Clone Sequence Records
BO07066.3prime Sequence
815 bp (814 high quality bases) assembled on 2005-12-03
> BO07066.3prime
ATGGTCTAGAAAGCTTGCGTCTGTACCGAAGTATTTCTGGCCAAAGTGAT
TAGGTGCCACGGGATGCAGCTCGGAGGTGAGGATCTTCAGCTTGGGGAAG
GCATTCACTACGGTCCGAGCGGCAATGGGTGTGCAGAAGAGATTGGACAG
GATGATGCAGCTCTCGGGTACGCCGTGTTCCCGCAGCACATTCACCGCCT
GCAGCACAGTGTTGCCCGTGGACATGATGGGGTACATGAGTAGCACCTGC
CTGCTGCCGATGTCATCGGGAAAGCGGGCATAAACCACGCGGGCCTCATG
CGTATTGGCATCGGACTCGACCAGGATCTTTCCAATGCGAATGGAGCGAC
AGCAGTCACGCAGTCCCTGCTCCATGGCCTCTCCCGATCGGATGATGGAC
ACGCCGCAGTTGCCGGAGCGATACTTCAGTCCCTCGTAAATCGCACCGGT
GGGCGTCTCCACATCGCAATGGGTGTAGGGCAGTTGGTTGAGCGACTCCT
CGATGACCAGCCGGATGAGACGGTCGGCATAGAACTTGAAGTCACTGCGC
GTGGTGTTCTTGTCGCGCAATATGGTCAGCAGTTCGGCCACCTGGGAATT
GCACTCGAGTAGCTTCAGGTTGCTGCCGTACTCCGCCAGGATCTCCTCCG
ATGTGGCAGCTGGCACCGCGGCATGTGCATGCGTGGGAGTGTGCAGCTGT
TGCTCCTGCTCCTGGGCTTCCTGCTGCGGCTGCTGGTGATCTGAGGAACT
GCTGCCCTCCTCCGACTGGGAGCCGCTGCTGCTGGGCGAGCCGGTGCGCA
TGTCGACTGATAACT
BO07066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-PA | 786 | CG5537-RA | 1..783 | 801..19 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 1191 | CG5537-RC | 106..889 | 802..19 | 3920 | 100 | Minus |
CG5537-RA | 1106 | CG5537-RA | 106..889 | 802..19 | 3920 | 100 | Minus |
CG5537-RB | 1045 | CG5537-RB | 106..881 | 802..27 | 3880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5811386..5811926 | 559..19 | 2705 | 100 | Minus |
3L | 28110227 | 3L | 5811078..5811321 | 802..559 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:26:34 has no hits.
BO07066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:14 Download gff for
BO07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:55 Download gff for
BO07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:49 Download gff for
BO07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..889 | 19..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:22 Download gff for
BO07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..889 | 19..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:22 Download gff for
BO07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5811068..5811320 | 560..811 | 98 | -> | Minus |
3L | 5811386..5811926 | 19..559 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:49 Download gff for
BO07066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5804168..5804420 | 560..811 | 98 | -> | Minus |
arm_3L | 5804486..5805026 | 19..559 | 100 | | Minus |
BO07066.5prime Sequence
815 bp (756 high quality bases) assembled on 2005-12-03
> BO07066.5prime
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACG
CAAGCTTTCTAGACC
BO07066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-PA | 786 | CG5537-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 1191 | CG5537-RC | 106..889 | 16..799 | 3920 | 100 | Plus |
CG5537-RA | 1106 | CG5537-RA | 106..889 | 16..799 | 3920 | 100 | Plus |
CG5537-RB | 1045 | CG5537-RB | 106..881 | 16..791 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5811386..5811926 | 259..799 | 2705 | 100 | Plus |
3L | 28110227 | 3L | 5811078..5811321 | 16..259 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:35:19 has no hits.
BO07066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:15 Download gff for
BO07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:56 Download gff for
BO07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-PA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:50 Download gff for
BO07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..889 | 7..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:22 Download gff for
BO07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..889 | 7..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:22 Download gff for
BO07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5811068..5811320 | 7..258 | 98 | -> | Plus |
3L | 5811386..5811926 | 259..799 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:50 Download gff for
BO07066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5804168..5804420 | 7..258 | 98 | -> | Plus |
arm_3L | 5804486..5805026 | 259..799 | 100 | | Plus |
BO07066.complete Sequence
817 bp (817 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630646
> BO07066.complete
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACG
CAAGCTTTCTAGACCAT
BO07066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 786 | CG5537-PC | 1..783 | 17..799 | 3915 | 100 | Plus |
CG5537-RA | 786 | CG5537-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
CG5537-RB | 786 | CG5537-PB | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-RC | 1191 | CG5537-RC | 106..889 | 16..799 | 3920 | 100 | Plus |
CG5537-RA | 1106 | CG5537-RA | 106..889 | 16..799 | 3920 | 100 | Plus |
CG5537-RB | 1045 | CG5537-RB | 106..881 | 16..791 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5811386..5811926 | 259..799 | 2705 | 100 | Plus |
3L | 28110227 | 3L | 5811078..5811321 | 16..259 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:59:35 has no hits.
BO07066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:31 Download gff for
BO07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:05 Download gff for
BO07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..889 | 7..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:42 Download gff for
BO07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 107..889 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:31 Download gff for
BO07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 96..889 | 7..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:10 Download gff for
BO07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5537-RA | 107..889 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:10 Download gff for
BO07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5811079..5811320 | 17..258 | 100 | -> | Plus |
3L | 5811386..5811926 | 259..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:42 Download gff for
BO07066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5804179..5804420 | 17..258 | 100 | -> | Plus |
arm_3L | 5804486..5805026 | 259..801 | 99 | | Plus |
BO07066.pep Sequence
Translation from 16 to 817
> BO07066.pep
MRTGSPSSSGSQSEEGSSSSDHQQPQQEAQEQEQQLHTPTHAHAAVPAAT
SEEILAEYGSNLKLLECNSQVAELLTILRDKNTTRSDFKFYADRLIRLVI
EESLNQLPYTHCDVETPTGAIYEGLKYRSGNCGVSIIRSGEAMEQGLRDC
CRSIRIGKILVESDANTHEARVVYARFPDDIGSRQVLLMYPIMSTGNTVL
QAVNVLREHGVPESCIILSNLFCTPIAARTVVNAFPKLKILTSELHPVAP
NHFGQKYFGTDASFLDH
BO07066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5537-PC | 261 | CG5537-PC | 1..261 | 1..261 | 1346 | 100 | Plus |
CG5537-PA | 261 | CG5537-PA | 1..261 | 1..261 | 1346 | 100 | Plus |
CG5537-PB | 261 | CG5537-PB | 1..258 | 1..258 | 1329 | 100 | Plus |
l(2)k01209-PA | 561 | CG4798-PA | 346..558 | 61..263 | 436 | 44.6 | Plus |
l(2)k01209-PD | 626 | CG4798-PD | 411..623 | 61..263 | 436 | 44.6 | Plus |