Clone Sequence Records
BO07080.3prime Sequence
906 bp (830 high quality bases) assembled on 2005-12-03
> BO07080.3prime
ATGGTCTAGAAAGCTTGCTGTCTTTTTACCGCCCCGCTTGGCAGCAGGCT
TCTTGGCCTTCTTGGGAGTCGGTTCCTGAGCAGACTCCTCTTCGACCTCC
TCGGCGGCATCATCCTGCGGCGGCGTCTTAATCTTTTTGCTGCTGGTTGA
CGCCTTCGCCGGCAAGTTTTCCTTCTGCTCCTGCTTATCTACATTCTCGG
CTTCCTTGTCGGCATTATCCTGCGGCGGCGTCTTGTTCTTTTTGCTGCTG
GTTGACGCCTTCGCCGGCAAGTTTTCCTTCTGCTCCTGCTTATCTACATT
CTCGGCTTCCTTGTCGACATTATCCTGCGGCGGGGTCTTGTCCTTTTTAC
TGATGCTGCTGCTGCCAGACACCTTCACTGGAACATTCTCCTTCTGGTCC
TGTTTGTCCGCTTTGACCAAAAAGATTGCGTGCTGACCACCGCCAGATGC
GAGCAGCATGTGCTTCCCCTGCGTGTTCTTGCTGACAACCACGATCGGTT
CGAGCTCATCATCGCCGTCGCCAACGCCTAGTTGATTGTTGACACCGGAG
CCCCAGGAATACAGTTTGCCATCAATTGTAACGGCATAGGAACAGACTTC
GCCACATCCAACGGACACAATCTTTTCGGTCAGCTTCTTTACAATCGTTG
GCTTCTCCACAACATCCTTGACATCGCCCAGACCAAGCCGACCGTACTCC
GGACGACCCACTACGGAACACTTAAGGTCCGTTGTCAGGATGACAGTATG
GTGCTGACCGCCGGCAATATGTCGGATATCTTTGAGTTCCGTCTTGATGG
GCGTCAGTGCGAACTCCTTGCCCTTTGTCTCGTGGGGCAGCTGCTTGAAG
TTGTTAAGCCCTGTGGCCCAGATGACCTGTGTCTGTGACTCGCGCATGAA
TGTGCA
BO07080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10480-PA | 1644 | Bj1-RA | 754..1641 | 906..19 | 4415 | 99.8 | Minus |
| CG10480-PB | 1644 | Bj1-RB | 754..1641 | 906..19 | 4415 | 99.8 | Minus |
| CG10480-PC | 1644 | Bj1-RC | 754..1641 | 906..19 | 4415 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 878..1765 | 906..19 | 4425 | 99.9 | Minus |
| Rcc1-RB | 2144 | CG10480-RB | 937..1824 | 906..19 | 4425 | 99.9 | Minus |
| Rcc1-RA | 2365 | CG10480-RA | 1158..2045 | 906..19 | 4425 | 99.9 | Minus |
| Rcc1-RC | 2085 | CG10480-RC | 1432..1581 | 247..98 | 615 | 94 | Minus |
| Rcc1-RC | 2085 | CG10480-RC | 1537..1686 | 352..203 | 615 | 94 | Minus |
| Rcc1-RB | 2144 | CG10480-RB | 1491..1640 | 247..98 | 615 | 94 | Minus |
| Rcc1-RB | 2144 | CG10480-RB | 1596..1745 | 352..203 | 615 | 94 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5930582..5931469 | 19..906 | 4425 | 99.9 | Plus |
| 3L | 28110227 | 3L | 5930661..5930810 | 203..352 | 615 | 94 | Plus |
| 3L | 28110227 | 3L | 5930766..5930915 | 98..247 | 615 | 94 | Plus |
| X | 23542271 | X | 10900117..10900159 | 19..61 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:26:15 has no hits.
BO07080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:41 Download gff for
BO07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-PB | 755..1644 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:30 Download gff for
BO07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10480-PC | 755..1644 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:21 Download gff for
BO07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 1159..2052 | 11..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:27 Download gff for
BO07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 1159..2052 | 11..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:27 Download gff for
BO07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5930575..5931468 | 11..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:21 Download gff for
BO07080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5923675..5924568 | 11..905 | 99 | | Plus |
BO07080.5prime Sequence
849 bp (826 high quality bases) assembled on 2005-12-03
> BO07080.5prime
GAAGTTATCAGTCGACATGCCGCGCAGAAAGGCCCTGACTAATAACAACA
ATGCCGGCGAAGCGGAGCAGCAGCCACCGAAGGCGAAGCGCGCCAGAATC
GCTTTTCATCTGGAGCTGCCCAAGCGGAGGACCGTGCTCGGCAACGTGCT
AGTCTGCGGCAACGGCGATGTGGGCCAACTTGGTCTCGGCGAGGACATAC
TGGAGCGCAAGCGTCTCAGCCCTGTGGCGGGCATCCCGGATGCCGTGGAC
ATATCCGCCGGTGGCATGCACAACCTGGTGCTGACCAAGTCAGGGGACAT
TTACTCATTCGGTTGCAATGACGAAGGTGCTCTAGGCCGTGACACCAGCG
AGGATGGCAGCGAGTCAAAGCCGGATCTTATCGATTTGCCCGGCAAGGCT
CTGTGCATTTCGGCGGGAGACTCGCATTCCGCTTGTCTGCTGGAGGATGG
CCGTGTCTTCGCTTGGGGCTCGTTCCGGGACTCTCATGGCAACATGGGCC
TCACCATCGATGGTAACAAGCGTACGCCCATCGATCTGATGGAGGGCACT
GTCTGTTGTAGCATCGCGTCCGGCGCCGATCATTTGGTCATCCTGACCAC
TGCCGGAAAGGTCTTTACCGTGGGCTGCGCTGAGCAGGGACAACTCGGCC
GGCTGTCGGAGCGTTCCATCTCCGGAGAGGGTCGTCGTGGCAAACGCGAC
TTGCTGCGGCCCACCCAGCTCATCATCACGCGGGCCAAACCTTTTGAGGC
CATCTGGGCCACCAACTACTGCACATTCATGCGCGAGTCACAGACACAGG
TCATCTGGGCCACAGGGCTTAACAACTTCAAGCAGCTGGCCCACGAGAC
BO07080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10480-PA | 1644 | Bj1-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG10480-PB | 1644 | Bj1-RB | 1..833 | 17..849 | 4165 | 100 | Plus |
| CG10480-PC | 1644 | Bj1-RC | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 125..957 | 17..849 | 4165 | 100 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 184..1016 | 17..849 | 4165 | 100 | Plus |
| Rcc1-RA | 2365 | CG10480-RA | 405..1237 | 17..849 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5931616..5932281 | 682..17 | 3330 | 100 | Minus |
| 3L | 28110227 | 3L | 5931390..5931559 | 849..680 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:08:16 has no hits.
BO07080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:42 Download gff for
BO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-PB | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:32 Download gff for
BO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10480-PC | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:52 Download gff for
BO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1237 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:51 Download gff for
BO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..1237 | 17..849 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:51 Download gff for
BO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5931390..5931558 | 681..849 | 100 | <- | Minus |
| 3L | 5931618..5932281 | 17..680 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:52 Download gff for
BO07080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5924490..5924658 | 681..849 | 100 | <- | Minus |
| arm_3L | 5924718..5925381 | 17..680 | 100 | | Minus |
BO07080.complete Sequence
1675 bp assembled on 2008-08-14
GenBank Submission: FJ630655
> BO07080.complete
GAAGTTATCAGTCGACATGCCGCGCAGAAAGGCCCTGACTAATAACAACA
ATGCCGGCGAAGCGGAGCAGCAGCCACCGAAGGCGAAGCGCGCCAGAATC
GCTTTTCATCTGGAGCTGCCCAAGCGGAGGACCGTGCTCGGCAACGTGCT
AGTCTGCGGCAACGGCGATGTGGGCCAACTTGGTCTCGGCGAGGACATAC
TGGAGCGCAAGCGTCTCAGCCCTGTGGCGGGCATCCCGGATGCCGTGGAC
ATATCCGCCGGTGGCATGCACAACCTGGTGCTGACCAAGTCAGGGGACAT
TTACTCATTCGGTTGCAATGACGAAGGTGCTCTAGGCCGTGACACCAGCG
AGGATGGCAGCGAGTCAAAGCCGGATCTTATCGATTTGCCCGGCAAGGCT
CTGTGCATTTCGGCGGGAGACTCGCATTCCGCTTGTCTGCTGGAGGATGG
CCGTGTCTTCGCTTGGGGCTCGTTCCGGGACTCTCATGGCAACATGGGCC
TCACCATCGATGGTAACAAGCGTACGCCCATCGATCTGATGGAGGGCACT
GTCTGTTGTAGCATCGCGTCCGGCGCCGATCATTTGGTCATCCTGACCAC
TGCCGGAAAGGTCTTTACCGTGGGCTGCGCTGAGCAGGGACAACTCGGCC
GGCTGTCGGAGCGTTCCATCTCCGGAGAGGGTCGTCGTGGCAAACGCGAC
TTGCTGCGGCCCACCCAGCTCATCATCACGCGGGCCAAACCTTTTGAGGC
CATCTGGGCCACCAACTACTGCACATTCATGCGCGAGTCACAGACACAGG
TCATCTGGGCCACAGGGCTTAACAACTTCAAGCAGCTGGCCCACGAGACA
AAGGGCAAGGAGTTCGCACTGACGCCCATCAAGACGGAACTCAAAGATAT
CCGACATATTGCCGGCGGTCAGCACCATACTGTCATCCTGACAACGGACC
TTAAGTGTTCCGTAGTGGGTCGTCCGGAGTACGGTCGGCTTGGTCTGGGC
GATGTCAAGGATGTTGTGGAGAAGCCAACGATTGTAAAGAAGCTGACCGA
AAAGATTGTGTCCGTTGGATGTGGCGAAGTCTGTTCCTATGCCGTTACAA
TTGATGGCAAACTGTATTCCTGGGGCTCCGGTGTCAACAATCAACTAGGC
GTTGGCGACGGCGATGATGAGCTCGAACCGATCGTGGTTGTCAGCAAGAA
CACGCAGGGGAAGCACATGCTGCTCGCATCTGGCGGTGGTCAGCACGCAA
TCTTTTTGGTCAAAGCGGACAAACAGGACCAGAAGGAGAATGTTCCAGTG
AAGGTGTCTGGCAGCAGCAGCATCAGTAAAAAGGACAAGACCCCGCCGCA
GGATAATGTCGACAAGGAAGCCGAGAATGTAGATAAGCAGGAGCAGAAGG
AAAACTTGCCGGCGAAGGCGTCAACCAGCAGCAAAAAGAACAAGACGCCG
CCGCAGGATAATGCCGACAAGGAAGCCGAGAATGTAGATAAGCAGGAGCA
GAAGGAAAACTTGCCGGCGAAGGCGTCAACCAGCAGCAAAAAGATTAAGA
CGCCGCCGCAGGATGATGCCGCCGAGGAGGTCGAAGAGGAGTCTGCTCAG
GAACCGACTCCCAAGAAGGCCAAGAAGCCTGCTGCCAAGCGGGGCGGTAA
AAAGACAGCAAGCTTTCTAGACCAT
BO07080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 1644 | CG10480-PC | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| Rcc1-RB | 1644 | CG10480-PB | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| Rcc1-RA | 1644 | CG10480-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| Rcc1-RC | 1644 | CG10480-PC | 1308..1457 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RC | 1644 | CG10480-PC | 1413..1562 | 1324..1473 | 615 | 94 | Plus |
| Rcc1-RB | 1644 | CG10480-PB | 1308..1457 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RB | 1644 | CG10480-PB | 1413..1562 | 1324..1473 | 615 | 94 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-RC | 2085 | CG10480-RC | 125..1765 | 17..1657 | 8205 | 100 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 184..1824 | 17..1657 | 8205 | 100 | Plus |
| Rcc1-RA | 2365 | CG10480-RA | 405..2045 | 17..1657 | 8205 | 100 | Plus |
| Rcc1-RC | 2085 | CG10480-RC | 1432..1581 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RC | 2085 | CG10480-RC | 1537..1686 | 1324..1473 | 615 | 94 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 1491..1640 | 1429..1578 | 615 | 94 | Plus |
| Rcc1-RB | 2144 | CG10480-RB | 1596..1745 | 1324..1473 | 615 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5930582..5931559 | 1657..680 | 4890 | 100 | Minus |
| 3L | 28110227 | 3L | 5931616..5932281 | 682..17 | 3330 | 100 | Minus |
| 3L | 28110227 | 3L | 5930661..5930810 | 1473..1324 | 615 | 94 | Minus |
| 3L | 28110227 | 3L | 5930766..5930915 | 1578..1429 | 615 | 94 | Minus |
| X | 23542271 | X | 10900117..10900159 | 1657..1615 | 185 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:00:55 has no hits.
BO07080.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:09 Download gff for
BO07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-RC | 180..1827 | 17..1665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:06 Download gff for
BO07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..2045 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:38 Download gff for
BO07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bj1-RC | 180..1820 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:45 Download gff for
BO07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcc1-RA | 405..2045 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:45 Download gff for
BO07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5930580..5931558 | 681..1659 | 99 | <- | Minus |
| 3L | 5931618..5932281 | 17..680 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:06 Download gff for
BO07080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5923680..5924658 | 681..1659 | 99 | <- | Minus |
| arm_3L | 5924718..5925381 | 17..680 | 100 | | Minus |
BO07080.pep Sequence
Translation from 16 to 1675
> BO07080.pep
MPRRKALTNNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNG
DVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC
NDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAW
GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF
TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN
YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG
GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSV
GCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKH
MLLASGGGQHAIFLVKADKQDQKENVPVKVSGSSSISKKDKTPPQDNVDK
EAENVDKQEQKENLPAKASTSSKKNKTPPQDNADKEAENVDKQEQKENLP
AKASTSSKKIKTPPQDDAAEEVEEESAQEPTPKKAKKPAAKRGGKKTASF
LDH
BO07080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcc1-PC | 547 | CG10480-PC | 1..547 | 1..547 | 2838 | 100 | Plus |
| Rcc1-PB | 547 | CG10480-PB | 1..547 | 1..547 | 2838 | 100 | Plus |
| Rcc1-PA | 547 | CG10480-PA | 1..547 | 1..547 | 2838 | 100 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 4..350 | 42..392 | 249 | 28.2 | Plus |
| CG9153-PB | 1058 | CG9153-PB | 4..350 | 42..392 | 249 | 28.2 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 1..216 | 193..417 | 180 | 27.5 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 7..265 | 147..414 | 169 | 25.6 | Plus |
