Clone Sequence Records
BO07076.3prime Sequence
928 bp (789 high quality bases) assembled on 2005-12-03
> BO07076.3prime
ATGGTCTAGAAAGCTTGCAAATCTTGCCCTTTTAACAAACGATTTACCAC
CATTCTCTTGTGCCGGGCGCTTGTTAAATGGTTTTTTACCAAAGTTTGGC
TTAGTGTCCTTTTGGAACTTCCGCGGGGCGCGGGTCTGACCAATAGCTAA
GCGTTTCTTTAACAATCTATGCTTCAGCAGAGAGTTTGGCTCAATAAATA
TAGGGGCGTTGTTTACAATGCTTTCATTAGCCAAGAAAGATTTGCAGAAA
CCCTCATCGTCCTTGAACTTTACTACCGCTTTTTGGCCCAACATTATGAT
GCTTTCGATTTCGCCGCTATCGTTAAACACTTTCCGCAGGTCGGCTTCAG
TAGCATCTGAAGTCAAGTTCGTCACAAGAATGGCCCTCCCCGAGGTGCTG
CGTTCGAATCGGTGAAGCTTCCACTCAAACTTATTAACAGTCTTTCCGTC
GAGTTGTGCTAAAGCCTTCGTGGCGGCATCCGACTGCTTGAACGTGACAA
AAGCTAAAACTGCCTTGCTGCACACAACGTCGATTTCTTCAACATCACCA
AATTTTTTGAATATCTTTTCTAGAGCGTCGGAGCTGTAAGACTCGTGTTT
GCCCACATTTTCGACAACCAAGGTAAGTTCACTGGTACGTGAAATCGATT
CTTGTGAGATCCGACGAACCGTTATAAAGCGAGAAAACAGCTCAGTGCTA
TGCAGTTTAAGAGCCTTCGGTATGTCATCGACCGACGCCAAACGTACAAA
AGCTCTGGGCATGAGGCGGTTACTGGATATAGTCACCGCCTCCACGGGAG
CTACCTTCTCAAAAAAGGTTTTTAAGTCGTCCTTGGTAATATTAGGTCCA
ATCAGGCCAACCACCACCGTGCGTTCGTTTGTCTCTTCCCTTATTTCTCG
TTGGGAACAGACAAAACATTGTCTCCAA
BO07076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2050-PA | 1629 | mod-RA | 766..1626 | 879..19 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 831..1741 | 928..19 | 4455 | 99.5 | Minus |
| mod-RA | 2287 | CG2050-RA | 1164..2074 | 928..19 | 4455 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053785..32054357 | 928..357 | 2690 | 99.1 | Minus |
| 3R | 32079331 | 3R | 32054422..32054761 | 358..19 | 1700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:08:11 has no hits.
BO07076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:08:35 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:22 Download gff for
BO07076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2050-PA | 718..1629 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:50 Download gff for
BO07076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 1166..2082 | 11..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:32 Download gff for
BO07076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 1166..2082 | 11..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:32 Download gff for
BO07076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32053787..32054357 | 357..926 | 99 | -> | Minus |
| 3R | 32054424..32054769 | 11..356 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:50 Download gff for
BO07076.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27879509..27880079 | 357..926 | 99 | -> | Minus |
| arm_3R | 27880146..27880491 | 11..356 | 98 | | Minus |
BO07076.5prime Sequence
902 bp (773 high quality bases) assembled on 2005-12-03
> BO07076.5prime
GAAGTTATCAGTCGACATGGCCCAAAAGAAAGCCGTCACCGTCAAAGGAA
AAAAAGCTACGAATGGAGAGGAAAAGCCTTTGGCCAAACGGGTAACCAAG
TCCACAAAGGTACAGGAAGAGGAGACAGTAGTCCCCCAATCGCCTTCCAA
AAAATCCAGAAAACAGCCTGTTAAAGAAGTGCCGCAGTTCAGTGAAGAGG
ACGAGTCTGATGTGGAGGAGCAAAATGACGAGCAGCCAGGGGACGACAGC
GACTTTGAGACCGAAGAGGCAGCGGGCTTAATTGACGACGAGGCTGAGGA
AGATGAAGAGTACAATAGTGACGATGAGGAAGATGATGATGACGATGAGT
TGGAGCCTGGTGAGGTTTCCAAAAGTGAAGGCGCGGATGAGGTAGATGAA
TCCGATGATGATGAAGAAGCGCCTGTAGAGAAGCCAGTTTCCAAGAAATC
AGAAAAAGCCAACTCTGAAAAGTCCGAAGAAAATAGAGGAATTCCAAAAG
TAAAGGTTGGCAAGATTCCGCTGGGAACGCCAAAAAACCAGATCGTTTTT
GTCACAAACCTACCAAACGAGTATCTCCACAAGGACTTGGTCGCATTGTT
CGCCAAGTTCGGACGACTTTCCGCTTTGCAGCGTTTCACTAATTTGAATG
GCAATAAATCAGTTCTCATTGCCTTTGATACGTCAACTGGAGCAGAAGCT
GTTCTGCAGGCTAAGCCTAAAGCGTTAACCCTTGGAGACAATGTTTTGTC
TGTGTCCCAACCGAGAAATAAGGAAGAGAACAACGAACGCACGGTGGTGG
TTGGCCTGATTGGACCTAATATTACCAAGGACGACTTAAAAACCTTTTTT
GAGAAGGTAGCTCCCGTGGAGGCGGTGACTATATCCAGTAACCGCCTCAT
GC
BO07076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2050-PA | 1629 | mod-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 116..1001 | 17..902 | 4430 | 100 | Plus |
| mod-RA | 2287 | CG2050-RA | 449..1334 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053622..32053955 | 569..902 | 1670 | 100 | Plus |
| 3R | 32079331 | 3R | 32053240..32053555 | 254..569 | 1565 | 99.7 | Plus |
| 3R | 32079331 | 3R | 32052735..32052977 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:59:48 has no hits.
BO07076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 03:08:36 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:24 Download gff for
BO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2050-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:41:52 Download gff for
BO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 443..1334 | 11..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:07 Download gff for
BO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 443..1334 | 11..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:07 Download gff for
BO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32052729..32052977 | 11..259 | 99 | -> | Plus |
| 3R | 32053246..32053555 | 260..569 | 100 | -> | Plus |
| 3R | 32053623..32053955 | 570..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:41:52 Download gff for
BO07076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27878451..27878699 | 11..259 | 99 | -> | Plus |
| arm_3R | 27878968..27879277 | 260..569 | 100 | -> | Plus |
| arm_3R | 27879345..27879677 | 570..902 | 100 | | Plus |
BO07076.complete Sequence
1660 bp (1660 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ630653
> BO07076.complete
GAAGTTATCAGTCGACATGGCCCAAAAGAAAGCCGTCACCGTCAAAGGAA
AAAAAGCTACGAATGGAGAGGAAAAGCCTTTGGCCAAACGGGTAACCAAG
TCCACAAAGGTACAGGAAGAGGAGACAGTAGTCCCCCAATCGCCTTCCAA
AAAATCCAGAAAACAGCCTGTTAAAGAAGTGCCGCAGTTCAGTGAAGAGG
ACGAGTCTGATGTGGAGGAGCAAAATGACGAGCAGCCAGGGGACGACAGC
GACTTTGAGACCGAAGAGGCAGCGGGCTTAATTGACGACGAGGCTGAGGA
AGATGAAGAGTACAATAGTGACGATGAGGAAGATGATGATGACGATGAGT
TGGAGCCTGGTGAGGTTTCCAAAAGTGAAGGCGCGGATGAGGTAGATGAA
TCCGATGATGATGAAGAAGCGCCTGTAGAGAAGCCAGTTTCCAAGAAATC
AGAAAAAGCCAACTCTGAAAAGTCCGAAGAAAATAGAGGAATTCCAAAAG
TAAAGGTTGGCAAGATTCCGCTGGGAACGCCAAAAAACCAGATCGTTTTT
GTCACAAACCTACCAAACGAGTATCTCCACAAGGACTTGGTCGCATTGTT
CGCCAAGTTCGGACGACTTTCCGCTTTGCAGCGTTTCACTAATTTGAATG
GCAATAAATCAGTTCTCATTGCCTTTGATACGTCAACTGGAGCAGAAGCT
GTTCTGCAGGCTAAGCCTAAAGCGTTAACCCTTGGAGACAATGTTTTGTC
TGTGTCCCAACCGAGAAATAAGGAAGAGAACAACGAACGCACGGTGGTGG
TTGGCCTGATTGGACCTAATATTACCAAGGACGACTTAAAAACCTTTTTT
GAGAAGGTAGCTCCCGTGGAGGCGGTGACTATATCCAGTAACCGCCTCAT
GCCCAGAGCTTTTGTACGTTTGGCGTCGGTCGATGACATACCGAAGGCTC
TTAAACTGCATAGCACTGAGCTGTTTTCTCGCTTTATAACGGTTCGTCGG
ATCTCACAAGAATCGATTTCACGTACCAGTGAACTTACCTTGGTTGTCGA
AAATGTGGGCAAACACGAGTCTTACAGCTCCGACGCTCTAGAAAAGATAT
TCAAAAAATTTGGTGATGTTGAAGAAATCGACGTTGTGTGCAGCAAGGCA
GTTTTAGCTTTTGTCACGTTCAAGCAGTCGGATGCCGCCACGAAGGCTTT
AGCACAACTCGACGGAAAGACTGTTAATAAGTTTGAGTGGAAGCTTCACC
GATTCGAACGCAGCACCTCGGGGAGGGCCATTCTTGTGACGAACTTGACT
TCAGATGCTACTGAAGCCGACCTGCGGAAAGTGTTTAACGATAGCGGCGA
AATCGAAAGCATCATAATGTTGGGCCAAAAAGCGGTAGTAAAGTTCAAGG
ACGATGAGGGTTTCTGCAAATCTTTCTTGGCTAATGAAAGCATTGTAAAC
AACGCCCCTATATTTATTGAGCCAAACTCTCTGCTGAAGCATAGATTGTT
AAAGAAACGCTTAGCTATTGGTCAGACCCGCGCCCCGCGGAAGTTCCAAA
AGGACACTAAGCCAAACTTTGGTAAAAAACCATTTAACAAGCGCCCGGCA
CAAGAGAATGGTGGTAAATCGTTTGTTAAAAGGGCAAGATTTGCAAGCTT
TCTAGACCAT
BO07076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1629 | CG2050-PC | 1..1626 | 17..1642 | 8130 | 100 | Plus |
| mod-RA | 1629 | CG2050-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 116..1741 | 17..1642 | 8130 | 100 | Plus |
| mod-RA | 2287 | CG2050-RA | 449..2074 | 17..1642 | 8130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053622..32054357 | 569..1304 | 3680 | 100 | Plus |
| 3R | 32079331 | 3R | 32054422..32054761 | 1303..1642 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 32053240..32053555 | 254..569 | 1565 | 99.7 | Plus |
| 3R | 32079331 | 3R | 32052735..32052977 | 17..259 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:19:53 has no hits.
BO07076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:20 Download gff for
BO07076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 1..1629 | 17..1643 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:43 Download gff for
BO07076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 431..2070 | 11..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:31 Download gff for
BO07076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 449..2074 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:20 Download gff for
BO07076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 431..2070 | 11..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:04 Download gff for
BO07076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 449..2074 | 17..1644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:04 Download gff for
BO07076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32054424..32054761 | 1305..1644 | 99 | | Plus |
| 3R | 32052735..32052977 | 17..259 | 100 | -> | Plus |
| 3R | 32053246..32053555 | 260..569 | 100 | -> | Plus |
| 3R | 32053623..32054357 | 570..1304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:31 Download gff for
BO07076.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27878457..27878699 | 17..259 | 100 | -> | Plus |
| arm_3R | 27878968..27879277 | 260..569 | 100 | -> | Plus |
| arm_3R | 27879345..27880079 | 570..1304 | 100 | -> | Plus |
| arm_3R | 27880146..27880483 | 1305..1644 | 99 | | Plus |
BO07076.pep Sequence
Translation from 16 to 1660
> BO07076.pep
MAQKKAVTVKGKKATNGEEKPLAKRVTKSTKVQEEETVVPQSPSKKSRKQ
PVKEVPQFSEEDESDVEEQNDEQPGDDSDFETEEAAGLIDDEAEEDEEYN
SDDEEDDDDDELEPGEVSKSEGADEVDESDDDEEAPVEKPVSKKSEKANS
EKSEENRGIPKVKVGKIPLGTPKNQIVFVTNLPNEYLHKDLVALFAKFGR
LSALQRFTNLNGNKSVLIAFDTSTGAEAVLQAKPKALTLGDNVLSVSQPR
NKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTISSNRLMPRAFV
RLASVDDIPKALKLHSTELFSRFITVRRISQESISRTSELTLVVENVGKH
ESYSSDALEKIFKKFGDVEEIDVVCSKAVLAFVTFKQSDAATKALAQLDG
KTVNKFEWKLHRFERSTSGRAILVTNLTSDATEADLRKVFNDSGEIESII
MLGQKAVVKFKDDEGFCKSFLANESIVNNAPIFIEPNSLLKHRLLKKRLA
IGQTRAPRKFQKDTKPNFGKKPFNKRPAQENGGKSFVKRARFASFLDH
BO07076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-PC | 542 | CG2050-PC | 1..542 | 1..542 | 2725 | 100 | Plus |
| mod-PA | 542 | CG2050-PA | 1..542 | 1..542 | 2725 | 100 | Plus |
