Clone Sequence Records
BO07079.3prime Sequence
889 bp (860 high quality bases) assembled on 2005-12-03
> BO07079.3prime
ATGGTCTAGAAAGCTTGCGTAGAGCCAGATCTCCTCCAGAATCCCGTTGT
CTAGCTGCTCGGCGGGCAGGGCTTTCAGTGTGCGCAGCGTCTCCATGTAG
AAGGTCAGCTCTGATGTCACCACCCCGTGCTGCGGACCCCCATTGTTGTT
CACATTCAACTTGAGCAGTTGTTCCCGCAGCTTGTCTTTAAAGTTTCGAT
GAACAACGCCGTAGATTTCGTGTATCTGTGCCTCCGGCAGCACACCGGCG
ATGGCCTCGTGAAGTTTCACCAGGTGACGCGAGATGTGACGGAATGTCTG
AGAAGGTATAGGTGGTCTGGCTTCCCAGGCATCCAGTTGAGCTGCCAATC
TCTCGGATACAATTCCGTGTATTTTATTCTCGATCTCCTTGATGTGACCC
TGGTAGTCCCGCTCGATAGTTTCGTATCCGCTCATCGCTTGGAAATGCTC
TTTCAGCTTGGGCAGTAGCCATAGAACTAGTTGCAGTGCTCGCGAAACCA
GAGCCAGGTTGGTGCTCGTTATGGTTTTTAGCCCAGCAACTCGCATTGCT
CCTGCTCCGATAATTAGTTGGCAGCTTCTTGAGTTGAAGCAGCGCAGCAG
GTCCACCACATTCCTGGCGTGATAGCTGGCTAACAATGGCAGCCGATGTG
CACTACAACCGTACTCATACAACATTCGGATGAGCATTAGCGAAGCGCTG
ACCAACGTGTACGGTTGTTTGCCTTCCACCAAGAGCACTGGGTTGCCTGC
TCCATTGCTTATCAGATTGCCCATCTCCGGTTTGGCATAGTCCCCGGCGG
CCATACGTTCGATTATTCTCTGAAATTCGTGCGGAATGTCTACTTGGCGC
CAGCGCTCCTGATCCCAGAGTAAGGACAACTTCTGCTTT
BO07079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3766-PA | 2823 | scat-RA | 1950..2820 | 889..19 | 4305 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scat-RA | 3558 | CG3766-RA | 2259..3129 | 889..19 | 4325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9434042..9434912 | 889..19 | 4325 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:25:42 has no hits.
BO07079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:39 Download gff for
BO07079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-PA | 1950..2823 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:28 Download gff for
BO07079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3766-PA | 1950..2823 | 16..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:19 Download gff for
BO07079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 2259..3138 | 9..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:10 Download gff for
BO07079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 2259..3138 | 9..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:10 Download gff for
BO07079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9434042..9434921 | 9..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:19 Download gff for
BO07079.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9434042..9434921 | 9..889 | 99 | | Minus |
BO07079.5prime Sequence
931 bp (844 high quality bases) assembled on 2005-12-03
> BO07079.5prime
GAAGTTATCAGTCGACATGGCCACGACAAGATCCGCCGGAGGTGCCGCCA
CGTCCGTTGATACTGGACCGGCAGCAGGGAACTCGGGTATCAGAAAGCTA
TCGACGGCTAGCGTCGGTGGAATTGCCGGAGGAGTGGCGCCCAGCTGGCA
GAGCTGCTACTACTGCACCCGGGAGCACTTTAAAAGCATCAGCGACTTCG
TCAATCACCTGCGAAATCGTCACTGTACCCGGGAGGGTGGCTCATTTGTG
TGCCGCTATGGCTTCAATGGAGTATGTGCCTCGCTTCCACTGGACGGAGT
CTCAGATCGCGATTACGACGCCCATGTCGCCAAGTACCATGTCAATCAGC
ACACGCGCGAAATGCCTCCCGAATGGGGAGTCTACTCGGCGGCCCAAAAC
CTGCCAGCGGTGCTCAACGATCCCTCGCGAGGAAAGCAGAGTAATCTGTT
TACCAAAAAGTGGGGCGAGCATTTTGTGGAACGAAGTCATGTGCCCCCAT
CACCCCGATTGCCCGATATAACCCATGCGGATTTTACCGTGTATCTGGGC
AGCATAGGGAAGCGATATCGTTGGCATGAGCGGCGGCAGCAACAACTGGA
GCGTGATAAACCGCTGGAGAATGGAGCACAAGGAGCACCTGGACCGGGAA
CTGGTGGTCAGACACCAACACACTTGAGTTCTGTGCCCGAGATCTTTCTG
AAATCACAACTGCAGCTTCATCATCCGGCAACCTTTAAGCAGGTATTTCC
TAATTACATGCAAACATCGGCTTCCAGTCCGGAAAGTCATCAGCAAACTG
GTCGTCAGCTGCAGGAACAGCTGAGTCACTACCTGGACATGGTGGAAGTA
AAATAGCGCAACAGGTATCGCAGAAATCGGCTGCGTTCTTTCACGCCATG
ACCACGCAGCACGCTATTCTGGCTGAGATGG
BO07079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3766-PA | 2823 | scat-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG3766-PA | 2823 | scat-RA | 834..916 | 849..931 | 415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scat-RA | 3558 | CG3766-RA | 310..1225 | 17..931 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9432281..9433008 | 205..931 | 3590 | 99.9 | Plus |
| 2L | 23513712 | 2L | 9431714..9431901 | 17..204 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:36:34 has no hits.
BO07079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:40 Download gff for
BO07079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:29 Download gff for
BO07079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3766-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:02:55 Download gff for
BO07079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 305..1225 | 11..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:48 Download gff for
BO07079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 305..1225 | 11..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:48 Download gff for
BO07079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9431709..9431901 | 11..204 | 98 | -> | Plus |
| 2L | 9432281..9433008 | 205..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:02:55 Download gff for
BO07079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9431709..9431901 | 11..204 | 98 | -> | Plus |
| arm_2L | 9432281..9433008 | 205..931 | 99 | | Plus |
BO07079.complete Sequence
2854 bp assembled on 2008-08-14
GenBank Submission: FJ630654
> BO07079.complete
GAAGTTATCAGTCGACATGGCCACGACAAGATCCGCCGGAGGTGCCGCCA
CGTCCGTTGATACTGGACCGGCAGCAGGGAACTCGGGTATCAGAAAGCTA
TCGACGGCTAGCGTCGGTGGAATTGCCGGAGGAGTGGCGCCCAGCTGGCA
GAGCTGCTACTACTGCACCCGGGAGCACTTTAAAAGCATCAGCGACTTCG
TCAATCACCTGCGAAATCGTCACTGTACCCGGGAGGGTGGCTCATTTGTG
TGCCGCTATGGCTTCAATGGAGTATGTGCCTCGCTTCCACTGGACGGAGT
CTCAGATCGCGATTACGACGCCCATGTCGCCAAGTACCATGTCAATCAGC
ACACGCGCGAAATGCCTCCCGAATGGGGAGTCTACTCGGCGGCCCAAAAC
CTGCCAGCGGTGCTCAACGATCCCTCGCGAGGAAAGCAGAGTAATCTGTT
TACCAAAAAGTGGGGCGAGCATTTTGTGGAACGAAGTCATGTGCCCCCAT
CACCCCGATTGCCCGATATAACCCATGCGGATTTTACCGTGTATCTGGGC
AGCATAGGGAAGCGATATCGTTGGCATGAGCGGCGGCAGCAACAACTGGA
GCGTGATAAACCGCTGGAGAATGGAGCACAAGGAGCACCTGGACCGGGAA
CTGGTGGTCAGACACCAACACACTTGAGTTCTGTGCCCGAGATCTTTCTG
AAATCACAACTGCAGCTTCATCATCCGGCAACCTTTAAGCAGGTATTTCC
TAATTACATGCAAACATCGGCTTCCAGTCCGGAAAGTCATCAGCAAACTG
GTCGTCAGCTGCAGGAACAGCTGAGTCACTACCTGGACATGGTGGAAGTT
AAAATAGCGCAACAGGTATCGCAGAAATCGGCTGCGTTCTTTCACGCCAT
GACCACGCAGCACGCTATTCTGGCTGAGATGGAGCAGGCGGCCGACCAAG
TACGTCAGTTGCGGGCAGCACTGGCCGAACTCCACAGCCACTCGGTTGTA
GACAGCTTCAAAGTGCTGCGTTTCGCCCAAAGAAGACAGCACTATAACCT
CACACTAGACAAACTCCGACTGATGGCCACCGTACACAAGACGCAACCGA
TGCTGCAGCTCCTACTGGGCACCCAGGACTATGTGGCAGCCTTGGATTTG
ATAGGCACCACGCAGGAAATACTTTCCGCCGAACTCCTTGGCATTCACTG
CTTTAAGCATTTGCCTATGCAGCTTAGCGAAATGGAGAAGCTTATTGACA
AAATGCTTACCACGGAATTCGAGCGCTATGCTGCCGCCGATCTAAATCGA
CCGTTAACGGATGCCCTCCGGGAAACCGACAGCGTTTGCGCCGAGGAGGA
TAAACTCGTAGCTATTGTGATGGGCCTGTTGCGCAAGCAGAACTTCTCCT
TTGTCCAGGCTTACCAGCAAGAAGCAATCGCCACCATTCGAGCCATCATA
AAACAGCTGCTGATTGAGGTTTTGGCACGGAGTGACAGCGATCAGGAGAT
CAGTTTAACGGGCCACGGAGAGCAAGCCTTGGAGCTCACCCTTCCCGAAT
GGATTGCTCTGCTCCAGCGCTCCAGCCAAGCTTTGGTTTCCATTCTCGAA
AGAATTAAAACTGTAGTTGGTATAATGCAGCAAACAGCGGACGCAGCTGT
GGGAGCCCAGGACGCAGTGAATCTGATAGATTCAGAAGCCTTTTTGAGTC
CGGGACACCATGAGCAACTAAAAAACCAATTGCAACAACTGCTTCAAGCC
GTCTGCCACTACTGCCATGAGCGTTGTGCCAACATTGTGTCCCCTCAGAG
CCTGGAAAGGAGCTCAGCTAGCGAGCAAGAACTTTTCCAACTATCTGAGA
TTGTGGATCACTTTGGCGAGACAACAAGGAGCATTTGTGGAGTGGCCAGT
GTGCCCCTCCAGCTGGCCCTCAAAGTCCAAGCCTCCCGATATGCTCAACG
ATTCCATTCTGAACGAAAGCAGAAGTTGTCCTTACTCCTGGATCAGGAGC
GCTGGCGCCAAGTAGACATTCCGCACGAATTTCAGAGAATAATCGAACGT
ATGGCCGCCGGGGACTATGCCAAACCGGAGATGGGCAATCTGATAAGCAA
TGGAGCAGGCAACCCAGTGCTCTTGGTGGAAGGCAAACAACCGTACACGT
TGGTCAGCGCTTCGCTAATGCTCATCCGAATGTTGTATGAGTACGGTTGT
AGTGCACATCGGCTGCCATTGTTAGCCAGCTATCACGCCAGGAATGTGGT
GGACCTGCTGCGCTGCTTCAACTCAAGAAGCTGCCAACTAATTATCGGAG
CAGGAGCAATGCGAGTTGCTGGGCTAAAAACCATAACGAGCACCAACCTG
GCTCTGGTTTCGCGAGCACTGCAACTAGTTCTATGGCTACTGCCCAAGCT
GAAAGAGCATTTCCAAGCGATGAGCGGATACGAAACTATCGAGCGGGACT
ACCAGGGTCACATCAAGGAGATCGAGAATAAAATACACGGAATTGTATCC
GAGAGATTGGCAGCTCAACTGGATGCCTGGGAAGCCAGACCACCTATACC
TTCTCAGACATTCCGTCACATCTCGCGTCACCTGGTGAAACTTCACGAGG
CCATCGCCGGTGTGCTGCCGGAGGCACAGATACACGAAATCTACGGCGTT
GTTCATCGAAACTTTAAAGACAAGCTGCGGGAACAACTGCTCAAGTTGAA
TGTGAACAACAATGGGGGTCCGCAGCACGGGGTGGTGACATCAGAGCTGA
CCTTCTACATGGAGACGCTGCGCACACTGAAAGCCCTGCCCGCCGAGCAG
CTAGACAACGGGATTCTGGAGGAGATCTGGCTCTACGCAAGCTTTCTAGA
CCAT
BO07079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scat-RA | 2823 | CG3766-PA | 1..2820 | 17..2836 | 14100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scat-RA | 3558 | CG3766-RA | 310..3129 | 17..2836 | 14100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9432281..9434912 | 205..2836 | 13160 | 100 | Plus |
| 2L | 23513712 | 2L | 9431714..9431901 | 17..204 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:59:01 has no hits.
BO07079.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:14 Download gff for
BO07079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 303..3136 | 11..2846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:54 Download gff for
BO07079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 310..3129 | 17..2838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:04 Download gff for
BO07079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 308..3127 | 17..2838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:27 Download gff for
BO07079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scat-RA | 310..3129 | 17..2838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:27 Download gff for
BO07079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9431714..9431901 | 17..204 | 100 | -> | Plus |
| 2L | 9432281..9434912 | 205..2838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:54 Download gff for
BO07079.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9431714..9431901 | 17..204 | 100 | -> | Plus |
| arm_2L | 9432281..9434912 | 205..2838 | 99 | | Plus |
BO07079.pep Sequence
Translation from 16 to 2854
> BO07079.pep
MATTRSAGGAATSVDTGPAAGNSGIRKLSTASVGGIAGGVAPSWQSCYYC
TREHFKSISDFVNHLRNRHCTREGGSFVCRYGFNGVCASLPLDGVSDRDY
DAHVAKYHVNQHTREMPPEWGVYSAAQNLPAVLNDPSRGKQSNLFTKKWG
EHFVERSHVPPSPRLPDITHADFTVYLGSIGKRYRWHERRQQQLERDKPL
ENGAQGAPGPGTGGQTPTHLSSVPEIFLKSQLQLHHPATFKQVFPNYMQT
SASSPESHQQTGRQLQEQLSHYLDMVEVKIAQQVSQKSAAFFHAMTTQHA
ILAEMEQAADQVRQLRAALAELHSHSVVDSFKVLRFAQRRQHYNLTLDKL
RLMATVHKTQPMLQLLLGTQDYVAALDLIGTTQEILSAELLGIHCFKHLP
MQLSEMEKLIDKMLTTEFERYAAADLNRPLTDALRETDSVCAEEDKLVAI
VMGLLRKQNFSFVQAYQQEAIATIRAIIKQLLIEVLARSDSDQEISLTGH
GEQALELTLPEWIALLQRSSQALVSILERIKTVVGIMQQTADAAVGAQDA
VNLIDSEAFLSPGHHEQLKNQLQQLLQAVCHYCHERCANIVSPQSLERSS
ASEQELFQLSEIVDHFGETTRSICGVASVPLQLALKVQASRYAQRFHSER
KQKLSLLLDQERWRQVDIPHEFQRIIERMAAGDYAKPEMGNLISNGAGNP
VLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRC
FNSRSCQLIIGAGAMRVAGLKTITSTNLALVSRALQLVLWLLPKLKEHFQ
AMSGYETIERDYQGHIKEIENKIHGIVSERLAAQLDAWEARPPIPSQTFR
HISRHLVKLHEAIAGVLPEAQIHEIYGVVHRNFKDKLREQLLKLNVNNNG
GPQHGVVTSELTFYMETLRTLKALPAEQLDNGILEEIWLYASFLDH
BO07079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scat-PA | 940 | CG3766-PA | 1..940 | 1..940 | 4841 | 100 | Plus |
