Clone Sequence Records
BO07084.3prime Sequence
880 bp (797 high quality bases) assembled on 2005-12-03
> BO07084.3prime
ATGGTCTAGAAAGCTTGCATCCTGTTTGGCCTTGGCCATCTCGCGAGTTA
TCGCTCTCAGTTCTTCCAATGTTGGCACTGGAACACGTGAAGATTCGGTT
TCATCCTCCTTGGACGCCAGTTCCGGATGTTTTTTCCATTTGTGGGAGCG
ACAGTTGGTGTTGCTGGCGAACGCCTTTCCGCAGTACTTGCATACGTAGG
GTCTGAGGCCGGTGTGTCCAAGGAGATGGATCTTCAAGGCCGTGGAGTTC
TTACAGCCGCTGCCACAAACCTCGCACTTGAAGCGCCGCTCATCCGTGTG
CACATACTTGTGCTTGTTAAGAATCGCCCGTGTCTGCAGCTTTTTGCCGC
AGACATTGCACTCAAACTTGGGCTCACCATGTGTCTGACTGTGCACTCTC
AGCCTAGCTTTGTTCTTAAAACCAGCATTGCAGACGGGGCATATACAGGG
CTTCTCTTCCGTGTGAACCAGCTGGTGCTCCACCAGCGATGTGAAGGTCT
TCAAACCCTTTCCGCAGTGATCGCAAACGTATTTCTTCGGACCGCCGTGC
ATGTCGTGCTTGTGCCTGCGCAGAGCCATGAAGGACATAAAGGTTTCGTT
GCAGATTTTGCAGGGATAATCGACGAAATTCGAACTCTGGGAGCCATGGG
GTGACATGCTCAATTCGGATGTCTTGTCATCTTGTTTGGATTTAGCATTG
TCGTCTGGTTCGCGGGAAGTTACGTTATCGCTGTCGTCCACGTTTTTCTG
TTTGCCTGAGCCCTTGGGTCTGCCTCTTTTTCGCTTCAAAGGCGGCGGGG
ATACGGCCTCGTCTTCGTCTAGAATGGCCTCCTCATCATCCGACTCGGGT
GCAGTGTACACTTTGGAATTTCGCTTAGCC
BO07084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4148-PA | 1413 | wek-RA | 549..1410 | 880..19 | 4285 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wek-RB | 2033 | CG4148-RB | 667..1528 | 880..19 | 4295 | 99.9 | Minus |
wek-RA | 1691 | CG4148-RA | 667..1528 | 880..19 | 4295 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15767138..15767623 | 395..880 | 2415 | 99.8 | Plus |
2L | 23513712 | 2L | 15766733..15767079 | 50..396 | 1735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:01:33 has no hits.
BO07084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:47 Download gff for
BO07084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-PA | 549..1413 | 18..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:39 Download gff for
BO07084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4148-PA | 549..1413 | 18..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:24 Download gff for
BO07084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 667..1528 | 19..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:54 Download gff for
BO07084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 667..1528 | 19..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:54 Download gff for
BO07084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15766639..15766668 | 20..49 | 100 | <- | Plus |
2L | 15766733..15767079 | 50..396 | 100 | <- | Plus |
2L | 15767140..15767623 | 397..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:24 Download gff for
BO07084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15766639..15766668 | 20..49 | 100 | <- | Plus |
arm_2L | 15766733..15767079 | 50..396 | 100 | <- | Plus |
arm_2L | 15767140..15767623 | 397..880 | 99 | | Plus |
BO07084.5prime Sequence
841 bp (801 high quality bases) assembled on 2005-12-03
> BO07084.5prime
GAAGTTATCAGTCGACATGGGAGTTCCCACAAGCGATTGGATATACTGGT
GTCGCCTGTGCGCCCGCGACGACGTTGTATACAAAGTGCGCGAGCGGGAC
GACGATCTGGTTAGGATTATCAGCAAATGCTTTGATGTGGAGATGACCCT
CGAGGAACCGGAACTGGGCAGCATGTTGTGCGAGGAGTGCTACTCGGTGA
TTGGCCAGCTGATCACCTTCTCGGATAGCGTTTCCAAAGTACAAGCCATT
TTTGAGCTTCTGCGACACTCGGAGCCGCAGGATAGCCAGGACTTGGACGC
CCTGCGTCTGGAATACGGCCTTCCGCCGGCCTGCAAGCAGGACCTCGAGT
TCCTGGACATAGACGATACGGAGGATAGGTGTTCCTTGGTAGAGGAGCTA
ACGATATCAGACCATTCCACATCTCCGTCACCCGATTTTGAAGCACAGAC
CGTGCGAACACGAGCTAATCTCAAACAGTGTAATTCCGATCCCAAAGTGC
TAGCCTCACCTACTGCATCAATTCCTGAAGTTGAAACAAAACGAAGTCGC
CGACAGCAGTTTGCGGCTAAGCGAAATTCCAAAGTGTACACTGCAACCGA
GTCGGATGATGAGGAGGCCATTCTAGACGAAGACGAGGCCGTATCCCCGC
CGCCTTTGAAGCGAAAAAGAGGCAGACCCAAGGGCTCAGGCAAACAGAAA
AACGTGGACGACAGCGATAACGTAACTTCCCGCGAACCAGACGACAATGC
TAAATCCAAACAAGATGACAAGACATCCGAATTGAGCATGTCACCCCATG
GCTCCCAGAGTTCGAATTTCGTCGATTATCCCTGCAAAATC
BO07084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4148-PA | 1413 | wek-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wek-RB | 2033 | CG4148-RB | 118..943 | 16..841 | 4130 | 100 | Plus |
wek-RA | 1691 | CG4148-RA | 118..943 | 16..841 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15767347..15768047 | 841..141 | 3505 | 100 | Minus |
2L | 23513712 | 2L | 15768106..15768232 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:26:48 has no hits.
BO07084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:48 Download gff for
BO07084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:40 Download gff for
BO07084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4148-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:25 Download gff for
BO07084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 112..943 | 7..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:40 Download gff for
BO07084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 112..943 | 7..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:40 Download gff for
BO07084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15767347..15768045 | 143..841 | 100 | <- | Minus |
2L | 15768106..15768238 | 7..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:25 Download gff for
BO07084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15767347..15768045 | 143..841 | 100 | <- | Minus |
arm_2L | 15768106..15768238 | 7..142 | 97 | | Minus |
BO07084.complete Sequence
1444 bp (1444 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630657
> BO07084.complete
GAAGTTATCAGTCGACATGGGAGTTCCCACAAGCGATTGGATATACTGGT
GTCGCCTGTGCGCCCGCGACGACGTTGTATACAAAGTGCGCGAGCGGGAC
GACGATCTGGTTAGGATTATCAGCAAATGCTTTGATGTGGAGATGACCCT
CGAGGAACCGGAACTGGGCAGCATGTTGTGCGAGGAGTGCTACTCGGTGA
TTGGCCAGCTGATCACCTTCTCGGATAGCGTTTCCAAAGTACAAGCCATT
TTTGAGCTTCTGCGACACTCGGAGCCGCAGGATAGCCAGGACTTGGACGC
CCTGCGTCTGGAATACGGCCTTCCGCCGGCCTGCAAGCAGGACCTCGAGT
TCCTGGACATAGACGATACGGAGGATAGGTGTTCCTTGGTAGAGGAGCTA
ACGATATCAGACCATTCCACATCTCCGTCACCCGATTTTGAAGCACAGAC
CGTGCGAACACGAGCTAATCTCAAACAGTGTAATTCCGATCCCAAAGTGC
TAGCCTCACCTACTGCATCAATTCCTGAAGTTGAAACAAAACGAAGTCGC
CGACAGCAGTTTGCGGCTAAGCGAAATTCCAAAGTGTACACTGCAACCGA
GTCGGATGATGAGGAGGCCATTCTAGACGAAGACGAGGCCGTATCCCCGC
CGCCTTTGAAGCGAAAAAGAGGCAGACCCAAGGGCTCAGGCAAACAGAAA
AACGTGGACGACAGCGATAACGTAACTTCCCGCGAACCAGACGACAATGC
TAAATCCAAACAAGATGACAAGACATCCGAATTGAGCATGTCACCCCATG
GCTCCCAGAGTTCGAATTTCGTCGATTATCCCTGCAAAATCTGCAACGAA
ACCTTTATGTCCTTCATGGCTCTGCGCAGGCACAAGCACGACATGCACGG
CGGTCCGAAGAAATACGTTTGCGATCACTGCGGAAAGGGTTTGAAGACCT
TCACATCGCTGGTGGAGCACCAGCTGGTTCACACGGAAGAGAAGCCCTGT
ATATGCCCCGTCTGCAATGCTGGTTTTAAGAACAAAGCTAGGCTGAGAGT
GCACAGTCAGACACATGGTGAGCCCAAGTTTGAGTGCAATGTCTGCGGCA
AAAAGCTGCAGACACGGGCGATTCTTAACAAGCACAAGTATGTGCACACG
GATGAGCGGCGCTTCAAGTGCGAGGTTTGTGGCAGCGGCTGTAAGAACTC
CACGGCCTTGAAGATCCATCTCCTTGGACACACCGGCCTCAGACCCTACG
TATGCAAGTACTGCGGAAAGGCGTTCGCCAGCAACACCAACTGTCGCTCC
CACAAATGGAAAAAACATCCGGAACTGGCGTCCAAGGAGGATGAAACCGA
ATCTTCACGTGTTCCAGTGCCAACATTGGAAGAACTGAGAGCGATAACTC
GCGAGATGGCCAAGGCCAAACAGGATGCAAGCTTTCTAGACCAT
BO07084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wek-RB | 1413 | CG4148-PB | 1..1410 | 17..1426 | 7050 | 100 | Plus |
wek-RA | 1413 | CG4148-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wek-RB | 2033 | CG4148-RB | 118..1528 | 16..1426 | 7055 | 100 | Plus |
wek-RA | 1691 | CG4148-RA | 118..1528 | 16..1426 | 7055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15767138..15768047 | 1050..141 | 4550 | 100 | Minus |
2L | 23513712 | 2L | 15766733..15767079 | 1395..1049 | 1735 | 100 | Minus |
2L | 23513712 | 2L | 15768106..15768232 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:20 has no hits.
BO07084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:26 Download gff for
BO07084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 1..1413 | 17..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:58 Download gff for
BO07084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 80..1496 | 7..1426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:30 Download gff for
BO07084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 119..1528 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:26 Download gff for
BO07084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 80..1496 | 7..1426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:15 Download gff for
BO07084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wek-RA | 119..1528 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:15 Download gff for
BO07084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15766636..15766668 | 1396..1428 | 93 | <- | Minus |
2L | 15766733..15767079 | 1049..1395 | 100 | <- | Minus |
2L | 15767140..15768045 | 143..1048 | 100 | <- | Minus |
2L | 15768106..15768231 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:30 Download gff for
BO07084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15766636..15766668 | 1396..1428 | 93 | <- | Minus |
arm_2L | 15766733..15767079 | 1049..1395 | 100 | <- | Minus |
arm_2L | 15767140..15768045 | 143..1048 | 100 | <- | Minus |
arm_2L | 15768106..15768231 | 17..142 | 100 | | Minus |
BO07084.pep Sequence
Translation from 16 to 1444
> BO07084.pep
MGVPTSDWIYWCRLCARDDVVYKVRERDDDLVRIISKCFDVEMTLEEPEL
GSMLCEECYSVIGQLITFSDSVSKVQAIFELLRHSEPQDSQDLDALRLEY
GLPPACKQDLEFLDIDDTEDRCSLVEELTISDHSTSPSPDFEAQTVRTRA
NLKQCNSDPKVLASPTASIPEVETKRSRRQQFAAKRNSKVYTATESDDEE
AILDEDEAVSPPPLKRKRGRPKGSGKQKNVDDSDNVTSREPDDNAKSKQD
DKTSELSMSPHGSQSSNFVDYPCKICNETFMSFMALRRHKHDMHGGPKKY
VCDHCGKGLKTFTSLVEHQLVHTEEKPCICPVCNAGFKNKARLRVHSQTH
GEPKFECNVCGKKLQTRAILNKHKYVHTDERRFKCEVCGSGCKNSTALKI
HLLGHTGLRPYVCKYCGKAFASNTNCRSHKWKKHPELASKEDETESSRVP
VPTLEELRAITREMAKAKQDASFLDH
BO07084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wek-PB | 470 | CG4148-PB | 1..470 | 1..470 | 2521 | 100 | Plus |
wek-PA | 470 | CG4148-PA | 1..470 | 1..470 | 2521 | 100 | Plus |
CG17568-PA | 513 | CG17568-PA | 5..508 | 6..466 | 823 | 38.5 | Plus |
CG10366-PA | 578 | CG10366-PA | 21..500 | 4..462 | 539 | 28.7 | Plus |
CG6254-PA | 634 | CG6254-PA | 392..580 | 270..457 | 524 | 51.3 | Plus |
CG10366-PA | 578 | CG10366-PA | 349..514 | 257..417 | 178 | 27.6 | Plus |