Clone Sequence Records
BO07070.3prime Sequence
860 bp (717 high quality bases) assembled on 2005-12-03
> BO07070.3prime
ATGGTCTAGAAAGCTTGCTTGCCAAACGCCCGCATAGTTGCCCACCAAAG
TCGCCGGCAGTGGTCCTCCTGCAGCGAAGAGGCGCATCCTAGTGCTGTCA
TAGCAGTGGGTGTAGATGGCGGGCACATACTTCACCTGCTGGAAGCCATC
CATCTCATCCTCCGGATACACAATTCCTTTGCTGCACTTGAGTGCGACTG
TGCGCGAGGCATTCACACTGCTCTCCAAATACTTTCCGGCTCGAATGTCG
TAGAATAGGAGCATGCCCAGACCCGTGCCAACGGTGAGCAGGTTACCTTC
GAACGAAGTCGCCCGTATACCGCAGCCACTGTATCGAGATGTGATCTTCT
TAATGGTTTGAAGGGTTCGGGCGTCCAAAAGGATGGTATAGGAACGGCAT
CCAACGGCATAAAGGCCGTCGCTGTGGTAGGCGATGCTCACGTTGTCCTG
GCAGTTTGGCAGCTTTCGTGAGAGTGTCTGCTTGAAGGTCTCCGCATTGA
AGATGTGAATGTATCCGTTCAGCGAGAGGGCGGCGATCTCCTTAAACTCC
TTGTTGAAGCAAAGAGATCGAATCCTCTGGGCAGTGCGAACTTCCTTGAC
ACTAAGGGGGTGGATGGTTGCGAATGTGGGACACGCTTCCTCGCCGCCAT
CTGGAAACTCCATGTGATCCTCGTTGATGCGCCACAGAGCCATGCGCGAG
TCCTTCGATCCGGACACAAGAAACTGGTCATCCAGCCAGCACATGCCCAT
TATAAGGTCGCGGTGCCCACCCTCGCCCACACAGACGGGATCCAGCGTAG
GCAGTCGGTAAACAGCAATATCGGAGGAGTTGCGCGCACCGGTGGCTAGG
AAGGATCGGC
BO07070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3313-PA | 1380 | CG3313-RA | 536..1377 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3313-RB | 1897 | CG3313-RB | 749..1590 | 860..19 | 4210 | 100 | Minus |
CG3313-RA | 1783 | CG3313-RA | 635..1476 | 860..19 | 4210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12015464..12015869 | 169..574 | 2030 | 100 | Plus |
3R | 32079331 | 3R | 12015928..12016214 | 574..860 | 1435 | 100 | Plus |
3R | 32079331 | 3R | 12015250..12015400 | 19..169 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:09:21 has no hits.
BO07070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:22 Download gff for
BO07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-PA | 536..1380 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:07 Download gff for
BO07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-PA | 536..1380 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:03 Download gff for
BO07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 596..1443 | 11..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:59 Download gff for
BO07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 635..1482 | 11..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:59 Download gff for
BO07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12015244..12015399 | 11..168 | 97 | <- | Plus |
3R | 12015464..12015868 | 169..573 | 100 | <- | Plus |
3R | 12015928..12016214 | 574..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:03 Download gff for
BO07070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7840966..7841121 | 11..168 | 97 | <- | Plus |
arm_3R | 7841186..7841590 | 169..573 | 100 | <- | Plus |
arm_3R | 7841650..7841936 | 574..860 | 100 | | Plus |
BO07070.5prime Sequence
857 bp (752 high quality bases) assembled on 2005-12-03
> BO07070.5prime
GAAGTTATCAGTCGACATGTTCAACGGGATGGTGAGAACCATCCGCGACA
GCGTCGTGGGCACCTATCCGTCCTGCCACGTATCCTCGCGGCTGGAGGAG
CGCAGGGCCAAGCAGCGGGCGATGCGACAGGAGCGTAGACGAAAACCGGA
CAAACCAGACGACTTTGTTACTTACGAGGATTCCGGCAGCGACGAGGAGA
CGCCCCAACAGCAGGAGGAGGTCCTGAACACATCCTACAACCTGTGCGAC
TACCTGCGCAGCCGGGAGAGTGGACTCCGAGATCGTCGCAGTGTCAATGT
GGAGTACACCAGCCGCTATGTGCTAACCCACGACATGCTGCGCGAGACGC
AGATTAGTCTGGGCTACATCAACAAGGTCTTCTGCTCCAAGTGGCTGAGC
AGTCGACAAGTGGTTTTCGGGACCAAGTGCAATAAACTGCTCGTCTACGA
TGTGAACATGCGCCGGGTGGACGCCATCCCAACGCTCTCAAATAGCCGGG
CAAACCATCCTGAGGTCCAGGGTGGCCTGCATGCCATCGAGCTGTCGCCC
AGCCGATCCTTCCTAGCCACCGGTGCGCGCAACTCCTCCGATATTGCTGT
TTACCGACTGCCTACGCTGGATCCCGTCTGTGTGGGCGAGGGTGGGCACC
GCGACCTTATAATGGGCATGTGCTGGCTGGATGACCAGTTTCTTGTGTCC
GGATCGAAGGACTCGCGCATGGCTCTGTGGCGCATCAACGAGGATCACAT
GGAGTTTCCAGATGGCGGCGAGGAAGCGTGTCCCACATTCGCAACCATCC
ACCCCCTTAGTGTCAAGGAAGTTCGCACTGCCCAGAGGATTCGATCTCTT
TGCTTCA
BO07070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3313-PA | 1380 | CG3313-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3313-RB | 1897 | CG3313-RB | 214..1054 | 17..857 | 4205 | 100 | Plus |
CG3313-RA | 1783 | CG3313-RA | 100..940 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12015928..12016482 | 838..284 | 2775 | 100 | Minus |
3R | 32079331 | 3R | 12016552..12016818 | 283..17 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:25:34 has no hits.
BO07070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:24 Download gff for
BO07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:08 Download gff for
BO07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:17 Download gff for
BO07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 61..900 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:59 Download gff for
BO07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 100..939 | 17..856 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:59 Download gff for
BO07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12016552..12016818 | 17..283 | 100 | | Minus |
3R | 12015851..12015868 | 839..856 | 100 | <- | Minus |
3R | 12015928..12016482 | 284..838 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:17 Download gff for
BO07070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7841573..7841590 | 839..856 | 100 | <- | Minus |
arm_3R | 7841650..7842204 | 284..838 | 100 | <- | Minus |
arm_3R | 7842274..7842540 | 17..283 | 100 | | Minus |
BO07070.complete Sequence
1411 bp (1411 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630648
> BO07070.complete
GAAGTTATCAGTCGACATGTTCAACGGGATGGTGAGAACCATCCGCGACA
GCGTCGTGGGCACCTATCCGTCCTGCCACGTATCCTCGCGGCTGGAGGAG
CGCAGGGCCAAGCAGCGGGCGATGCGACAGGAGCGTAGACGAAAACCGGA
CAAACCAGACGACTTTGTTACTTACGAGGATTCCGGCAGCGACGAGGAGA
CGCCCCAACAGCAGGAGGAGGTCCTGAACACATCCTACAACCTGTGCGAC
TACCTGCGCAGCCGGGAGAGTGGACTCCGAGATCGTCGCAGTGTCAATGT
GGAGTACACCAGCCGCTATGTGCTAACCCACGACATGCTGCGCGAGACGC
AGATTAGTCTGGGCTACATCAACAAGGTCTTCTGCTCCAAGTGGCTGAGC
AGTCGACAAGTGGTTTTCGGGACCAAGTGCAATAAACTGCTCGTCTACGA
TGTGAACATGCGCCGGGTGGACGCCATCCCAACGCTCTCAAATAGCCGGG
CAAACCATCCTGAGGTCCAGGGTGGCCTGCATGCCATCGAGCTGTCGCCC
AGCCGATCCTTCCTAGCCACCGGTGCGCGCAACTCCTCCGATATTGCTGT
TTACCGACTGCCTACGCTGGATCCCGTCTGTGTGGGCGAGGGTGGGCACC
GCGACCTTATAATGGGCATGTGCTGGCTGGATGACCAGTTTCTTGTGTCC
GGATCGAAGGACTCGCGCATGGCTCTGTGGCGCATCAACGAGGATCACAT
GGAGTTTCCAGATGGCGGCGAGGAAGCGTGTCCCACATTCGCAACCATCC
ACCCCCTTAGTGTCAAGGAAGTTCGCACTGCCCAGAGGATTCGATCTCTT
TGCTTCAACAAGGAGTTTAAGGAGATCGCCGCCCTCTCGCTGAACGGATA
CATTCACATCTTCAATGCGGAGACCTTCAAGCAGACACTCTCACGAAAGC
TGCCAAACTGCCAGGACAACGTGAGCATCGCCTACCACAGCGACGGCCTT
TATGCCGTTGGATGCCGTTCCTATACCATCCTTTTGGACGCCCGAACCCT
TCAAACCATTAAGAAGATCACATCTCGATACAGTGGCTGCGGTATACGGG
CGACTTCGTTCGAAGGTAACCTGCTCACCGTTGGCACGGGTCTGGGCATG
CTCCTATTCTACGACATTCGAGCCGGAAAGTATTTGGAGAGCAGTGTGAA
TGCCTCGCGCACAGTCGCACTCAAGTGCAGCAAAGGAATTGTGTATCCGG
AGGATGAGATGGATGGCTTCCAGCAGGTGAAGTATGTGCCCGCCATCTAC
ACCCACTGCTATGACAGCACTAGGATGCGCCTCTTCGCTGCAGGAGGACC
ACTGCCGGCGACTTTGGTGGGCAACTATGCGGGCGTTTGGCAAGCAAGCT
TTCTAGACCAT
BO07070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3313-RB | 1380 | CG3313-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
CG3313-RA | 1380 | CG3313-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3313-RB | 1897 | CG3313-RB | 214..1590 | 17..1393 | 6885 | 100 | Plus |
CG3313-RA | 1783 | CG3313-RA | 100..1476 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12015928..12016482 | 838..284 | 2775 | 100 | Minus |
3R | 32079331 | 3R | 12015464..12015869 | 1243..838 | 2030 | 100 | Minus |
3R | 32079331 | 3R | 12016552..12016818 | 283..17 | 1335 | 100 | Minus |
3R | 32079331 | 3R | 12015250..12015400 | 1393..1243 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:59:43 has no hits.
BO07070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:36 Download gff for
BO07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 1..1380 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:10 Download gff for
BO07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 214..1596 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:13 Download gff for
BO07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 66..1437 | 22..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:36 Download gff for
BO07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 214..1596 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:25 Download gff for
BO07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3313-RA | 105..1476 | 22..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:25 Download gff for
BO07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12015248..12015399 | 1244..1395 | 98 | <- | Minus |
3R | 12015464..12015868 | 839..1243 | 100 | <- | Minus |
3R | 12015928..12016482 | 284..838 | 100 | <- | Minus |
3R | 12016552..12016813 | 22..283 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:13 Download gff for
BO07070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7840970..7841121 | 1244..1395 | 98 | <- | Minus |
arm_3R | 7841186..7841590 | 839..1243 | 100 | <- | Minus |
arm_3R | 7841650..7842204 | 284..838 | 100 | <- | Minus |
arm_3R | 7842274..7842535 | 22..283 | 100 | | Minus |
BO07070.pep Sequence
Translation from 16 to 1411
> BO07070.pep
MFNGMVRTIRDSVVGTYPSCHVSSRLEERRAKQRAMRQERRRKPDKPDDF
VTYEDSGSDEETPQQQEEVLNTSYNLCDYLRSRESGLRDRRSVNVEYTSR
YVLTHDMLRETQISLGYINKVFCSKWLSSRQVVFGTKCNKLLVYDVNMRR
VDAIPTLSNSRANHPEVQGGLHAIELSPSRSFLATGARNSSDIAVYRLPT
LDPVCVGEGGHRDLIMGMCWLDDQFLVSGSKDSRMALWRINEDHMEFPDG
GEEACPTFATIHPLSVKEVRTAQRIRSLCFNKEFKEIAALSLNGYIHIFN
AETFKQTLSRKLPNCQDNVSIAYHSDGLYAVGCRSYTILLDARTLQTIKK
ITSRYSGCGIRATSFEGNLLTVGTGLGMLLFYDIRAGKYLESSVNASRTV
ALKCSKGIVYPEDEMDGFQQVKYVPAIYTHCYDSTRMRLFAAGGPLPATL
VGNYAGVWQASFLDH
BO07070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3313-PB | 459 | CG3313-PB | 1..459 | 1..459 | 2409 | 100 | Plus |
CG3313-PA | 459 | CG3313-PA | 1..459 | 1..459 | 2409 | 100 | Plus |