Clone Sequence Records
BO07068.3prime Sequence
807 bp (806 high quality bases) assembled on 2005-12-03
> BO07068.3prime
ATGGTCTAGAAAGCTTGCAAATTGCGGTATAGTCGAGACGCGGTTATAGA
GCGTCTGCCTTTTGGCCACGCGGAAGGGACAACGTGTCATCATCTTAAAG
ACGACGAAACCACAGACGACGAATAGTCCCCAAAAAACATAGGTGAAGAG
CAGGATAAATCGATTTGGCTGCCACAGCACCGTGTAGCTCAGATTGTAGT
TTTCCAAAACCGCGTAGCCCAATCCGATCTTGGACTTTCCCATGCGATAC
GAGCAAGTGGGCACCATTATCTCCAGATAGCTGTGCTCCTGCTCTTTGAG
GGCCTTCAAGTCAAAATGCCTCACGGAGTTTTCATAAAAGTTGATCACCT
TGGTGGAGGGGTAAATAAATATTCTGGATTCATGCCAGTGTCCTGAGAAA
ATGATATGTGGATCCAAGTCGCTGATGATGGCTCTCAACAGGGGTCCTCC
GCCAATGAGCAGCGGGGCATGGGATACGCCAATTCTTAGACGATCCGCAT
TGTTATCCCTATCCGGGTTGCTAAAGTCCAATAGCATGCGGTTTATCTTG
AAGAAGCGTAATCGATTGTCATAGTCAAAGAGGTCTTCACTCATGAATTC
GTTCTCAAAGCGTCTTTGGTTCGAGTTGGATATGTAGTCGCCATTCTCGC
CGCCAATATCATTGTCACCCGGCACATGGACGCGTTTTTTGTAGTTCTTA
TTCTGATAAATTCGTCTGAACCGCTGAACGTACTGCTTGTACTCTTGAGC
CGTGGCAATGTTGCCTTCGTCCAACAGATCGCCCAGGAACACTATGATGT
GAGGCTG
BO07068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8889-PA | 1068 | CG8889-RA | 277..1065 | 807..19 | 3945 | 100 | Minus |
CG8889-PB | 1074 | CG8889-RB | 283..1071 | 807..19 | 3945 | 100 | Minus |
CG8889-PC | 579 | CG8889-RC | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mppe-RB | 1763 | CG8889-RB | 742..1530 | 807..19 | 3945 | 100 | Minus |
Mppe-RA | 1757 | CG8889-RA | 736..1524 | 807..19 | 3945 | 100 | Minus |
Mppe-RE | 1790 | CG8889-RE | 892..1557 | 684..19 | 3330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12026092..12026572 | 204..684 | 2405 | 100 | Plus |
2R | 25286936 | 2R | 12025847..12026032 | 19..204 | 930 | 100 | Plus |
2R | 25286936 | 2R | 12026723..12026845 | 685..807 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:55:33 has no hits.
BO07068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:18 Download gff for
BO07068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8889-PB | 283..1074 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:01 Download gff for
BO07068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8889-PB | 283..1074 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:47 Download gff for
BO07068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mppe-RA | 736..1524 | 19..807 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:51 Download gff for
BO07068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mppe-RA | 736..1524 | 19..807 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:51 Download gff for
BO07068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12025847..12026031 | 19..203 | 100 | <- | Plus |
2R | 12026092..12026572 | 204..684 | 100 | <- | Plus |
2R | 12026723..12026845 | 685..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:47 Download gff for
BO07068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7913352..7913536 | 19..203 | 100 | <- | Plus |
arm_2R | 7913597..7914077 | 204..684 | 100 | <- | Plus |
arm_2R | 7914228..7914350 | 685..807 | 100 | | Plus |
BO07068.5prime Sequence
867 bp (793 high quality bases) assembled on 2005-12-03
> BO07068.5prime
GAAGTTATCAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGT
GCCGCGGTTTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTT
ATAGTTTACTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACT
AGATAATTGCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAA
ACTCCTACGATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGAT
AGATACCTGGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCA
CATCATAGTGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGG
CTCAAGAGTACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAAT
AAGAACTACAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGG
CGAGAATGGCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACG
AATTCATGAGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTC
AAGATAAACCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAA
TGCGGATCGTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCG
GAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATT
TTCTCAGGACACTGGCATGAATCCAGAATATTTATTTACCCCTCCACCAA
GGTGATCAACTTTTATGAAAACTCCGTGAGGCATTTTGACTTGAAGGCCC
TCAAAGAGCAGGAGCACAGCTATCTGGAGATAATGGTGCCCACTTGCTCG
TATCGCATGGGGAAGTC
BO07068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8889-PA | 1068 | CG8889-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
CG8889-PB | 1074 | CG8889-RB | 31..857 | 41..867 | 4110 | 99.8 | Plus |
CG8889-PC | 579 | CG8889-RC | 1..362 | 506..867 | 1785 | 99.7 | Plus |
CG8889-PB | 1074 | CG8889-RB | 1..27 | 17..43 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mppe-RA | 1757 | CG8889-RA | 460..1310 | 17..867 | 4240 | 99.9 | Plus |
Mppe-RB | 1763 | CG8889-RB | 460..1316 | 17..867 | 4170 | 99.2 | Plus |
Mppe-RE | 1790 | CG8889-RE | 892..1343 | 416..867 | 2245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12026121..12026572 | 867..416 | 2245 | 99.8 | Minus |
2R | 25286936 | 2R | 12026723..12026988 | 415..150 | 1330 | 100 | Minus |
2R | 25286936 | 2R | 12027038..12027153 | 156..41 | 565 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:58:03 has no hits.
BO07068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:19 Download gff for
BO07068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8889-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:03 Download gff for
BO07068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8889-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:40 Download gff for
BO07068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mppe-RA | 460..1310 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:25 Download gff for
BO07068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mppe-RA | 460..1310 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:25 Download gff for
BO07068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12026121..12026572 | 416..867 | 99 | <- | Minus |
2R | 12026723..12026985 | 153..415 | 100 | <- | Minus |
2R | 12027042..12027151 | 43..152 | 100 | <- | Minus |
2R | 12027223..12027248 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:40 Download gff for
BO07068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7913626..7914077 | 416..867 | 99 | <- | Minus |
arm_2R | 7914228..7914490 | 153..415 | 100 | <- | Minus |
arm_2R | 7914547..7914656 | 43..152 | 100 | <- | Minus |
arm_2R | 7914728..7914753 | 17..42 | 100 | | Minus |
BO07068.complete Sequence
1099 bp (1099 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630647
> BO07068.complete
GAAGTTATCAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGT
GCCGCGGTTTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTT
ATAGTTTACTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACT
AGATAATTGCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAA
ACTCCTACGATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGAT
AGATACCTGGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCA
CATCATAGTGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGG
CTCAAGAGTACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAAT
AAGAACTACAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGG
CGAGAATGGCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACG
AATTCATGAGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTC
AAGATAAACCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAA
TGCGGATCGTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCG
GAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATT
TTCTCAGGACACTGGCATGAATCCAGAATATTTATTTACCCCTCCACCAA
GGTGATCAACTTTTATGAAAACTCCGTGAGGCATTTTGACTTGAAGGCCC
TCAAAGAGCAGGAGCACAGCTATCTGGAGATAATGGTGCCCACTTGCTCG
TATCGCATGGGAAAGTCCAAGATCGGATTGGGCTACGCGGTTTTGGAAAA
CTACAATCTGAGCTACACGGTGCTGTGGCAGCCAAATCGATTTATCCTGC
TCTTCACCTATGTTTTTTGGGGACTATTCGTCGTCTGTGGTTTCGTCGTC
TTTAAGATGATGACACGTTGTCCCTTCCGCGTGGCCAAAAGGCAGACGCT
CTATAACCGCGTCTCGACTATACCGCAATTTGCAAGCTTTCTAGACCAT
BO07068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mppe-RA | 1068 | CG8889-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Mppe-RB | 1074 | CG8889-PB | 1..1071 | 17..1081 | 5230 | 99.4 | Plus |
Mppe-RE | 1101 | CG8889-PE | 433..1098 | 416..1081 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mppe-RA | 1757 | CG8889-RA | 460..1524 | 17..1081 | 5325 | 100 | Plus |
Mppe-RB | 1763 | CG8889-RB | 460..1530 | 17..1081 | 5230 | 99.4 | Plus |
Mppe-RE | 1790 | CG8889-RE | 892..1557 | 416..1081 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12026092..12026572 | 896..416 | 2405 | 100 | Minus |
2R | 25286936 | 2R | 12026723..12026988 | 415..150 | 1330 | 100 | Minus |
2R | 25286936 | 2R | 12025847..12026032 | 1081..896 | 930 | 100 | Minus |
2R | 25286936 | 2R | 12027038..12027153 | 156..41 | 565 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:47:16 has no hits.
BO07068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:34 Download gff for
BO07068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8889-RA | 1..1068 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:08 Download gff for
BO07068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8889-RA | 441..1505 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:59 Download gff for
BO07068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mppe-RA | 460..1524 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:40 Download gff for
BO07068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mppe-RA | 460..1524 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:40 Download gff for
BO07068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12025845..12026031 | 897..1083 | 98 | <- | Minus |
2R | 12026092..12026572 | 416..896 | 100 | <- | Minus |
2R | 12026723..12026985 | 153..415 | 100 | <- | Minus |
2R | 12027042..12027151 | 43..152 | 100 | <- | Minus |
2R | 12027223..12027248 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:59 Download gff for
BO07068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7913350..7913536 | 897..1083 | 98 | <- | Minus |
arm_2R | 7913597..7914077 | 416..896 | 100 | <- | Minus |
arm_2R | 7914228..7914490 | 153..415 | 100 | <- | Minus |
arm_2R | 7914547..7914656 | 43..152 | 100 | <- | Minus |
arm_2R | 7914728..7914753 | 17..42 | 100 | | Minus |
BO07068.pep Sequence
Translation from 16 to 1099
> BO07068.pep
MASLRVVNRLVCRGFVALTLLLVFFNEFIVYYMAQSSWQPIDCKLDNCTR
LLLIADPQILGNSYDRSSHSPLARYDSDRYLAKTFERALAFTQPHIIVFL
GDLLDEGNIATAQEYKQYVQRFRRIYQNKNYKKRVHVPGDNDIGGENGDY
ISNSNQRRFENEFMSEDLFDYDNRLRFFKINRMLLDFSNPDRDNNADRLR
IGVSHAPLLIGGGPLLRAIISDLDPHIIFSGHWHESRIFIYPSTKVINFY
ENSVRHFDLKALKEQEHSYLEIMVPTCSYRMGKSKIGLGYAVLENYNLSY
TVLWQPNRFILLFTYVFWGLFVVCGFVVFKMMTRCPFRVAKRQTLYNRVS
TIPQFASFLDH
BO07068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mppe-PA | 355 | CG8889-PA | 1..355 | 1..355 | 1882 | 100 | Plus |
Mppe-PB | 357 | CG8889-PB | 1..357 | 1..355 | 1869 | 99.4 | Plus |
Mppe-PD | 364 | CG8889-PD | 1..364 | 1..355 | 1862 | 97.5 | Plus |
Mppe-PE | 366 | CG8889-PE | 1..366 | 1..355 | 1849 | 97 | Plus |