Clone BO07066 Report

Search the DGRC for BO07066

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG5537-RA
Protein status:BO07066.pep: validated full length
Sequenced Size:817

Clone Sequence Records

BO07066.3prime Sequence

815 bp (814 high quality bases) assembled on 2005-12-03

> BO07066.3prime
ATGGTCTAGAAAGCTTGCGTCTGTACCGAAGTATTTCTGGCCAAAGTGAT
TAGGTGCCACGGGATGCAGCTCGGAGGTGAGGATCTTCAGCTTGGGGAAG
GCATTCACTACGGTCCGAGCGGCAATGGGTGTGCAGAAGAGATTGGACAG
GATGATGCAGCTCTCGGGTACGCCGTGTTCCCGCAGCACATTCACCGCCT
GCAGCACAGTGTTGCCCGTGGACATGATGGGGTACATGAGTAGCACCTGC
CTGCTGCCGATGTCATCGGGAAAGCGGGCATAAACCACGCGGGCCTCATG
CGTATTGGCATCGGACTCGACCAGGATCTTTCCAATGCGAATGGAGCGAC
AGCAGTCACGCAGTCCCTGCTCCATGGCCTCTCCCGATCGGATGATGGAC
ACGCCGCAGTTGCCGGAGCGATACTTCAGTCCCTCGTAAATCGCACCGGT
GGGCGTCTCCACATCGCAATGGGTGTAGGGCAGTTGGTTGAGCGACTCCT
CGATGACCAGCCGGATGAGACGGTCGGCATAGAACTTGAAGTCACTGCGC
GTGGTGTTCTTGTCGCGCAATATGGTCAGCAGTTCGGCCACCTGGGAATT
GCACTCGAGTAGCTTCAGGTTGCTGCCGTACTCCGCCAGGATCTCCTCCG
ATGTGGCAGCTGGCACCGCGGCATGTGCATGCGTGGGAGTGTGCAGCTGT
TGCTCCTGCTCCTGGGCTTCCTGCTGCGGCTGCTGGTGATCTGAGGAACT
GCTGCCCTCCTCCGACTGGGAGCCGCTGCTGCTGGGCGAGCCGGTGCGCA
TGTCGACTGATAACT

BO07066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-PA 786 CG5537-RA 1..783 801..19 3915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 1191 CG5537-RC 106..889 802..19 3920 100 Minus
CG5537-RA 1106 CG5537-RA 106..889 802..19 3920 100 Minus
CG5537-RB 1045 CG5537-RB 106..881 802..27 3880 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5811386..5811926 559..19 2705 100 Minus
3L 28110227 3L 5811078..5811321 802..559 1220 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:26:34 has no hits.

BO07066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:14 Download gff for BO07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 18..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:55 Download gff for BO07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 18..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:49 Download gff for BO07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..889 19..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:22 Download gff for BO07066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..889 19..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:22 Download gff for BO07066.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5811068..5811320 560..811 98 -> Minus
3L 5811386..5811926 19..559 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:49 Download gff for BO07066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5804168..5804420 560..811 98 -> Minus
arm_3L 5804486..5805026 19..559 100   Minus

BO07066.5prime Sequence

815 bp (756 high quality bases) assembled on 2005-12-03

> BO07066.5prime
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACG
CAAGCTTTCTAGACC

BO07066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-PA 786 CG5537-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 1191 CG5537-RC 106..889 16..799 3920 100 Plus
CG5537-RA 1106 CG5537-RA 106..889 16..799 3920 100 Plus
CG5537-RB 1045 CG5537-RB 106..881 16..791 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5811386..5811926 259..799 2705 100 Plus
3L 28110227 3L 5811078..5811321 16..259 1220 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:35:19 has no hits.

BO07066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:15 Download gff for BO07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 17..800 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:56 Download gff for BO07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-PA 1..786 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:50 Download gff for BO07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..889 7..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:22 Download gff for BO07066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..889 7..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:22 Download gff for BO07066.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5811068..5811320 7..258 98 -> Plus
3L 5811386..5811926 259..799 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:50 Download gff for BO07066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5804168..5804420 7..258 98 -> Plus
arm_3L 5804486..5805026 259..799 100   Plus

BO07066.complete Sequence

817 bp (817 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630646

> BO07066.complete
GAAGTTATCAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCC
AGTCGGAGGAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAA
GCCCAGGAGCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGC
GGTGCCAGCTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACC
TGAAGCTACTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTG
CGCGACAAGAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCT
CATCCGGCTGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATT
GCGATGTGGAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGC
TCCGGCAACTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCA
GGGACTGCGTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCG
AGTCCGATGCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCC
GATGACATCGGCAGCAGGCAGGTGCTACTCATGTACCCCATCATGTCCAC
GGGCAACACTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTAC
CCGAGAGCTGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCT
CGGACCGTAGTGAATGCCTTCCCCAAGCTGAAGATCCTCACCTCCGAGCT
GCATCCCGTGGCACCTAATCACTTTGGCCAGAAATACTTCGGTACAGACG
CAAGCTTTCTAGACCAT

BO07066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 786 CG5537-PC 1..783 17..799 3915 100 Plus
CG5537-RA 786 CG5537-PA 1..783 17..799 3915 100 Plus
CG5537-RB 786 CG5537-PB 1..775 17..791 3875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-RC 1191 CG5537-RC 106..889 16..799 3920 100 Plus
CG5537-RA 1106 CG5537-RA 106..889 16..799 3920 100 Plus
CG5537-RB 1045 CG5537-RB 106..881 16..791 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5811386..5811926 259..799 2705 100 Plus
3L 28110227 3L 5811078..5811321 16..259 1220 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:59:35 has no hits.

BO07066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:31 Download gff for BO07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 1..786 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:05 Download gff for BO07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..889 7..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:42 Download gff for BO07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 107..889 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:31 Download gff for BO07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 96..889 7..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:10 Download gff for BO07066.complete
Subject Subject Range Query Range Percent Splice Strand
CG5537-RA 107..889 17..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:10 Download gff for BO07066.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5811079..5811320 17..258 100 -> Plus
3L 5811386..5811926 259..801 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:42 Download gff for BO07066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5804179..5804420 17..258 100 -> Plus
arm_3L 5804486..5805026 259..801 99   Plus

BO07066.pep Sequence

Translation from 16 to 817

> BO07066.pep
MRTGSPSSSGSQSEEGSSSSDHQQPQQEAQEQEQQLHTPTHAHAAVPAAT
SEEILAEYGSNLKLLECNSQVAELLTILRDKNTTRSDFKFYADRLIRLVI
EESLNQLPYTHCDVETPTGAIYEGLKYRSGNCGVSIIRSGEAMEQGLRDC
CRSIRIGKILVESDANTHEARVVYARFPDDIGSRQVLLMYPIMSTGNTVL
QAVNVLREHGVPESCIILSNLFCTPIAARTVVNAFPKLKILTSELHPVAP
NHFGQKYFGTDASFLDH

BO07066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5537-PC 261 CG5537-PC 1..261 1..261 1346 100 Plus
CG5537-PA 261 CG5537-PA 1..261 1..261 1346 100 Plus
CG5537-PB 261 CG5537-PB 1..258 1..258 1329 100 Plus
l(2)k01209-PA 561 CG4798-PA 346..558 61..263 436 44.6 Plus
l(2)k01209-PD 626 CG4798-PD 411..623 61..263 436 44.6 Plus