Clone BO07070 Report

Search the DGRC for BO07070

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG3313-RA
Protein status:BO07070.pep: validated full length
Sequenced Size:1411

Clone Sequence Records

BO07070.3prime Sequence

860 bp (717 high quality bases) assembled on 2005-12-03

> BO07070.3prime
ATGGTCTAGAAAGCTTGCTTGCCAAACGCCCGCATAGTTGCCCACCAAAG
TCGCCGGCAGTGGTCCTCCTGCAGCGAAGAGGCGCATCCTAGTGCTGTCA
TAGCAGTGGGTGTAGATGGCGGGCACATACTTCACCTGCTGGAAGCCATC
CATCTCATCCTCCGGATACACAATTCCTTTGCTGCACTTGAGTGCGACTG
TGCGCGAGGCATTCACACTGCTCTCCAAATACTTTCCGGCTCGAATGTCG
TAGAATAGGAGCATGCCCAGACCCGTGCCAACGGTGAGCAGGTTACCTTC
GAACGAAGTCGCCCGTATACCGCAGCCACTGTATCGAGATGTGATCTTCT
TAATGGTTTGAAGGGTTCGGGCGTCCAAAAGGATGGTATAGGAACGGCAT
CCAACGGCATAAAGGCCGTCGCTGTGGTAGGCGATGCTCACGTTGTCCTG
GCAGTTTGGCAGCTTTCGTGAGAGTGTCTGCTTGAAGGTCTCCGCATTGA
AGATGTGAATGTATCCGTTCAGCGAGAGGGCGGCGATCTCCTTAAACTCC
TTGTTGAAGCAAAGAGATCGAATCCTCTGGGCAGTGCGAACTTCCTTGAC
ACTAAGGGGGTGGATGGTTGCGAATGTGGGACACGCTTCCTCGCCGCCAT
CTGGAAACTCCATGTGATCCTCGTTGATGCGCCACAGAGCCATGCGCGAG
TCCTTCGATCCGGACACAAGAAACTGGTCATCCAGCCAGCACATGCCCAT
TATAAGGTCGCGGTGCCCACCCTCGCCCACACAGACGGGATCCAGCGTAG
GCAGTCGGTAAACAGCAATATCGGAGGAGTTGCGCGCACCGGTGGCTAGG
AAGGATCGGC

BO07070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-PA 1380 CG3313-RA 536..1377 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-RB 1897 CG3313-RB 749..1590 860..19 4210 100 Minus
CG3313-RA 1783 CG3313-RA 635..1476 860..19 4210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12015464..12015869 169..574 2030 100 Plus
3R 32079331 3R 12015928..12016214 574..860 1435 100 Plus
3R 32079331 3R 12015250..12015400 19..169 755 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:09:21 has no hits.

BO07070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:22 Download gff for BO07070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-PA 536..1380 18..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:07 Download gff for BO07070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-PA 536..1380 18..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:03 Download gff for BO07070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 596..1443 11..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:59 Download gff for BO07070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 635..1482 11..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:59 Download gff for BO07070.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12015244..12015399 11..168 97 <- Plus
3R 12015464..12015868 169..573 100 <- Plus
3R 12015928..12016214 574..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:03 Download gff for BO07070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7840966..7841121 11..168 97 <- Plus
arm_3R 7841186..7841590 169..573 100 <- Plus
arm_3R 7841650..7841936 574..860 100   Plus

BO07070.5prime Sequence

857 bp (752 high quality bases) assembled on 2005-12-03

> BO07070.5prime
GAAGTTATCAGTCGACATGTTCAACGGGATGGTGAGAACCATCCGCGACA
GCGTCGTGGGCACCTATCCGTCCTGCCACGTATCCTCGCGGCTGGAGGAG
CGCAGGGCCAAGCAGCGGGCGATGCGACAGGAGCGTAGACGAAAACCGGA
CAAACCAGACGACTTTGTTACTTACGAGGATTCCGGCAGCGACGAGGAGA
CGCCCCAACAGCAGGAGGAGGTCCTGAACACATCCTACAACCTGTGCGAC
TACCTGCGCAGCCGGGAGAGTGGACTCCGAGATCGTCGCAGTGTCAATGT
GGAGTACACCAGCCGCTATGTGCTAACCCACGACATGCTGCGCGAGACGC
AGATTAGTCTGGGCTACATCAACAAGGTCTTCTGCTCCAAGTGGCTGAGC
AGTCGACAAGTGGTTTTCGGGACCAAGTGCAATAAACTGCTCGTCTACGA
TGTGAACATGCGCCGGGTGGACGCCATCCCAACGCTCTCAAATAGCCGGG
CAAACCATCCTGAGGTCCAGGGTGGCCTGCATGCCATCGAGCTGTCGCCC
AGCCGATCCTTCCTAGCCACCGGTGCGCGCAACTCCTCCGATATTGCTGT
TTACCGACTGCCTACGCTGGATCCCGTCTGTGTGGGCGAGGGTGGGCACC
GCGACCTTATAATGGGCATGTGCTGGCTGGATGACCAGTTTCTTGTGTCC
GGATCGAAGGACTCGCGCATGGCTCTGTGGCGCATCAACGAGGATCACAT
GGAGTTTCCAGATGGCGGCGAGGAAGCGTGTCCCACATTCGCAACCATCC
ACCCCCTTAGTGTCAAGGAAGTTCGCACTGCCCAGAGGATTCGATCTCTT
TGCTTCA

BO07070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-PA 1380 CG3313-RA 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-RB 1897 CG3313-RB 214..1054 17..857 4205 100 Plus
CG3313-RA 1783 CG3313-RA 100..940 17..857 4205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12015928..12016482 838..284 2775 100 Minus
3R 32079331 3R 12016552..12016818 283..17 1335 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:25:34 has no hits.

BO07070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:24 Download gff for BO07070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:08 Download gff for BO07070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:17 Download gff for BO07070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 61..900 17..856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:59 Download gff for BO07070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 100..939 17..856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:59 Download gff for BO07070.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12016552..12016818 17..283 100   Minus
3R 12015851..12015868 839..856 100 <- Minus
3R 12015928..12016482 284..838 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:17 Download gff for BO07070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7841573..7841590 839..856 100 <- Minus
arm_3R 7841650..7842204 284..838 100 <- Minus
arm_3R 7842274..7842540 17..283 100   Minus

BO07070.complete Sequence

1411 bp (1411 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630648

> BO07070.complete
GAAGTTATCAGTCGACATGTTCAACGGGATGGTGAGAACCATCCGCGACA
GCGTCGTGGGCACCTATCCGTCCTGCCACGTATCCTCGCGGCTGGAGGAG
CGCAGGGCCAAGCAGCGGGCGATGCGACAGGAGCGTAGACGAAAACCGGA
CAAACCAGACGACTTTGTTACTTACGAGGATTCCGGCAGCGACGAGGAGA
CGCCCCAACAGCAGGAGGAGGTCCTGAACACATCCTACAACCTGTGCGAC
TACCTGCGCAGCCGGGAGAGTGGACTCCGAGATCGTCGCAGTGTCAATGT
GGAGTACACCAGCCGCTATGTGCTAACCCACGACATGCTGCGCGAGACGC
AGATTAGTCTGGGCTACATCAACAAGGTCTTCTGCTCCAAGTGGCTGAGC
AGTCGACAAGTGGTTTTCGGGACCAAGTGCAATAAACTGCTCGTCTACGA
TGTGAACATGCGCCGGGTGGACGCCATCCCAACGCTCTCAAATAGCCGGG
CAAACCATCCTGAGGTCCAGGGTGGCCTGCATGCCATCGAGCTGTCGCCC
AGCCGATCCTTCCTAGCCACCGGTGCGCGCAACTCCTCCGATATTGCTGT
TTACCGACTGCCTACGCTGGATCCCGTCTGTGTGGGCGAGGGTGGGCACC
GCGACCTTATAATGGGCATGTGCTGGCTGGATGACCAGTTTCTTGTGTCC
GGATCGAAGGACTCGCGCATGGCTCTGTGGCGCATCAACGAGGATCACAT
GGAGTTTCCAGATGGCGGCGAGGAAGCGTGTCCCACATTCGCAACCATCC
ACCCCCTTAGTGTCAAGGAAGTTCGCACTGCCCAGAGGATTCGATCTCTT
TGCTTCAACAAGGAGTTTAAGGAGATCGCCGCCCTCTCGCTGAACGGATA
CATTCACATCTTCAATGCGGAGACCTTCAAGCAGACACTCTCACGAAAGC
TGCCAAACTGCCAGGACAACGTGAGCATCGCCTACCACAGCGACGGCCTT
TATGCCGTTGGATGCCGTTCCTATACCATCCTTTTGGACGCCCGAACCCT
TCAAACCATTAAGAAGATCACATCTCGATACAGTGGCTGCGGTATACGGG
CGACTTCGTTCGAAGGTAACCTGCTCACCGTTGGCACGGGTCTGGGCATG
CTCCTATTCTACGACATTCGAGCCGGAAAGTATTTGGAGAGCAGTGTGAA
TGCCTCGCGCACAGTCGCACTCAAGTGCAGCAAAGGAATTGTGTATCCGG
AGGATGAGATGGATGGCTTCCAGCAGGTGAAGTATGTGCCCGCCATCTAC
ACCCACTGCTATGACAGCACTAGGATGCGCCTCTTCGCTGCAGGAGGACC
ACTGCCGGCGACTTTGGTGGGCAACTATGCGGGCGTTTGGCAAGCAAGCT
TTCTAGACCAT

BO07070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-RB 1380 CG3313-PB 1..1377 17..1393 6885 100 Plus
CG3313-RA 1380 CG3313-PA 1..1377 17..1393 6885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-RB 1897 CG3313-RB 214..1590 17..1393 6885 100 Plus
CG3313-RA 1783 CG3313-RA 100..1476 17..1393 6885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12015928..12016482 838..284 2775 100 Minus
3R 32079331 3R 12015464..12015869 1243..838 2030 100 Minus
3R 32079331 3R 12016552..12016818 283..17 1335 100 Minus
3R 32079331 3R 12015250..12015400 1393..1243 755 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:59:43 has no hits.

BO07070.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:36 Download gff for BO07070.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 1..1380 17..1394 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:41:10 Download gff for BO07070.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 214..1596 17..1401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:13 Download gff for BO07070.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 66..1437 22..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:36 Download gff for BO07070.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 214..1596 17..1401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:25 Download gff for BO07070.complete
Subject Subject Range Query Range Percent Splice Strand
CG3313-RA 105..1476 22..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:25 Download gff for BO07070.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12015248..12015399 1244..1395 98 <- Minus
3R 12015464..12015868 839..1243 100 <- Minus
3R 12015928..12016482 284..838 100 <- Minus
3R 12016552..12016813 22..283 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:13 Download gff for BO07070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7840970..7841121 1244..1395 98 <- Minus
arm_3R 7841186..7841590 839..1243 100 <- Minus
arm_3R 7841650..7842204 284..838 100 <- Minus
arm_3R 7842274..7842535 22..283 100   Minus

BO07070.pep Sequence

Translation from 16 to 1411

> BO07070.pep
MFNGMVRTIRDSVVGTYPSCHVSSRLEERRAKQRAMRQERRRKPDKPDDF
VTYEDSGSDEETPQQQEEVLNTSYNLCDYLRSRESGLRDRRSVNVEYTSR
YVLTHDMLRETQISLGYINKVFCSKWLSSRQVVFGTKCNKLLVYDVNMRR
VDAIPTLSNSRANHPEVQGGLHAIELSPSRSFLATGARNSSDIAVYRLPT
LDPVCVGEGGHRDLIMGMCWLDDQFLVSGSKDSRMALWRINEDHMEFPDG
GEEACPTFATIHPLSVKEVRTAQRIRSLCFNKEFKEIAALSLNGYIHIFN
AETFKQTLSRKLPNCQDNVSIAYHSDGLYAVGCRSYTILLDARTLQTIKK
ITSRYSGCGIRATSFEGNLLTVGTGLGMLLFYDIRAGKYLESSVNASRTV
ALKCSKGIVYPEDEMDGFQQVKYVPAIYTHCYDSTRMRLFAAGGPLPATL
VGNYAGVWQASFLDH

BO07070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3313-PB 459 CG3313-PB 1..459 1..459 2409 100 Plus
CG3313-PA 459 CG3313-PA 1..459 1..459 2409 100 Plus