Clone Sequence Records
BO07074.3prime Sequence
880 bp (794 high quality bases) assembled on 2005-12-03
> BO07074.3prime
ATGGTCTAGAAAGCTTGCGGCAATCTCTTTGAGCGCTAGCAGTGATTGGC
GCAGATATTCATACTGCGTCTTGGCATGCTTGATCTCCAGCTCTGAGAGC
TCGACGAGGCTCTTCTTGAAAGCAGCTACCCGTCGGTTGCGGAAACCGAT
CAACTCCTCCTTTCCACATGCAGACATAGATTCGAATTTTTCACAGGCCT
CCGCCTGGGCAGTCTCGGCCGCATGAACATCCTTGTTTTTGGAGCGAGCC
TTCTCCAGGTTTCGATTGGCCGCTTCATAAGCAGCCAAACACCGCAGTCG
CCGGATAAGTAGAGCTTTGGCAGCGTCGCTATCCCGCTGATAGTAGCGCA
GAGTGTCGCCCAGCTTGAGATCTTGATCGCTAGCCACTCGGGTTTCCAGA
TTCTTGATCCTTTCAAATATCTCCGCTGTCTTGGCCACAAACGTCTCCAC
ATTTCCCTTTTCCGTAGTCGAGAGCTGCGTCAACGCATTCGAAATCTTCT
GATGCGAGTCGCCTACATCCTTGTGGCGTTGCGTCATTTTCTCCGTCCTG
AGTGCTGCCTCGCGCAAGTGGCCGTGGTACTCGGTAAGGAACTGCAGCTC
GTTCTCAAAGAAGTCATTTACATCCCGAACCGTGGCGCTCAACAAGATCT
CGTCTGTGGTCTTGCCCAGGGACTTGACAAAGCCGCCAAAGATGGCCATC
TTCTTGCGTGGCTTAGCGCACAGATCTTGGTCGTATTCCAGGAAAACCTT
CAAGTGCTGATCGACGCGAAAGACGGGATGACTAGCAAGGCGGCGCAGGA
AAACCTCGTGCATGGCCACCGTCTTCTTGAAGGTAGCTAGGTACTCAGCC
TCCAGCTCTGACTTCATCTTTTTGAACTCC
BO07074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8282-PA | 1350 | Snx6-RA | 486..1347 | 880..19 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx6-RA | 1803 | CG8282-RA | 599..1460 | 880..19 | 4310 | 100 | Minus |
Snx6-RB | 1821 | CG8282-RB | 599..1478 | 880..19 | 4120 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8219362..8219806 | 403..847 | 2225 | 100 | Plus |
2L | 23513712 | 2L | 8219115..8219301 | 219..405 | 935 | 100 | Plus |
2L | 23513712 | 2L | 8218570..8218680 | 110..220 | 555 | 100 | Plus |
2L | 23513712 | 2L | 8218414..8218506 | 19..111 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:34:07 has no hits.
BO07074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:31 Download gff for
BO07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-PA | 486..1350 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:17 Download gff for
BO07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8282-PA | 486..1350 | 16..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:21 Download gff for
BO07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 599..1460 | 19..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:59 Download gff for
BO07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 599..1460 | 19..880 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:59 Download gff for
BO07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8218414..8218504 | 19..109 | 100 | <- | Plus |
2L | 8218570..8218679 | 110..219 | 100 | <- | Plus |
2L | 8219116..8219298 | 220..402 | 100 | <- | Plus |
2L | 8219362..8219806 | 403..847 | 100 | <- | Plus |
2L | 8219870..8219902 | 848..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:21 Download gff for
BO07074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8218414..8218504 | 19..109 | 100 | <- | Plus |
arm_2L | 8218570..8218679 | 110..219 | 100 | <- | Plus |
arm_2L | 8219116..8219298 | 220..402 | 100 | <- | Plus |
arm_2L | 8219362..8219806 | 403..847 | 100 | <- | Plus |
arm_2L | 8219870..8219902 | 848..880 | 100 | | Plus |
BO07074.5prime Sequence
927 bp (834 high quality bases) assembled on 2005-12-03
> BO07074.5prime
GAAGTTATCAGTCGACATGATGGACGGCACGGATGACTCAAATCTGCTTA
ACAGCCCCTCCACCAACAATGGAGCCACAATGGAAATCGCCTCGCCAACA
AATCCACTTGCCACTCCACCAGCAACAGGCGGTGCACCCGCACCAAGTGG
AGCCACAAATGGCAGTGGATCCGCCACATCGCCGGATAGCTCCTCCTCAG
CCCCGGCCACGCCGGCAGTTCTAGGCGAGAACGCCCTGCATGTCGAGATC
TCCGATGCGCTCAGCGAAAAGGAGAAGGTCAAGTTCACAGTGCACACCCG
CACCACACTGCCGGGATTCTCAAAAAAGGACAATAACGTAGTGCGTCAGC
ACGAGGAGTTCGTCTGGCTACATGACCGTATTGAGGAGAACGACGACTAT
GCTGGCTACATTATTCCGCCCTGTCCACCTCGTCCGGACTTCGATGCCTC
CCGAGAGAAGCTGCAGCGTCTTGGCGAGGGCGAAGGCAACATGACCAAAG
AGGAGTTCAAAAAGATGAAGTCAGAGCTGGAGGCTGAGTACCTAGCTACC
TTCAAGAAGACGGTGGCCATGCACGAGGTTTTCCTGCGCCGCCTTGCTAG
TCATCCCGTCTTTCGCGTCGATCAGCACTTGAAGGTTTTCCTGGAATACG
ACCAAGATCTGTGCGCTAAGCCACGCAAGAAGATGGCCATCTTTGGCGGC
TTTGTCAAGTCCCTGGGCAAGACCACAGACGAGATCTTGTTGAGCGCCAC
GGTTCGGGATGTAAATGACTTCTTTGAGAACGAGCTGCAGTTCCTTACCG
AGTACCACGGCCACTTGCGCGAGGCAGCACTCAGGACGGAGAAAATGACG
CAACGCCACAAGGATGTANGCGACTCGCATCAGAAGATTTCGAATGCGTT
GACGCAGCTCTCGACTACNGAAAAGGG
BO07074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8282-PA | 1350 | Snx6-RA | 1..911 | 17..927 | 4517 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx6-RB | 1821 | CG8282-RB | 114..1024 | 17..927 | 4533 | 99.8 | Plus |
Snx6-RA | 1803 | CG8282-RA | 114..1024 | 17..927 | 4533 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8220045..8220435 | 412..22 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 8219414..8219806 | 927..535 | 1943 | 99.5 | Minus |
2L | 23513712 | 2L | 8219870..8219991 | 534..413 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:53:34 has no hits.
BO07074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:31 Download gff for
BO07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:19 Download gff for
BO07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8282-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:23 Download gff for
BO07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 114..1024 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:38 Download gff for
BO07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 114..1024 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:38 Download gff for
BO07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8220045..8220439 | 16..412 | 99 | | Minus |
2L | 8219414..8219806 | 535..927 | 99 | <- | Minus |
2L | 8219870..8219991 | 413..534 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:23 Download gff for
BO07074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8219414..8219806 | 535..927 | 99 | <- | Minus |
arm_2L | 8219870..8219991 | 413..534 | 100 | <- | Minus |
arm_2L | 8220045..8220439 | 16..412 | 99 | | Minus |
BO07074.complete Sequence
1381 bp (1381 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630651
> BO07074.complete
GAAGTTATCAGTCGACATGATGGACGGCACGGATGACTCAAATCTGCTTA
ACAGCCCCTCCACCAACAATGGAGCCACAATGGAAATCGCCTCGCCAACA
AATCCACTTGCCACTCCACCAGCAACAGGCGGTGCACCCGCACCAAGTGG
AGCCACAAATGGCAGTGGATCCGCCACATCGCCGGATAGCTCCTCCTCAG
CCCCGGCCACGCCGGCAGTTCTAGGCGAGAACGCCCTGCATGTCGAGATC
TCCGATGCGCTCAGCGAAAAGGAGAAGGTCAAGTTCACAGTGCACACCCG
CACCACACTGCCGGGATTCTCAAAAAAGGACAATAACGTAGTGCGTCAGC
ACGAGGAGTTCGTCTGGCTACATGACCGTATTGAGGAGAACGACGACTAT
GCTGGCTACATTATTCCGCCCTGTCCACCTCGTCCGGACTTCGATGCCTC
CCGAGAGAAGCTGCAGCGTCTTGGCGAGGGCGAAGGCAACATGACCAAAG
AGGAGTTCAAAAAGATGAAGTCAGAGCTGGAGGCTGAGTACCTAGCTACC
TTCAAGAAGACGGTGGCCATGCACGAGGTTTTCCTGCGCCGCCTTGCTAG
TCATCCCGTCTTTCGCGTCGATCAGCACTTGAAGGTTTTCCTGGAATACG
ACCAAGATCTGTGCGCTAAGCCACGCAAGAAGATGGCCATCTTTGGCGGC
TTTGTCAAGTCCCTGGGCAAGACCACAGACGAGATCTTGTTGAGCGCCAC
GGTTCGGGATGTAAATGACTTCTTTGAGAACGAGCTGCAGTTCCTTACCG
AGTACCACGGCCACTTGCGCGAGGCAGCACTCAGGACGGAGAAAATGACG
CAACGCCACAAGGATGTAGGCGACTCGCATCAGAAGATTTCGAATGCGTT
GACGCAGCTCTCGACTACGGAAAAGGGAAATGTGGAGACGTTTGTGGCCA
AGACAGCGGAGATATTTGAAAGGATCAAGAATCTGGAAACCCGAGTGGCT
AGCGATCAAGATCTCAAGCTGGGCGACACTCTGCGCTACTATCAGCGGGA
TAGCGACGCTGCCAAAGCTCTACTTATCCGGCGACTGCGGTGTTTGGCTG
CTTATGAAGCGGCCAATCGAAACCTGGAGAAGGCTCGCTCCAAAAACAAG
GATGTTCATGCGGCCGAGACTGCCCAGGCGGAGGCCTGTGAAAAATTCGA
ATCTATGTCTGCATGTGGAAAGGAGGAGTTGATCGGTTTCCGCAACCGAC
GGGTAGCTGCTTTCAAGAAGAGCCTCGTCGAGCTCTCAGAGCTGGAGATC
AAGCATGCCAAGACGCAGTATGAATATCTGCGCCAATCACTGCTAGCGCT
CAAAGAGATTGCCGCAAGCTTTCTAGACCAT
BO07074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx6-RA | 1350 | CG8282-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Snx6-RB | 1368 | CG8282-PB | 1..1365 | 17..1363 | 6520 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx6-RA | 1803 | CG8282-RA | 114..1460 | 17..1363 | 6735 | 100 | Plus |
Snx6-RB | 1821 | CG8282-RB | 114..1478 | 17..1363 | 6520 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8219362..8219806 | 979..535 | 2225 | 100 | Minus |
2L | 23513712 | 2L | 8220045..8220435 | 412..22 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 8219115..8219301 | 1163..977 | 935 | 100 | Minus |
2L | 23513712 | 2L | 8219870..8219991 | 534..413 | 610 | 100 | Minus |
2L | 23513712 | 2L | 8218570..8218680 | 1272..1162 | 555 | 100 | Minus |
2L | 23513712 | 2L | 8218414..8218506 | 1363..1271 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:38:35 has no hits.
BO07074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:22 Download gff for
BO07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 1..1350 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:53 Download gff for
BO07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 110..1456 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:03 Download gff for
BO07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 114..1460 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:22 Download gff for
BO07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 110..1456 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:46 Download gff for
BO07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snx6-RA | 114..1460 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:46 Download gff for
BO07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8219116..8219298 | 980..1162 | 100 | <- | Minus |
2L | 8218411..8218504 | 1273..1365 | 97 | <- | Minus |
2L | 8218570..8218679 | 1163..1272 | 100 | <- | Minus |
2L | 8219362..8219806 | 535..979 | 100 | <- | Minus |
2L | 8219870..8219991 | 413..534 | 100 | <- | Minus |
2L | 8220045..8220438 | 17..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:03 Download gff for
BO07074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8218411..8218504 | 1273..1365 | 97 | <- | Minus |
arm_2L | 8218570..8218679 | 1163..1272 | 100 | <- | Minus |
arm_2L | 8219116..8219298 | 980..1162 | 100 | <- | Minus |
arm_2L | 8219362..8219806 | 535..979 | 100 | <- | Minus |
arm_2L | 8219870..8219991 | 413..534 | 100 | <- | Minus |
arm_2L | 8220045..8220438 | 17..412 | 99 | | Minus |
BO07074.pep Sequence
Translation from 16 to 1381
> BO07074.pep
MMDGTDDSNLLNSPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGS
GSATSPDSSSSAPATPAVLGENALHVEISDALSEKEKVKFTVHTRTTLPG
FSKKDNNVVRQHEEFVWLHDRIEENDDYAGYIIPPCPPRPDFDASREKLQ
RLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEVFLRRLASHPVFR
VDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRDVN
DFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDSHQKISNALTQLST
TEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYYQRDSDAAK
ALLIRRLRCLAAYEAANRNLEKARSKNKDVHAAETAQAEACEKFESMSAC
GKEELIGFRNRRVAAFKKSLVELSELEIKHAKTQYEYLRQSLLALKEIAA
SFLDH
BO07074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snx6-PA | 449 | CG8282-PA | 1..449 | 1..449 | 2295 | 100 | Plus |
Snx6-PB | 455 | CG8282-PB | 1..455 | 1..449 | 2278 | 98.7 | Plus |
Snx1-PB | 456 | CG2774-PB | 33..444 | 35..437 | 224 | 21.1 | Plus |
Snx1-PA | 458 | CG2774-PA | 33..446 | 35..437 | 222 | 21 | Plus |