Clone Sequence Records
BO07072.3prime Sequence
855 bp (854 high quality bases) assembled on 2005-12-03
> BO07072.3prime
ATGGTCTAGAAAGCTTGCGAAGTCCAGGAAAGCATCGATGGCACACTGAT
TGGTCAGCTGGTCGAAATGCCTGTCCTCGTAGATACGGATTCCATCCCTG
GCTATAATCTCCCGAGGCGAGAGACTTAGCAGCTGCTTGGAGCTCAGGTT
ATAGTCCTTGTAGATGGCAATCCTTTGGAGCGCCATCACACTGCGGATAC
GCTGGCGCGGCTCAATGGTGAGCAGCTTGCGCAGCACATCCCTGCCCTCG
TGGGTGAGGTGCTGCACCTCCTCCGGCAGGAAGTCCTCGCTGTCGCCGTC
ACTGTCCTGCAGGCAGCCGTTGATCTGAGCAATGGATGGGGCATTGGACA
GGCCGTCCTCCGGCTCCACGCTCTCACGCCGTCGCAGTAGGTGGCGTTTG
ATGTTGGGCGACTTCTGCGTCAGCATCTGACAGGCAATAACGCCCAAGGC
CCACCAGTCCACCGCATGGCCATAGGGTTCCCCGCACAGAATCTCCGGGG
CCATGTATTTGAAAGTGCCACACATGGTGCGCGTGTTTGCCCCCAGTTTG
AGCCACTTGCTAAGGCCGAAGTCGGTTAGCTTTATGTGAAACTGTTCAGT
TAGCAGGATGTTCTCCGGCTTCGCATCACGATATATAATCCCAGCGTTGT
GGAGAAAATCCAAGGCAAGTGCTATCTCGCCAATGTATAAACGAACCAGA
TCAATGGAGAAGTGAGTTATTTTTGAGAACAACTCGCCGTTGGGTACGTA
CTCCGATAGAATATGGAGGTTGTGGCGGTTTTGCCACAGATCTATTTGCT
TCACGATAAACGGATGATGGCCGCAAACCTTCTGAATGTCCGCCTCGTCC
TTTAT
BO07072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7001-PA | 1452 | Pk17E-RA | 613..1449 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RC | 2123 | CG7001-RC | 975..1811 | 855..19 | 4185 | 100 | Minus |
Pk17E-RB | 1651 | CG7001-RB | 503..1339 | 855..19 | 4185 | 100 | Minus |
Pk17E-RA | 2129 | CG7001-RA | 981..1817 | 855..19 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18805292..18805581 | 413..124 | 1450 | 100 | Minus |
X | 23542271 | X | 18791300..18791459 | 660..501 | 800 | 100 | Minus |
X | 23542271 | X | 18805641..18805745 | 123..19 | 525 | 100 | Minus |
X | 23542271 | X | 18791146..18791244 | 758..660 | 495 | 100 | Minus |
X | 23542271 | X | 18790985..18791081 | 855..759 | 485 | 100 | Minus |
X | 23542271 | X | 18793758..18793847 | 501..412 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:36:11 has no hits.
BO07072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:26 Download gff for
BO07072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-PA | 613..1452 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:12 Download gff for
BO07072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7001-PA | 613..1452 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:52 Download gff for
BO07072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 981..1821 | 13..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:34 Download gff for
BO07072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 981..1821 | 13..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:34 Download gff for
BO07072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18790985..18791081 | 759..855 | 100 | -> | Minus |
X | 18791146..18791244 | 660..758 | 100 | -> | Minus |
X | 18791301..18791459 | 501..659 | 100 | -> | Minus |
X | 18793759..18793847 | 412..500 | 100 | -> | Minus |
X | 18805294..18805581 | 124..411 | 100 | -> | Minus |
X | 18805641..18805749 | 13..123 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:52 Download gff for
BO07072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18685018..18685114 | 759..855 | 100 | -> | Minus |
arm_X | 18685179..18685277 | 660..758 | 100 | -> | Minus |
arm_X | 18685334..18685492 | 501..659 | 100 | -> | Minus |
arm_X | 18687792..18687880 | 412..500 | 100 | -> | Minus |
arm_X | 18699327..18699614 | 124..411 | 100 | -> | Minus |
arm_X | 18699674..18699782 | 13..123 | 97 | | Minus |
BO07072.5prime Sequence
916 bp (800 high quality bases) assembled on 2005-12-03
> BO07072.5prime
GAAGTTATCAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAA
GCAGAAGGACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCA
GCCAGCGATCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCA
GCAGCAACAACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGT
TCCAGGCCCACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAG
GAACAGCCTGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGG
CAGCCTTAGCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACT
CATTTCGTCATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCAT
GGCTCTCGTCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAAT
CTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCG
ATCATTTGGTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGC
AAGAGTGACATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAA
GCTCATCGAAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTC
AGAAGGTTTGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGG
CAAAACCGCCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGA
GTTGTTCTCAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACA
TTGGCGAGATAGCACTTGCCTTGGATTTTCTCCCACACGCTGGGATTATA
TATCGTGATGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACAT
AAAGCTAACCGACTTT
BO07072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7001-PA | 1452 | Pk17E-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG7001-PA | 1452 | Pk17E-RA | 821..899 | 837..915 | 395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RA | 2129 | CG7001-RA | 369..1267 | 17..915 | 4450 | 99.8 | Plus |
Pk17E-RC | 2123 | CG7001-RC | 369..1261 | 17..915 | 4350 | 99.1 | Plus |
Pk17E-RB | 1651 | CG7001-RB | 145..789 | 271..915 | 3180 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18788832..18789089 | 17..274 | 1290 | 100 | Plus |
X | 23542271 | X | 18790675..18790893 | 383..601 | 1095 | 100 | Plus |
X | 23542271 | X | 18790956..18791081 | 600..725 | 630 | 100 | Plus |
X | 23542271 | X | 18790503..18790615 | 272..384 | 565 | 100 | Plus |
X | 23542271 | X | 18791146..18791244 | 726..824 | 495 | 100 | Plus |
X | 23542271 | X | 18791300..18791391 | 824..915 | 415 | 96.7 | Plus |
Blast to na_te.dros performed 2015-02-11 23:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 147..304 | 202 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 70..279 | 198 | 60.6 | Plus |
BO07072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:27 Download gff for
BO07072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-PA | 1..899 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:13 Download gff for
BO07072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7001-PA | 1..899 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:30 Download gff for
BO07072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1267 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:02 Download gff for
BO07072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1267 | 17..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:02 Download gff for
BO07072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18788832..18789089 | 17..274 | 100 | -> | Plus |
X | 18790506..18790615 | 275..384 | 100 | -> | Plus |
X | 18790677..18790893 | 385..601 | 100 | -> | Plus |
X | 18790958..18791081 | 602..725 | 100 | -> | Plus |
X | 18791146..18791244 | 726..824 | 100 | -> | Plus |
X | 18791301..18791391 | 825..916 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:30 Download gff for
BO07072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18682865..18683122 | 17..274 | 100 | -> | Plus |
arm_X | 18684539..18684648 | 275..384 | 100 | -> | Plus |
arm_X | 18684710..18684926 | 385..601 | 100 | -> | Plus |
arm_X | 18684991..18685114 | 602..725 | 100 | -> | Plus |
arm_X | 18685179..18685277 | 726..824 | 100 | -> | Plus |
arm_X | 18685334..18685424 | 825..916 | 96 | | Plus |
BO07072.complete Sequence
1483 bp (1483 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630649
> BO07072.complete
GAAGTTATCAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAA
GCAGAAGGACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCA
GCCAGCGATCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCA
GCAGCAACAACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGT
TCCAGGCCCACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAG
GAACAGCCTGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGG
CAGCCTTAGCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACT
CATTTCGTCATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCAT
GGCTCTCGTCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAAT
CTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCG
ATCATTTGGTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGC
AAGAGTGACATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAA
GCTCATCGAAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTC
AGAAGGTTTGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGG
CAAAACCGCCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGA
GTTGTTCTCAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACA
TTGGCGAGATAGCACTTGCCTTGGATTTTCTCCACAACGCTGGGATTATA
TATCGTGATGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACAT
AAAGCTAACCGACTTCGGCCTTAGCAAGTGGCTCAAACTGGGGGCAAACA
CGCGCACCATGTGTGGCACTTTCAAATACATGGCCCCGGAGATTCTGTGC
GGGGAACCCTATGGCCATGCGGTGGACTGGTGGGCCTTGGGCGTTATTGC
CTGTCAGATGCTGACGCAGAAGTCGCCCAACATCAAACGCCACCTACTGC
GACGGCGTGAGAGCGTGGAGCCGGAGGACGGCCTGTCCAATGCCCCATCC
ATTGCTCAGATCAACGGCTGCCTGCAGGACAGTGACGGCGACAGCGAGGA
CTTCCTGCCGGAGGAGGTGCAGCACCTCACCCACGAGGGCAGGGATGTGC
TGCGCAAGCTGCTCACCATTGAGCCGCGCCAGCGTATCCGCAGTGTGATG
GCGCTCCAAAGGATTGCCATCTACAAGGACTATAACCTGAGCTCCAAGCA
GCTGCTAAGTCTCTCGCCTCGGGAGATTATAGCCAGGGATGGAATCCGTA
TCTACGAGGACAGGCATTTCGACCAGCTGACCAATCAGTGTGCCATCGAT
GCTTTCCTGGACTTCGCAAGCTTTCTAGACCAT
BO07072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RA | 1452 | CG7001-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
Pk17E-RC | 1446 | CG7001-PC | 1..1443 | 17..1465 | 7120 | 99.6 | Plus |
Pk17E-RB | 510 | CG7001-PB | 1..507 | 959..1465 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-RA | 2129 | CG7001-RA | 369..1817 | 17..1465 | 7245 | 100 | Plus |
Pk17E-RC | 2123 | CG7001-RC | 369..1811 | 17..1465 | 7120 | 99.6 | Plus |
Pk17E-RB | 1651 | CG7001-RB | 145..1339 | 271..1465 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18805292..18805581 | 1071..1360 | 1450 | 100 | Plus |
X | 23542271 | X | 18788832..18789089 | 17..274 | 1290 | 100 | Plus |
X | 23542271 | X | 18790675..18790893 | 383..601 | 1095 | 100 | Plus |
X | 23542271 | X | 18791300..18791459 | 824..983 | 800 | 100 | Plus |
X | 23542271 | X | 18790956..18791081 | 600..725 | 630 | 100 | Plus |
X | 23542271 | X | 18790503..18790615 | 272..384 | 565 | 100 | Plus |
X | 23542271 | X | 18805641..18805745 | 1361..1465 | 525 | 100 | Plus |
X | 23542271 | X | 18791146..18791244 | 726..824 | 495 | 100 | Plus |
X | 23542271 | X | 18793758..18793847 | 983..1072 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 147..304 | 202 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 70..279 | 198 | 60.6 | Plus |
BO07072.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:38 Download gff for
BO07072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 1..1452 | 17..1466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:01 Download gff for
BO07072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 367..1815 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:58 Download gff for
BO07072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1817 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:38 Download gff for
BO07072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 367..1819 | 17..1471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:47 Download gff for
BO07072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pk17E-RA | 369..1817 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:47 Download gff for
BO07072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18791146..18791244 | 726..824 | 100 | -> | Plus |
X | 18790958..18791081 | 602..725 | 100 | -> | Plus |
X | 18791301..18791459 | 825..983 | 100 | -> | Plus |
X | 18793759..18793847 | 984..1072 | 100 | -> | Plus |
X | 18788832..18789089 | 17..274 | 100 | -> | Plus |
X | 18790506..18790615 | 275..384 | 100 | -> | Plus |
X | 18790677..18790893 | 385..601 | 100 | -> | Plus |
X | 18805294..18805581 | 1073..1360 | 100 | -> | Plus |
X | 18805641..18805745 | 1361..1467 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:58 Download gff for
BO07072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18684991..18685114 | 602..725 | 100 | -> | Plus |
arm_X | 18685179..18685277 | 726..824 | 100 | -> | Plus |
arm_X | 18685334..18685492 | 825..983 | 100 | -> | Plus |
arm_X | 18687792..18687880 | 984..1072 | 100 | -> | Plus |
arm_X | 18699327..18699614 | 1073..1360 | 100 | -> | Plus |
arm_X | 18699674..18699778 | 1361..1467 | 98 | | Plus |
arm_X | 18682865..18683122 | 17..274 | 100 | -> | Plus |
arm_X | 18684539..18684648 | 275..384 | 100 | -> | Plus |
arm_X | 18684710..18684926 | 385..601 | 100 | -> | Plus |
BO07072.pep Sequence
Translation from 16 to 1483
> BO07072.pep
MGNSQPRNASRSRRTSQWPQGAAELGASASDHHYHQEELYQEQQQQQQQP
QQEQPSSRRIQFQAHTNQPTQSHPPGDEEQPVQSQQQQLSTWSLGSLSGG
RLNWSFSGARNSFRHRNKATRKSLTSLHGSRRGKTQWHRPLTNSIFNSHF
KETSKNDLYRIDHLVAKGAFGVVFKVSSKSDISQCYALKVLKKSKLIEDN
SVRQIKDEADIQKVCGHHPFIVKQIDLWQNRHNLHILSEYVPNGELFSKI
THFSIDLVRLYIGEIALALDFLHNAGIIYRDAKPENILLTEQFHIKLTDF
GLSKWLKLGANTRTMCGTFKYMAPEILCGEPYGHAVDWWALGVIACQMLT
QKSPNIKRHLLRRRESVEPEDGLSNAPSIAQINGCLQDSDGDSEDFLPEE
VQHLTHEGRDVLRKLLTIEPRQRIRSVMALQRIAIYKDYNLSSKQLLSLS
PREIIARDGIRIYEDRHFDQLTNQCAIDAFLDFASFLDH
BO07072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pk17E-PA | 483 | CG7001-PA | 1..483 | 1..483 | 2544 | 100 | Plus |
Pk17E-PC | 481 | CG7001-PC | 1..481 | 1..483 | 2521 | 99.6 | Plus |
Pk17E-PB | 169 | CG7001-PB | 1..169 | 315..483 | 889 | 100 | Plus |
S6k-PB | 490 | CG10539-PB | 77..324 | 159..426 | 387 | 36.7 | Plus |
S6k-PA | 490 | CG10539-PA | 77..324 | 159..426 | 387 | 36.7 | Plus |