Clone BO07074 Report

Search the DGRC for BO07074

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptSnx6-RA
Protein status:BO07074.pep: validated full length
Sequenced Size:1381

Clone Sequence Records

BO07074.3prime Sequence

880 bp (794 high quality bases) assembled on 2005-12-03

> BO07074.3prime
ATGGTCTAGAAAGCTTGCGGCAATCTCTTTGAGCGCTAGCAGTGATTGGC
GCAGATATTCATACTGCGTCTTGGCATGCTTGATCTCCAGCTCTGAGAGC
TCGACGAGGCTCTTCTTGAAAGCAGCTACCCGTCGGTTGCGGAAACCGAT
CAACTCCTCCTTTCCACATGCAGACATAGATTCGAATTTTTCACAGGCCT
CCGCCTGGGCAGTCTCGGCCGCATGAACATCCTTGTTTTTGGAGCGAGCC
TTCTCCAGGTTTCGATTGGCCGCTTCATAAGCAGCCAAACACCGCAGTCG
CCGGATAAGTAGAGCTTTGGCAGCGTCGCTATCCCGCTGATAGTAGCGCA
GAGTGTCGCCCAGCTTGAGATCTTGATCGCTAGCCACTCGGGTTTCCAGA
TTCTTGATCCTTTCAAATATCTCCGCTGTCTTGGCCACAAACGTCTCCAC
ATTTCCCTTTTCCGTAGTCGAGAGCTGCGTCAACGCATTCGAAATCTTCT
GATGCGAGTCGCCTACATCCTTGTGGCGTTGCGTCATTTTCTCCGTCCTG
AGTGCTGCCTCGCGCAAGTGGCCGTGGTACTCGGTAAGGAACTGCAGCTC
GTTCTCAAAGAAGTCATTTACATCCCGAACCGTGGCGCTCAACAAGATCT
CGTCTGTGGTCTTGCCCAGGGACTTGACAAAGCCGCCAAAGATGGCCATC
TTCTTGCGTGGCTTAGCGCACAGATCTTGGTCGTATTCCAGGAAAACCTT
CAAGTGCTGATCGACGCGAAAGACGGGATGACTAGCAAGGCGGCGCAGGA
AAACCTCGTGCATGGCCACCGTCTTCTTGAAGGTAGCTAGGTACTCAGCC
TCCAGCTCTGACTTCATCTTTTTGAACTCC

BO07074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8282-PA 1350 Snx6-RA 486..1347 880..19 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-RA 1803 CG8282-RA 599..1460 880..19 4310 100 Minus
Snx6-RB 1821 CG8282-RB 599..1478 880..19 4120 98 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8219362..8219806 403..847 2225 100 Plus
2L 23513712 2L 8219115..8219301 219..405 935 100 Plus
2L 23513712 2L 8218570..8218680 110..220 555 100 Plus
2L 23513712 2L 8218414..8218506 19..111 465 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:34:07 has no hits.

BO07074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:31 Download gff for BO07074.3prime
Subject Subject Range Query Range Percent Splice Strand
Snx6-PA 486..1350 16..880 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:17 Download gff for BO07074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8282-PA 486..1350 16..880 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:21 Download gff for BO07074.3prime
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 599..1460 19..880 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:59 Download gff for BO07074.3prime
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 599..1460 19..880 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:59 Download gff for BO07074.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8218414..8218504 19..109 100 <- Plus
2L 8218570..8218679 110..219 100 <- Plus
2L 8219116..8219298 220..402 100 <- Plus
2L 8219362..8219806 403..847 100 <- Plus
2L 8219870..8219902 848..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:21 Download gff for BO07074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8218414..8218504 19..109 100 <- Plus
arm_2L 8218570..8218679 110..219 100 <- Plus
arm_2L 8219116..8219298 220..402 100 <- Plus
arm_2L 8219362..8219806 403..847 100 <- Plus
arm_2L 8219870..8219902 848..880 100   Plus

BO07074.5prime Sequence

927 bp (834 high quality bases) assembled on 2005-12-03

> BO07074.5prime
GAAGTTATCAGTCGACATGATGGACGGCACGGATGACTCAAATCTGCTTA
ACAGCCCCTCCACCAACAATGGAGCCACAATGGAAATCGCCTCGCCAACA
AATCCACTTGCCACTCCACCAGCAACAGGCGGTGCACCCGCACCAAGTGG
AGCCACAAATGGCAGTGGATCCGCCACATCGCCGGATAGCTCCTCCTCAG
CCCCGGCCACGCCGGCAGTTCTAGGCGAGAACGCCCTGCATGTCGAGATC
TCCGATGCGCTCAGCGAAAAGGAGAAGGTCAAGTTCACAGTGCACACCCG
CACCACACTGCCGGGATTCTCAAAAAAGGACAATAACGTAGTGCGTCAGC
ACGAGGAGTTCGTCTGGCTACATGACCGTATTGAGGAGAACGACGACTAT
GCTGGCTACATTATTCCGCCCTGTCCACCTCGTCCGGACTTCGATGCCTC
CCGAGAGAAGCTGCAGCGTCTTGGCGAGGGCGAAGGCAACATGACCAAAG
AGGAGTTCAAAAAGATGAAGTCAGAGCTGGAGGCTGAGTACCTAGCTACC
TTCAAGAAGACGGTGGCCATGCACGAGGTTTTCCTGCGCCGCCTTGCTAG
TCATCCCGTCTTTCGCGTCGATCAGCACTTGAAGGTTTTCCTGGAATACG
ACCAAGATCTGTGCGCTAAGCCACGCAAGAAGATGGCCATCTTTGGCGGC
TTTGTCAAGTCCCTGGGCAAGACCACAGACGAGATCTTGTTGAGCGCCAC
GGTTCGGGATGTAAATGACTTCTTTGAGAACGAGCTGCAGTTCCTTACCG
AGTACCACGGCCACTTGCGCGAGGCAGCACTCAGGACGGAGAAAATGACG
CAACGCCACAAGGATGTANGCGACTCGCATCAGAAGATTTCGAATGCGTT
GACGCAGCTCTCGACTACNGAAAAGGG

BO07074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8282-PA 1350 Snx6-RA 1..911 17..927 4517 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-RB 1821 CG8282-RB 114..1024 17..927 4533 99.8 Plus
Snx6-RA 1803 CG8282-RA 114..1024 17..927 4533 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8220045..8220435 412..22 1955 100 Minus
2L 23513712 2L 8219414..8219806 927..535 1943 99.5 Minus
2L 23513712 2L 8219870..8219991 534..413 610 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:53:34 has no hits.

BO07074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:31 Download gff for BO07074.5prime
Subject Subject Range Query Range Percent Splice Strand
Snx6-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:19 Download gff for BO07074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8282-PA 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:23 Download gff for BO07074.5prime
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 114..1024 17..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:38 Download gff for BO07074.5prime
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 114..1024 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:38 Download gff for BO07074.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8220045..8220439 16..412 99   Minus
2L 8219414..8219806 535..927 99 <- Minus
2L 8219870..8219991 413..534 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:23 Download gff for BO07074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8219414..8219806 535..927 99 <- Minus
arm_2L 8219870..8219991 413..534 100 <- Minus
arm_2L 8220045..8220439 16..412 99   Minus

BO07074.complete Sequence

1381 bp (1381 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630651

> BO07074.complete
GAAGTTATCAGTCGACATGATGGACGGCACGGATGACTCAAATCTGCTTA
ACAGCCCCTCCACCAACAATGGAGCCACAATGGAAATCGCCTCGCCAACA
AATCCACTTGCCACTCCACCAGCAACAGGCGGTGCACCCGCACCAAGTGG
AGCCACAAATGGCAGTGGATCCGCCACATCGCCGGATAGCTCCTCCTCAG
CCCCGGCCACGCCGGCAGTTCTAGGCGAGAACGCCCTGCATGTCGAGATC
TCCGATGCGCTCAGCGAAAAGGAGAAGGTCAAGTTCACAGTGCACACCCG
CACCACACTGCCGGGATTCTCAAAAAAGGACAATAACGTAGTGCGTCAGC
ACGAGGAGTTCGTCTGGCTACATGACCGTATTGAGGAGAACGACGACTAT
GCTGGCTACATTATTCCGCCCTGTCCACCTCGTCCGGACTTCGATGCCTC
CCGAGAGAAGCTGCAGCGTCTTGGCGAGGGCGAAGGCAACATGACCAAAG
AGGAGTTCAAAAAGATGAAGTCAGAGCTGGAGGCTGAGTACCTAGCTACC
TTCAAGAAGACGGTGGCCATGCACGAGGTTTTCCTGCGCCGCCTTGCTAG
TCATCCCGTCTTTCGCGTCGATCAGCACTTGAAGGTTTTCCTGGAATACG
ACCAAGATCTGTGCGCTAAGCCACGCAAGAAGATGGCCATCTTTGGCGGC
TTTGTCAAGTCCCTGGGCAAGACCACAGACGAGATCTTGTTGAGCGCCAC
GGTTCGGGATGTAAATGACTTCTTTGAGAACGAGCTGCAGTTCCTTACCG
AGTACCACGGCCACTTGCGCGAGGCAGCACTCAGGACGGAGAAAATGACG
CAACGCCACAAGGATGTAGGCGACTCGCATCAGAAGATTTCGAATGCGTT
GACGCAGCTCTCGACTACGGAAAAGGGAAATGTGGAGACGTTTGTGGCCA
AGACAGCGGAGATATTTGAAAGGATCAAGAATCTGGAAACCCGAGTGGCT
AGCGATCAAGATCTCAAGCTGGGCGACACTCTGCGCTACTATCAGCGGGA
TAGCGACGCTGCCAAAGCTCTACTTATCCGGCGACTGCGGTGTTTGGCTG
CTTATGAAGCGGCCAATCGAAACCTGGAGAAGGCTCGCTCCAAAAACAAG
GATGTTCATGCGGCCGAGACTGCCCAGGCGGAGGCCTGTGAAAAATTCGA
ATCTATGTCTGCATGTGGAAAGGAGGAGTTGATCGGTTTCCGCAACCGAC
GGGTAGCTGCTTTCAAGAAGAGCCTCGTCGAGCTCTCAGAGCTGGAGATC
AAGCATGCCAAGACGCAGTATGAATATCTGCGCCAATCACTGCTAGCGCT
CAAAGAGATTGCCGCAAGCTTTCTAGACCAT

BO07074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-RA 1350 CG8282-PA 1..1347 17..1363 6735 100 Plus
Snx6-RB 1368 CG8282-PB 1..1365 17..1363 6520 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-RA 1803 CG8282-RA 114..1460 17..1363 6735 100 Plus
Snx6-RB 1821 CG8282-RB 114..1478 17..1363 6520 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8219362..8219806 979..535 2225 100 Minus
2L 23513712 2L 8220045..8220435 412..22 1955 100 Minus
2L 23513712 2L 8219115..8219301 1163..977 935 100 Minus
2L 23513712 2L 8219870..8219991 534..413 610 100 Minus
2L 23513712 2L 8218570..8218680 1272..1162 555 100 Minus
2L 23513712 2L 8218414..8218506 1363..1271 465 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:38:35 has no hits.

BO07074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:22 Download gff for BO07074.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 1..1350 17..1366 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:53 Download gff for BO07074.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 110..1456 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:03 Download gff for BO07074.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 114..1460 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:22 Download gff for BO07074.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 110..1456 17..1363 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:46 Download gff for BO07074.complete
Subject Subject Range Query Range Percent Splice Strand
Snx6-RA 114..1460 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:46 Download gff for BO07074.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8219116..8219298 980..1162 100 <- Minus
2L 8218411..8218504 1273..1365 97 <- Minus
2L 8218570..8218679 1163..1272 100 <- Minus
2L 8219362..8219806 535..979 100 <- Minus
2L 8219870..8219991 413..534 100 <- Minus
2L 8220045..8220438 17..412 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:03 Download gff for BO07074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8218411..8218504 1273..1365 97 <- Minus
arm_2L 8218570..8218679 1163..1272 100 <- Minus
arm_2L 8219116..8219298 980..1162 100 <- Minus
arm_2L 8219362..8219806 535..979 100 <- Minus
arm_2L 8219870..8219991 413..534 100 <- Minus
arm_2L 8220045..8220438 17..412 99   Minus

BO07074.pep Sequence

Translation from 16 to 1381

> BO07074.pep
MMDGTDDSNLLNSPSTNNGATMEIASPTNPLATPPATGGAPAPSGATNGS
GSATSPDSSSSAPATPAVLGENALHVEISDALSEKEKVKFTVHTRTTLPG
FSKKDNNVVRQHEEFVWLHDRIEENDDYAGYIIPPCPPRPDFDASREKLQ
RLGEGEGNMTKEEFKKMKSELEAEYLATFKKTVAMHEVFLRRLASHPVFR
VDQHLKVFLEYDQDLCAKPRKKMAIFGGFVKSLGKTTDEILLSATVRDVN
DFFENELQFLTEYHGHLREAALRTEKMTQRHKDVGDSHQKISNALTQLST
TEKGNVETFVAKTAEIFERIKNLETRVASDQDLKLGDTLRYYQRDSDAAK
ALLIRRLRCLAAYEAANRNLEKARSKNKDVHAAETAQAEACEKFESMSAC
GKEELIGFRNRRVAAFKKSLVELSELEIKHAKTQYEYLRQSLLALKEIAA
SFLDH

BO07074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Snx6-PA 449 CG8282-PA 1..449 1..449 2295 100 Plus
Snx6-PB 455 CG8282-PB 1..455 1..449 2278 98.7 Plus
Snx1-PB 456 CG2774-PB 33..444 35..437 224 21.1 Plus
Snx1-PA 458 CG2774-PA 33..446 35..437 222 21 Plus