Clone BO07068 Report

Search the DGRC for BO07068

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG8889-RA
Protein status:BO07068.pep: validated full length
Sequenced Size:1099

Clone Sequence Records

BO07068.3prime Sequence

807 bp (806 high quality bases) assembled on 2005-12-03

> BO07068.3prime
ATGGTCTAGAAAGCTTGCAAATTGCGGTATAGTCGAGACGCGGTTATAGA
GCGTCTGCCTTTTGGCCACGCGGAAGGGACAACGTGTCATCATCTTAAAG
ACGACGAAACCACAGACGACGAATAGTCCCCAAAAAACATAGGTGAAGAG
CAGGATAAATCGATTTGGCTGCCACAGCACCGTGTAGCTCAGATTGTAGT
TTTCCAAAACCGCGTAGCCCAATCCGATCTTGGACTTTCCCATGCGATAC
GAGCAAGTGGGCACCATTATCTCCAGATAGCTGTGCTCCTGCTCTTTGAG
GGCCTTCAAGTCAAAATGCCTCACGGAGTTTTCATAAAAGTTGATCACCT
TGGTGGAGGGGTAAATAAATATTCTGGATTCATGCCAGTGTCCTGAGAAA
ATGATATGTGGATCCAAGTCGCTGATGATGGCTCTCAACAGGGGTCCTCC
GCCAATGAGCAGCGGGGCATGGGATACGCCAATTCTTAGACGATCCGCAT
TGTTATCCCTATCCGGGTTGCTAAAGTCCAATAGCATGCGGTTTATCTTG
AAGAAGCGTAATCGATTGTCATAGTCAAAGAGGTCTTCACTCATGAATTC
GTTCTCAAAGCGTCTTTGGTTCGAGTTGGATATGTAGTCGCCATTCTCGC
CGCCAATATCATTGTCACCCGGCACATGGACGCGTTTTTTGTAGTTCTTA
TTCTGATAAATTCGTCTGAACCGCTGAACGTACTGCTTGTACTCTTGAGC
CGTGGCAATGTTGCCTTCGTCCAACAGATCGCCCAGGAACACTATGATGT
GAGGCTG

BO07068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8889-PA 1068 CG8889-RA 277..1065 807..19 3945 100 Minus
CG8889-PB 1074 CG8889-RB 283..1071 807..19 3945 100 Minus
CG8889-PC 579 CG8889-RC 1..576 594..19 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mppe-RB 1763 CG8889-RB 742..1530 807..19 3945 100 Minus
Mppe-RA 1757 CG8889-RA 736..1524 807..19 3945 100 Minus
Mppe-RE 1790 CG8889-RE 892..1557 684..19 3330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12026092..12026572 204..684 2405 100 Plus
2R 25286936 2R 12025847..12026032 19..204 930 100 Plus
2R 25286936 2R 12026723..12026845 685..807 615 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:55:33 has no hits.

BO07068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:18 Download gff for BO07068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8889-PB 283..1074 18..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:01 Download gff for BO07068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8889-PB 283..1074 18..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:47 Download gff for BO07068.3prime
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 736..1524 19..807 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:51 Download gff for BO07068.3prime
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 736..1524 19..807 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:51 Download gff for BO07068.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12025847..12026031 19..203 100 <- Plus
2R 12026092..12026572 204..684 100 <- Plus
2R 12026723..12026845 685..807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:47 Download gff for BO07068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7913352..7913536 19..203 100 <- Plus
arm_2R 7913597..7914077 204..684 100 <- Plus
arm_2R 7914228..7914350 685..807 100   Plus

BO07068.5prime Sequence

867 bp (793 high quality bases) assembled on 2005-12-03

> BO07068.5prime
GAAGTTATCAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGT
GCCGCGGTTTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTT
ATAGTTTACTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACT
AGATAATTGCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAA
ACTCCTACGATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGAT
AGATACCTGGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCA
CATCATAGTGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGG
CTCAAGAGTACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAAT
AAGAACTACAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGG
CGAGAATGGCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACG
AATTCATGAGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTC
AAGATAAACCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAA
TGCGGATCGTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCG
GAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATT
TTCTCAGGACACTGGCATGAATCCAGAATATTTATTTACCCCTCCACCAA
GGTGATCAACTTTTATGAAAACTCCGTGAGGCATTTTGACTTGAAGGCCC
TCAAAGAGCAGGAGCACAGCTATCTGGAGATAATGGTGCCCACTTGCTCG
TATCGCATGGGGAAGTC

BO07068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8889-PA 1068 CG8889-RA 1..851 17..867 4230 99.8 Plus
CG8889-PB 1074 CG8889-RB 31..857 41..867 4110 99.8 Plus
CG8889-PC 579 CG8889-RC 1..362 506..867 1785 99.7 Plus
CG8889-PB 1074 CG8889-RB 1..27 17..43 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Mppe-RA 1757 CG8889-RA 460..1310 17..867 4240 99.9 Plus
Mppe-RB 1763 CG8889-RB 460..1316 17..867 4170 99.2 Plus
Mppe-RE 1790 CG8889-RE 892..1343 416..867 2245 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12026121..12026572 867..416 2245 99.8 Minus
2R 25286936 2R 12026723..12026988 415..150 1330 100 Minus
2R 25286936 2R 12027038..12027153 156..41 565 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 23:58:03 has no hits.

BO07068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:19 Download gff for BO07068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8889-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:03 Download gff for BO07068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8889-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:44:40 Download gff for BO07068.5prime
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 460..1310 17..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:25 Download gff for BO07068.5prime
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 460..1310 17..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:25 Download gff for BO07068.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12026121..12026572 416..867 99 <- Minus
2R 12026723..12026985 153..415 100 <- Minus
2R 12027042..12027151 43..152 100 <- Minus
2R 12027223..12027248 17..42 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:44:40 Download gff for BO07068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7913626..7914077 416..867 99 <- Minus
arm_2R 7914228..7914490 153..415 100 <- Minus
arm_2R 7914547..7914656 43..152 100 <- Minus
arm_2R 7914728..7914753 17..42 100   Minus

BO07068.complete Sequence

1099 bp (1099 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630647

> BO07068.complete
GAAGTTATCAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGT
GCCGCGGTTTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTT
ATAGTTTACTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACT
AGATAATTGCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAA
ACTCCTACGATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGAT
AGATACCTGGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCA
CATCATAGTGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGG
CTCAAGAGTACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAAT
AAGAACTACAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGG
CGAGAATGGCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACG
AATTCATGAGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTC
AAGATAAACCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAA
TGCGGATCGTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCG
GAGGACCCCTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATT
TTCTCAGGACACTGGCATGAATCCAGAATATTTATTTACCCCTCCACCAA
GGTGATCAACTTTTATGAAAACTCCGTGAGGCATTTTGACTTGAAGGCCC
TCAAAGAGCAGGAGCACAGCTATCTGGAGATAATGGTGCCCACTTGCTCG
TATCGCATGGGAAAGTCCAAGATCGGATTGGGCTACGCGGTTTTGGAAAA
CTACAATCTGAGCTACACGGTGCTGTGGCAGCCAAATCGATTTATCCTGC
TCTTCACCTATGTTTTTTGGGGACTATTCGTCGTCTGTGGTTTCGTCGTC
TTTAAGATGATGACACGTTGTCCCTTCCGCGTGGCCAAAAGGCAGACGCT
CTATAACCGCGTCTCGACTATACCGCAATTTGCAAGCTTTCTAGACCAT

BO07068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Mppe-RA 1068 CG8889-PA 1..1065 17..1081 5325 100 Plus
Mppe-RB 1074 CG8889-PB 1..1071 17..1081 5230 99.4 Plus
Mppe-RE 1101 CG8889-PE 433..1098 416..1081 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mppe-RA 1757 CG8889-RA 460..1524 17..1081 5325 100 Plus
Mppe-RB 1763 CG8889-RB 460..1530 17..1081 5230 99.4 Plus
Mppe-RE 1790 CG8889-RE 892..1557 416..1081 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12026092..12026572 896..416 2405 100 Minus
2R 25286936 2R 12026723..12026988 415..150 1330 100 Minus
2R 25286936 2R 12025847..12026032 1081..896 930 100 Minus
2R 25286936 2R 12027038..12027153 156..41 565 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 07:47:16 has no hits.

BO07068.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:34 Download gff for BO07068.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 1..1068 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:08 Download gff for BO07068.complete
Subject Subject Range Query Range Percent Splice Strand
CG8889-RA 441..1505 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:59 Download gff for BO07068.complete
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 460..1524 17..1083 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:40 Download gff for BO07068.complete
Subject Subject Range Query Range Percent Splice Strand
Mppe-RA 460..1524 17..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:40 Download gff for BO07068.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12025845..12026031 897..1083 98 <- Minus
2R 12026092..12026572 416..896 100 <- Minus
2R 12026723..12026985 153..415 100 <- Minus
2R 12027042..12027151 43..152 100 <- Minus
2R 12027223..12027248 17..42 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:59 Download gff for BO07068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7913350..7913536 897..1083 98 <- Minus
arm_2R 7913597..7914077 416..896 100 <- Minus
arm_2R 7914228..7914490 153..415 100 <- Minus
arm_2R 7914547..7914656 43..152 100 <- Minus
arm_2R 7914728..7914753 17..42 100   Minus

BO07068.pep Sequence

Translation from 16 to 1099

> BO07068.pep
MASLRVVNRLVCRGFVALTLLLVFFNEFIVYYMAQSSWQPIDCKLDNCTR
LLLIADPQILGNSYDRSSHSPLARYDSDRYLAKTFERALAFTQPHIIVFL
GDLLDEGNIATAQEYKQYVQRFRRIYQNKNYKKRVHVPGDNDIGGENGDY
ISNSNQRRFENEFMSEDLFDYDNRLRFFKINRMLLDFSNPDRDNNADRLR
IGVSHAPLLIGGGPLLRAIISDLDPHIIFSGHWHESRIFIYPSTKVINFY
ENSVRHFDLKALKEQEHSYLEIMVPTCSYRMGKSKIGLGYAVLENYNLSY
TVLWQPNRFILLFTYVFWGLFVVCGFVVFKMMTRCPFRVAKRQTLYNRVS
TIPQFASFLDH

BO07068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Mppe-PA 355 CG8889-PA 1..355 1..355 1882 100 Plus
Mppe-PB 357 CG8889-PB 1..357 1..355 1869 99.4 Plus
Mppe-PD 364 CG8889-PD 1..364 1..355 1862 97.5 Plus
Mppe-PE 366 CG8889-PE 1..366 1..355 1849 97 Plus