCTTCGCTATACAACGA
TGCCGGACTGCGAATACAAAGACGATGTAATCAAGCTCTTAAACGCTTTG
GTAAATATCCTGGCCATTGTTAAGCACTTTCAGAACAAGATCAAGGAATG
GCTGGCCGAACAAGGCCTCTCTACGCCCACGGAGGAGCAGATACTCGACG
TGGTGCGCAAGAACTACGACCTAACGCTCAAACTGCAGGACTCCCTGGAC
CAATACGAACGTTACACAGAAACGCCGCTGCACACCAACTTCTTTAAGTT
GATGGTTCGCGATGTTGTCAACGATACGCGCAAGCACATCTACGGCTATG
TGAAGGAGGCAGTATCTGTTATTCCGGACCAGGAAATTCTCCTCAGTTCC
TCTATGACATCCGTTTCGGCCGGTACAGCCACTCCGGCTTCAGCAACAGC
AGTGCCAGAAGCAAAAGCGTTGCCTTCTTTTGCTGCAAGCTTTCTAGACC
AT
BO07065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8379-RA | 2121 | CG8379-PA | 1..2118 | 17..2134 | 10590 | 100 | Plus |
CG8379-RB | 2124 | CG8379-PB | 1..2121 | 17..2134 | 10525 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8379-RA | 2447 | CG8379-RA | 144..2262 | 16..2134 | 10595 | 100 | Plus |
CG8379-RB | 2450 | CG8379-RB | 144..2265 | 16..2134 | 10530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8825632..8826588 | 726..1682 | 4785 | 100 | Plus |
3R | 32079331 | 3R | 8824954..8825408 | 272..726 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 8826642..8827094 | 1682..2134 | 2265 | 100 | Plus |
3R | 32079331 | 3R | 8824686..8824889 | 69..272 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 8824554..8824610 | 16..72 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:33:33 has no hits.
BO07065.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:11 Download gff for
BO07065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 141..2269 | 9..2143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:01 Download gff for
BO07065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 145..2262 | 17..2136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:26 Download gff for
BO07065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 146..2263 | 17..2136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:59 Download gff for
BO07065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8379-RA | 145..2262 | 17..2136 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:59 Download gff for
BO07065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8824555..8824608 | 17..70 | 100 | -> | Plus |
3R | 8824688..8824889 | 71..272 | 100 | -> | Plus |
3R | 8824955..8825408 | 273..726 | 100 | -> | Plus |
3R | 8825633..8826588 | 727..1682 | 100 | -> | Plus |
3R | 8826643..8827094 | 1683..2136 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:01 Download gff for
BO07065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4650277..4650330 | 17..70 | 100 | -> | Plus |
arm_3R | 4650410..4650611 | 71..272 | 100 | -> | Plus |
arm_3R | 4650677..4651130 | 273..726 | 100 | -> | Plus |
arm_3R | 4651355..4652310 | 727..1682 | 100 | -> | Plus |
arm_3R | 4652365..4652816 | 1683..2136 | 99 | | Plus |
BO07065.pep Sequence
Translation from 16 to 2152
> BO07065.pep
MTSRKRSGSGSTKRPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNF
EALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTDHPKRLCNSLHTLCS
LFYGIFKKSNAEPTLNILNEIFGHEKMDEWLKLLMQYCNRILLGDVPENA
RFMCLKLLQVLVTGTDNVNQNALFEHLMMHSMFDAFVRLLSDPTFRSQHG
HDIVILLTILVNYRKHEATNPYVVQLSILADELALNGYGQMISQSLIDFC
RQYIQSLNNVQSSSWFSSLSNIVGNMFVSDEGCERVQQIKANNGLLLALY
EAVHLNRNFITTLAHTQAESSAPPSPSNTLSLAQPVPDLSNAPIIDITQY
PTNLLVAVFQYCSIVMQDNKNESSIANLKLCFLILTCISEDQYANSMMHD
SNLTFKVMLHRAQMRHRKLNVDRVGKSQPLAATLLDLLVEFIVSHLMKKF
PMELYLLCIGVIHRILCYQKRCRVRLNYPWKELWSALIGLLRFLVNQEQT
LVKKCNIFHLSLQVVNIFNLFITYGDTFLATTNSYDELYYELNREEKVFT
EIHAMVLRYTTMPDCEYKDDVIKLLNALVNILAIVKHFQNKIKEWLAEQG
LSTPTEEQILDVVRKNYDLTLKLQDSLDQYERYTETPLHTNFFKLMVRDV
VNDTRKHIYGYVKEAVSVIPDQEILLSSSMTSVSAGTATPASATAVPEAK
ALPSFAASFLDH
BO07065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8379-PA | 706 | CG8379-PA | 1..706 | 1..706 | 3655 | 100 | Plus |
CG8379-PB | 707 | CG8379-PB | 1..707 | 1..706 | 3643 | 99.9 | Plus |