Clone BO07073 Report

Search the DGRC for BO07073

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG10157-RA
Protein status:BO07073.pep: validated full length
Sequenced Size:655

Clone Sequence Records

BO07073.3prime Sequence

653 bp (652 high quality bases) assembled on 2005-12-03

> BO07073.3prime
ATGGTCTAGAAAGCTTGCTTGACAATTATTTAGCTGCTTATTGAACTTTT
CCTTATACTTGGCGCAAAAAATGGCATCAAAATGATCAGTTAAGTTTGCT
GATAGATCCGCGTTATAAACGTTATCCAGAGCTACGGCTGGCACTCCCTG
AAATGAGACCTTGGCCGTTTCCTTGCCGTACTTCCTCAGAATGTCGTTCA
CCTGTCGCGTTTTCTTGCAATTTTTGACATCGCCCACGTCGATTTGATAG
TGGTCAGCGCACTTTTCCAGCCTGTTCTTCTTACCCCTCATCATGCAGGC
GATCAGCTTGAGGGATTGGGCAATGTCATGGTGCTCCAGTATGCAGGCGT
GCCACGCGTTCAATTCGCACTCCATCACTCCGTGCTGGCACTCCACATTT
CCGTCATCGTTCGTCCTGGCATTTCCATAAGGAACCAGCGTAAGATCAGT
GAATGGAAGTCGATCCTGACGGACCATCGAGGGATTGAGCTGCGTGGTCA
CGAACTCCATGCAGTAGGGACACAATGCTTCGTAGTACAGGGTGATCGCC
AGTCGGTCAGCTTGCGGTCCGCGCAAACGCCTTGGCGTGGCCACGCCCAC
CCATCCCAGCAGCAGACACACAAAGACAGCCGCCCTCATGTCGACTGATA
ACT

BO07073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10157-PA 624 CG10157-RA 1..621 639..19 3105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
GILT2-RA 712 CG10157-RA 73..694 640..19 3110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23679383..23679679 415..119 1485 100 Minus
3R 32079331 3R 23679093..23679258 580..415 830 100 Minus
3R 32079331 3R 23679732..23679837 124..19 515 99.1 Minus
3R 32079331 3R 23678967..23679027 640..580 305 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:33:47 has no hits.

BO07073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:29 Download gff for BO07073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10157-PA 1..624 15..639 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:14 Download gff for BO07073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10157-PA 1..624 15..639 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:19 Download gff for BO07073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 73..702 11..640 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:12 Download gff for BO07073.3prime
Subject Subject Range Query Range Percent Splice Strand
GILT2-RA 73..702 11..640 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:12 Download gff for BO07073.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23678967..23679027 580..640 100 -> Minus
3R 23679094..23679258 415..579 100 -> Minus
3R 23679384..23679677 121..414 100 -> Minus
3R 23679736..23679845 11..120 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:19 Download gff for BO07073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19504689..19504749 580..640 100 -> Minus
arm_3R 19504816..19504980 415..579 100 -> Minus
arm_3R 19505106..19505399 121..414 100 -> Minus
arm_3R 19505458..19505567 11..120 96   Minus

BO07073.5prime Sequence

653 bp (652 high quality bases) assembled on 2005-12-03

> BO07073.5prime
GAAGTTATCAGTCGACATGAGGGCGGCTGTCTTTGTGTGTCTGCTGCTGG
GATGGGTGGGCGTGGCCACGCCAAGGCGTTTGCGCGGACCGCAAGCTGAC
CGACTGGCGATCACCCTGTACTACGAAGCATTGTGTCCCTACTGCATGGA
GTTCGTGACCACGCAGCTCAATCCCTCGATGGTCCGTCAGGATCGACTTC
CATTCACTGATCTTACGCTGGTTCCTTATGGAAATGCCAGGACGAACGAT
GACGGAAATGTGGAGTGCCAGCACGGAGTGATGGAGTGCGAATTGAACGC
GTGGCACGCCTGCATACTGGAGCACCATGACATTGCCCAATCCCTCAAGC
TGATCGCCTGCATGATGAGGGGTAAGAAGAACAGGCTGGAAAAGTGCGCT
GACCACTATCAAATCGACGTGGGCGATGTCAAAAATTGCAAGAAAACGCG
ACAGGTGAACGACATTCTGAGGAAGTACGGCAAGGAAACGGCCAAGGTCT
CATTTCAGGGAGTGCCAGCCGTAGCTCTGGATAACGTTTATAACGCGGAT
CTATCAGCAAACTTAACTGATCATTTTGATGCCATTTTTTGCGCCAAGTA
TAAGGAAAAGTTCAATAAGCAGCTAAATAATTGTCAAGCAAGCTTTCTAG
ACC

BO07073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10157-PA 624 CG10157-RA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
GILT2-RA 712 CG10157-RA 73..694 16..637 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23679383..23679679 241..537 1485 100 Plus
3R 32079331 3R 23679093..23679258 76..241 830 100 Plus
3R 32079331 3R 23679732..23679837 532..637 515 99.1 Plus
3R 32079331 3R 23678967..23679027 16..76 305 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:26:48 has no hits.

BO07073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:30 Download gff for BO07073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10157-PA 1..624 17..641 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:16 Download gff for BO07073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10157-PA 1..624 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:52 Download gff for BO07073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 73..702 16..645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:23 Download gff for BO07073.5prime
Subject Subject Range Query Range Percent Splice Strand
GILT2-RA 73..702 16..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:23 Download gff for BO07073.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23678967..23679027 16..76 100 -> Plus
3R 23679094..23679258 77..241 100 -> Plus
3R 23679384..23679677 242..535 100 -> Plus
3R 23679736..23679845 536..645 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:52 Download gff for BO07073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19504816..19504980 77..241 100 -> Plus
arm_3R 19504689..19504749 16..76 100 -> Plus
arm_3R 19505106..19505399 242..535 100 -> Plus
arm_3R 19505458..19505567 536..645 96   Plus

BO07073.complete Sequence

655 bp (655 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630650

> BO07073.complete
GAAGTTATCAGTCGACATGAGGGCGGCTGTCTTTGTGTGTCTGCTGCTGG
GATGGGTGGGCGTGGCCACGCCAAGGCGTTTGCGCGGACCGCAAGCTGAC
CGACTGGCGATCACCCTGTACTACGAAGCATTGTGTCCCTACTGCATGGA
GTTCGTGACCACGCAGCTCAATCCCTCGATGGTCCGTCAGGATCGACTTC
CATTCACTGATCTTACGCTGGTTCCTTATGGAAATGCCAGGACGAACGAT
GACGGAAATGTGGAGTGCCAGCACGGAGTGATGGAGTGCGAATTGAACGC
GTGGCACGCCTGCATACTGGAGCACCATGACATTGCCCAATCCCTCAAGC
TGATCGCCTGCATGATGAGGGGTAAGAAGAACAGGCTGGAAAAGTGCGCT
GACCACTATCAAATCGACGTGGGCGATGTCAAAAATTGCAAGAAAACGCG
ACAGGTGAACGACATTCTGAGGAAGTACGGCAAGGAAACGGCCAAGGTCT
CATTTCAGGGAGTGCCAGCCGTAGCTCTGGATAACGTTTATAACGCGGAT
CTATCAGCAAACTTAACTGATCATTTTGATGCCATTTTTTGCGCCAAGTA
TAAGGAAAAGTTCAATAAGCAGCTAAATAATTGTCAAGCAAGCTTTCTAG
ACCAT

BO07073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
GILT2-RA 624 CG10157-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
GILT2-RA 712 CG10157-RA 73..694 16..637 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23679383..23679679 241..537 1485 100 Plus
3R 32079331 3R 23679093..23679258 76..241 830 100 Plus
3R 32079331 3R 23679732..23679837 532..637 515 99.1 Plus
3R 32079331 3R 23678967..23679027 16..76 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:54 has no hits.

BO07073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:09 Download gff for BO07073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 1..624 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:04 Download gff for BO07073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 77..706 16..645 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:06 Download gff for BO07073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 74..694 17..639 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:10 Download gff for BO07073.complete
Subject Subject Range Query Range Percent Splice Strand
CG10157-RA 77..706 16..645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:04 Download gff for BO07073.complete
Subject Subject Range Query Range Percent Splice Strand
GILT2-RA 74..694 17..639 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:04 Download gff for BO07073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23678968..23679027 17..76 100 -> Plus
3R 23679094..23679258 77..241 100 -> Plus
3R 23679384..23679677 242..535 100 -> Plus
3R 23679736..23679837 536..639 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:06 Download gff for BO07073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19504690..19504749 17..76 100 -> Plus
arm_3R 19504816..19504980 77..241 100 -> Plus
arm_3R 19505106..19505399 242..535 100 -> Plus
arm_3R 19505458..19505559 536..639 98   Plus

BO07073.pep Sequence

Translation from 16 to 655

> BO07073.pep
MRAAVFVCLLLGWVGVATPRRLRGPQADRLAITLYYEALCPYCMEFVTTQ
LNPSMVRQDRLPFTDLTLVPYGNARTNDDGNVECQHGVMECELNAWHACI
LEHHDIAQSLKLIACMMRGKKNRLEKCADHYQIDVGDVKNCKKTRQVNDI
LRKYGKETAKVSFQGVPAVALDNVYNADLSANLTDHFDAIFCAKYKEKFN
KQLNNCQASFLDH

BO07073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
GILT2-PA 207 CG10157-PA 1..207 1..207 1117 100 Plus
GILT3-PA 216 CG13822-PA 11..214 7..208 385 38.6 Plus
CG41378-PD 205 CG41378-PD 8..172 15..172 201 29.9 Plus
CG41378-PB 228 CG41378-PB 21..195 5..172 197 28.2 Plus
CG41378-PC 196 CG41378-PC 5..163 21..172 196 29.8 Plus