Clone Sequence Records
BO07081.3prime Sequence
863 bp (770 high quality bases) assembled on 2005-12-03
> BO07081.3prime
ATGGTCTAGAAAGCTTGCGTTGCGATTCAGCCAGAATATTGTCTTGAGAA
CGAAGTAGGCCAGGCCCAGACAGTAGACGATCTTCTCCCGCTGCGTGCGC
TGTTCATTGTTGATCTCGATGTTCAGCACCCGGCGATTCAGCTTGGCCAG
CTGGCGTCTCAGATACAGGATCTCCTCGTGGGGCGTCAGCTCGCCCATGG
GCGTGCCCTCTCGGTGCGCCAGCATTGAGGCATCCAGGTTGTTGTGCTGC
TGTTGATTCAGCTGCGAGCGCTTGCTGGCACTGCCTGTGGTCAACTGCGA
GTCCGATTCAACGGAATTGGTGTCATTGCCTTGAAATCCCATACGGGCGA
CTCCATTGGCACGCACATATTGGGTGGCATGGACCTCCTCATCGTCGGCG
TCCTCGTCGAGATCATTACCATACAAATGATGACCATTGGCCCGGATGGG
CGAGCTCTCCTCGGAGGCCGAGGGAAAGTGTTGATCGGTGAGGGTGATAA
TGCGCGGTGGCGTCTGGACGCGCACCAATCCGACCGATGGGTTCTTGGGC
AGAATGGAGTTCTCCAGCTGGATTTCCCGCGGAGCAGATCGCGTCTCCAG
ATGCTGATTGTGGCCCAGGACCACAATTCGATCCGGTACATTCATGTCGA
TCTTGTCGTGATAGTTCCAGGAGCTGATCATCCCGTTCTGGTTGGACAGC
AGCAGATCCTCGTTGGAATACTCCCCGGTGGCCTTTATTCTTTTGGGAAC
CCGCATCTTGTCGTTAATCTCGTGGGCATATTTGGCGTCGCTGTAGAGAT
CATCGTCCAATCCATTGAACATGGGCGTCGGCGATTGCGGGGTCACCATG
TCGACTGATAACT
BO07081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30404-PA | 834 | CG30404-RA | 1..831 | 849..19 | 4155 | 100 | Minus |
CG30404-PB | 834 | CG30404-RB | 1..831 | 849..19 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango11-RB | 1682 | CG30404-RB | 206..1041 | 854..19 | 4165 | 99.9 | Minus |
Tango11-RA | 1629 | CG30404-RA | 153..988 | 854..19 | 4165 | 99.9 | Minus |
Tango11-RC | 1007 | CG30404-RC | 90..366 | 295..19 | 1385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21719077..21719640 | 291..854 | 2790 | 99.6 | Plus |
2R | 25286936 | 2R | 21717421..21717699 | 19..297 | 1395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:26:40 has no hits.
BO07081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:43 Download gff for
BO07081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30404-PA | 1..834 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:33 Download gff for
BO07081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30404-PB | 1..834 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:23 Download gff for
BO07081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RA | 147..988 | 19..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:37 Download gff for
BO07081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RA | 147..988 | 19..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:37 Download gff for
BO07081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21717421..21717696 | 19..294 | 100 | <- | Plus |
2R | 21719081..21719646 | 295..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:23 Download gff for
BO07081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17604926..17605201 | 19..294 | 100 | <- | Plus |
arm_2R | 17606586..17607151 | 295..863 | 99 | | Plus |
BO07081.5prime Sequence
837 bp (820 high quality bases) assembled on 2005-12-03
> BO07081.5prime
GAAGTTATCAGTCGACATGGTGACCCCGCAATCGCCGACGCCCATGTTCA
ATGGATTGGACGATGATCTCTACAGCGACGCCAAATATGCCCACGAGATT
AACGACAAGATGCGGGTTCCCAAAAGAATAAAGGCCACCGGGGAGTATTC
CAACGAGGATCTGCTGCTGTCCAACCAGAACGGGATGATCAGCTCCTGGA
ACTATCACGACAAGATCGACATGAATGTACCGGATCGAATTGTGGTCCTG
GGCCACAATCAGCATCTGGAGACGCGATCTGCTCCGCGGGAAATCCAGCT
GGAGAACTCCATTCTGCCCAAGAACCCATCGGTCGGATTGGTGCGCGTCC
AGACGCCACCGCGCATTATCACCCTCACCGATCAACACTTTCCCTCGGCC
TCCGAGGAGAGCTCGCCCATCCGGGCCAATGGTCATCATTTGTATGGTAA
TGATCTCGACGAGGACGCCGACGATGAGGAGGTCCATGCCACCCAATATG
TGCGTGCCAATGGAGTCGCCCGTATGGGATTTCAAGGCAATGACACCAAT
TCCGTTGAATCGGACTCGCAGTTGACCACAGGCAGTGCCAGCAAGCGCTC
GCAGCTGAATCAACAGCAGCACAACAACCTGGATGCCTCAATGCTGGCGC
ACCGAGAGGGCACGCCCATGGGCGAGCTGACGCCCCACGAGGAGATCCTG
TATCTGAGACGCCAGCTGGCCAAGCTGAATCGCCGGGTGCTGAACATCGA
GATCAACAATGAACAGCGCACGCAGCGGGAGAAGATCGTCTACTGTCTGG
GCCTGGCCTACTTCGTTCTCAAGACAATATTCTGGCT
BO07081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30404-PA | 834 | CG30404-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
CG30404-PB | 834 | CG30404-RB | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango11-RB | 1682 | CG30404-RB | 206..1031 | 12..837 | 4115 | 99.9 | Plus |
Tango11-RA | 1629 | CG30404-RA | 153..978 | 12..837 | 4115 | 99.9 | Plus |
Tango11-RC | 1007 | CG30404-RC | 90..356 | 571..837 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21719077..21719640 | 575..12 | 2790 | 99.6 | Minus |
2R | 25286936 | 2R | 21717431..21717699 | 837..569 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:53:39 has no hits.
BO07081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:44 Download gff for
BO07081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30404-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:35 Download gff for
BO07081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30404-PB | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:25 Download gff for
BO07081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RA | 147..978 | 3..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:41 Download gff for
BO07081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RA | 147..978 | 3..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:41 Download gff for
BO07081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21717431..21717696 | 572..837 | 100 | <- | Minus |
2R | 21719081..21719646 | 3..571 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:25 Download gff for
BO07081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17604936..17605201 | 572..837 | 100 | <- | Minus |
arm_2R | 17606586..17607151 | 3..571 | 99 | | Minus |
BO07081.complete Sequence
865 bp (865 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630656
> BO07081.complete
GAAGTTATCAGTCGACATGGTGACCCCGCAATCGCCGACGCCCATGTTCA
ATGGATTGGACGATGATCTCTACAGCGACGCCAAATATGCCCACGAGATT
AACGACAAGATGCGGGTTCCCAAAAGAATAAAGGCCACCGGGGAGTATTC
CAACGAGGATCTGCTGCTGTCCAACCAGAACGGGATGATCAGCTCCTGGA
ACTATCACGACAAGATCGACATGAATGTACCGGATCGAATTGTGGTCCTG
GGCCACAATCAGCATCTGGAGACGCGATCTGCTCCGCGGGAAATCCAGCT
GGAGAACTCCATTCTGCCCAAGAACCCATCGGTCGGATTGGTGCGCGTCC
AGACGCCACCGCGCATTATCACCCTCACCGATCAACACTTTCCCTCGGCC
TCCGAGGAGAGCTCGCCCATCCGGGCCAATGGTCATCATTTGTATGGTAA
TGATCTCGACGAGGACGCCGACGATGAGGAGGTCCATGCCACCCAATATG
TGCGTGCCAATGGAGTCGCCCGTATGGGATTTCAAGGCAATGACACCAAT
TCCGTTGAATCGGACTCGCAGTTGACCACAGGCAGTGCCAGCAAGCGCTC
GCAGCTGAATCAACAGCAGCACAACAACCTGGATGCCTCAATGCTGGCGC
ACCGAGAGGGCACGCCCATGGGCGAGCTGACGCCCCACGAGGAGATCCTG
TATCTGAGACGCCAGCTGGCCAAGCTGAATCGCCGGGTGCTGAACATCGA
GATCAACAATGAACAGCGCACGCAGCGGGAGAAGATCGTCTACTGTCTGG
GCCTGGCCTACTTCGTTCTCAAGACAATATTCTGGCTGAATCGCAACGCA
AGCTTTCTAGACCAT
BO07081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango11-RB | 834 | CG30404-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
Tango11-RA | 834 | CG30404-PA | 1..831 | 17..847 | 4155 | 100 | Plus |
Tango11-RC | 282 | CG30404-PC | 3..279 | 571..847 | 1385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango11-RB | 1682 | CG30404-RB | 206..1041 | 12..847 | 4165 | 99.9 | Plus |
Tango11-RA | 1629 | CG30404-RA | 153..988 | 12..847 | 4165 | 99.9 | Plus |
Tango11-RC | 1007 | CG30404-RC | 90..366 | 571..847 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21719077..21719640 | 575..12 | 2790 | 99.6 | Minus |
2R | 25286936 | 2R | 21717421..21717699 | 847..569 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:15 has no hits.
BO07081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:24 Download gff for
BO07081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RB | 1..834 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:56 Download gff for
BO07081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RB | 200..1041 | 3..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:50 Download gff for
BO07081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RA | 158..988 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:25 Download gff for
BO07081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RB | 200..1041 | 3..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:03 Download gff for
BO07081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tango11-RA | 158..988 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:03 Download gff for
BO07081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21717419..21717696 | 572..849 | 99 | <- | Minus |
2R | 21719081..21719635 | 17..571 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:50 Download gff for
BO07081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17604924..17605201 | 572..849 | 99 | <- | Minus |
arm_2R | 17606586..17607140 | 17..571 | 100 | | Minus |
BO07081.pep Sequence
Translation from 16 to 865
> BO07081.pep
MVTPQSPTPMFNGLDDDLYSDAKYAHEINDKMRVPKRIKATGEYSNEDLL
LSNQNGMISSWNYHDKIDMNVPDRIVVLGHNQHLETRSAPREIQLENSIL
PKNPSVGLVRVQTPPRIITLTDQHFPSASEESSPIRANGHHLYGNDLDED
ADDEEVHATQYVRANGVARMGFQGNDTNSVESDSQLTTGSASKRSQLNQQ
QHNNLDASMLAHREGTPMGELTPHEEILYLRRQLAKLNRRVLNIEINNEQ
RTQREKIVYCLGLAYFVLKTIFWLNRNASFLDH
BO07081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tango11-PB | 277 | CG30404-PB | 1..277 | 1..277 | 1449 | 100 | Plus |
Tango11-PA | 277 | CG30404-PA | 1..277 | 1..277 | 1449 | 100 | Plus |
Tango11-PC | 93 | CG30404-PC | 2..93 | 186..277 | 474 | 100 | Plus |