Clone Sequence Records
BO07073.3prime Sequence
653 bp (652 high quality bases) assembled on 2005-12-03
> BO07073.3prime
ATGGTCTAGAAAGCTTGCTTGACAATTATTTAGCTGCTTATTGAACTTTT
CCTTATACTTGGCGCAAAAAATGGCATCAAAATGATCAGTTAAGTTTGCT
GATAGATCCGCGTTATAAACGTTATCCAGAGCTACGGCTGGCACTCCCTG
AAATGAGACCTTGGCCGTTTCCTTGCCGTACTTCCTCAGAATGTCGTTCA
CCTGTCGCGTTTTCTTGCAATTTTTGACATCGCCCACGTCGATTTGATAG
TGGTCAGCGCACTTTTCCAGCCTGTTCTTCTTACCCCTCATCATGCAGGC
GATCAGCTTGAGGGATTGGGCAATGTCATGGTGCTCCAGTATGCAGGCGT
GCCACGCGTTCAATTCGCACTCCATCACTCCGTGCTGGCACTCCACATTT
CCGTCATCGTTCGTCCTGGCATTTCCATAAGGAACCAGCGTAAGATCAGT
GAATGGAAGTCGATCCTGACGGACCATCGAGGGATTGAGCTGCGTGGTCA
CGAACTCCATGCAGTAGGGACACAATGCTTCGTAGTACAGGGTGATCGCC
AGTCGGTCAGCTTGCGGTCCGCGCAAACGCCTTGGCGTGGCCACGCCCAC
CCATCCCAGCAGCAGACACACAAAGACAGCCGCCCTCATGTCGACTGATA
ACT
BO07073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10157-PA | 624 | CG10157-RA | 1..621 | 639..19 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT2-RA | 712 | CG10157-RA | 73..694 | 640..19 | 3110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23679383..23679679 | 415..119 | 1485 | 100 | Minus |
3R | 32079331 | 3R | 23679093..23679258 | 580..415 | 830 | 100 | Minus |
3R | 32079331 | 3R | 23679732..23679837 | 124..19 | 515 | 99.1 | Minus |
3R | 32079331 | 3R | 23678967..23679027 | 640..580 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:33:47 has no hits.
BO07073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:29 Download gff for
BO07073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-PA | 1..624 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:14 Download gff for
BO07073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-PA | 1..624 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:19 Download gff for
BO07073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-RA | 73..702 | 11..640 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:12 Download gff for
BO07073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT2-RA | 73..702 | 11..640 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:12 Download gff for
BO07073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23678967..23679027 | 580..640 | 100 | -> | Minus |
3R | 23679094..23679258 | 415..579 | 100 | -> | Minus |
3R | 23679384..23679677 | 121..414 | 100 | -> | Minus |
3R | 23679736..23679845 | 11..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:19 Download gff for
BO07073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19504689..19504749 | 580..640 | 100 | -> | Minus |
arm_3R | 19504816..19504980 | 415..579 | 100 | -> | Minus |
arm_3R | 19505106..19505399 | 121..414 | 100 | -> | Minus |
arm_3R | 19505458..19505567 | 11..120 | 96 | | Minus |
BO07073.5prime Sequence
653 bp (652 high quality bases) assembled on 2005-12-03
> BO07073.5prime
GAAGTTATCAGTCGACATGAGGGCGGCTGTCTTTGTGTGTCTGCTGCTGG
GATGGGTGGGCGTGGCCACGCCAAGGCGTTTGCGCGGACCGCAAGCTGAC
CGACTGGCGATCACCCTGTACTACGAAGCATTGTGTCCCTACTGCATGGA
GTTCGTGACCACGCAGCTCAATCCCTCGATGGTCCGTCAGGATCGACTTC
CATTCACTGATCTTACGCTGGTTCCTTATGGAAATGCCAGGACGAACGAT
GACGGAAATGTGGAGTGCCAGCACGGAGTGATGGAGTGCGAATTGAACGC
GTGGCACGCCTGCATACTGGAGCACCATGACATTGCCCAATCCCTCAAGC
TGATCGCCTGCATGATGAGGGGTAAGAAGAACAGGCTGGAAAAGTGCGCT
GACCACTATCAAATCGACGTGGGCGATGTCAAAAATTGCAAGAAAACGCG
ACAGGTGAACGACATTCTGAGGAAGTACGGCAAGGAAACGGCCAAGGTCT
CATTTCAGGGAGTGCCAGCCGTAGCTCTGGATAACGTTTATAACGCGGAT
CTATCAGCAAACTTAACTGATCATTTTGATGCCATTTTTTGCGCCAAGTA
TAAGGAAAAGTTCAATAAGCAGCTAAATAATTGTCAAGCAAGCTTTCTAG
ACC
BO07073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10157-PA | 624 | CG10157-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT2-RA | 712 | CG10157-RA | 73..694 | 16..637 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23679383..23679679 | 241..537 | 1485 | 100 | Plus |
3R | 32079331 | 3R | 23679093..23679258 | 76..241 | 830 | 100 | Plus |
3R | 32079331 | 3R | 23679732..23679837 | 532..637 | 515 | 99.1 | Plus |
3R | 32079331 | 3R | 23678967..23679027 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:26:48 has no hits.
BO07073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:30 Download gff for
BO07073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-PA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:16 Download gff for
BO07073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-PA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:52 Download gff for
BO07073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-RA | 73..702 | 16..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:23 Download gff for
BO07073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT2-RA | 73..702 | 16..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:23 Download gff for
BO07073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23678967..23679027 | 16..76 | 100 | -> | Plus |
3R | 23679094..23679258 | 77..241 | 100 | -> | Plus |
3R | 23679384..23679677 | 242..535 | 100 | -> | Plus |
3R | 23679736..23679845 | 536..645 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:52 Download gff for
BO07073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19504816..19504980 | 77..241 | 100 | -> | Plus |
arm_3R | 19504689..19504749 | 16..76 | 100 | -> | Plus |
arm_3R | 19505106..19505399 | 242..535 | 100 | -> | Plus |
arm_3R | 19505458..19505567 | 536..645 | 96 | | Plus |
BO07073.complete Sequence
655 bp (655 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630650
> BO07073.complete
GAAGTTATCAGTCGACATGAGGGCGGCTGTCTTTGTGTGTCTGCTGCTGG
GATGGGTGGGCGTGGCCACGCCAAGGCGTTTGCGCGGACCGCAAGCTGAC
CGACTGGCGATCACCCTGTACTACGAAGCATTGTGTCCCTACTGCATGGA
GTTCGTGACCACGCAGCTCAATCCCTCGATGGTCCGTCAGGATCGACTTC
CATTCACTGATCTTACGCTGGTTCCTTATGGAAATGCCAGGACGAACGAT
GACGGAAATGTGGAGTGCCAGCACGGAGTGATGGAGTGCGAATTGAACGC
GTGGCACGCCTGCATACTGGAGCACCATGACATTGCCCAATCCCTCAAGC
TGATCGCCTGCATGATGAGGGGTAAGAAGAACAGGCTGGAAAAGTGCGCT
GACCACTATCAAATCGACGTGGGCGATGTCAAAAATTGCAAGAAAACGCG
ACAGGTGAACGACATTCTGAGGAAGTACGGCAAGGAAACGGCCAAGGTCT
CATTTCAGGGAGTGCCAGCCGTAGCTCTGGATAACGTTTATAACGCGGAT
CTATCAGCAAACTTAACTGATCATTTTGATGCCATTTTTTGCGCCAAGTA
TAAGGAAAAGTTCAATAAGCAGCTAAATAATTGTCAAGCAAGCTTTCTAG
ACCAT
BO07073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT2-RA | 624 | CG10157-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT2-RA | 712 | CG10157-RA | 73..694 | 16..637 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23679383..23679679 | 241..537 | 1485 | 100 | Plus |
3R | 32079331 | 3R | 23679093..23679258 | 76..241 | 830 | 100 | Plus |
3R | 32079331 | 3R | 23679732..23679837 | 532..637 | 515 | 99.1 | Plus |
3R | 32079331 | 3R | 23678967..23679027 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:54 has no hits.
BO07073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:45:09 Download gff for
BO07073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-RA | 1..624 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:04 Download gff for
BO07073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-RA | 77..706 | 16..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:06 Download gff for
BO07073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-RA | 74..694 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:45:10 Download gff for
BO07073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10157-RA | 77..706 | 16..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:04 Download gff for
BO07073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT2-RA | 74..694 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:04 Download gff for
BO07073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23678968..23679027 | 17..76 | 100 | -> | Plus |
3R | 23679094..23679258 | 77..241 | 100 | -> | Plus |
3R | 23679384..23679677 | 242..535 | 100 | -> | Plus |
3R | 23679736..23679837 | 536..639 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:06 Download gff for
BO07073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19504690..19504749 | 17..76 | 100 | -> | Plus |
arm_3R | 19504816..19504980 | 77..241 | 100 | -> | Plus |
arm_3R | 19505106..19505399 | 242..535 | 100 | -> | Plus |
arm_3R | 19505458..19505559 | 536..639 | 98 | | Plus |
BO07073.pep Sequence
Translation from 16 to 655
> BO07073.pep
MRAAVFVCLLLGWVGVATPRRLRGPQADRLAITLYYEALCPYCMEFVTTQ
LNPSMVRQDRLPFTDLTLVPYGNARTNDDGNVECQHGVMECELNAWHACI
LEHHDIAQSLKLIACMMRGKKNRLEKCADHYQIDVGDVKNCKKTRQVNDI
LRKYGKETAKVSFQGVPAVALDNVYNADLSANLTDHFDAIFCAKYKEKFN
KQLNNCQASFLDH
BO07073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT2-PA | 207 | CG10157-PA | 1..207 | 1..207 | 1117 | 100 | Plus |
GILT3-PA | 216 | CG13822-PA | 11..214 | 7..208 | 385 | 38.6 | Plus |
CG41378-PD | 205 | CG41378-PD | 8..172 | 15..172 | 201 | 29.9 | Plus |
CG41378-PB | 228 | CG41378-PB | 21..195 | 5..172 | 197 | 28.2 | Plus |
CG41378-PC | 196 | CG41378-PC | 5..163 | 21..172 | 196 | 29.8 | Plus |