Clone BO07087 Report

Search the DGRC for BO07087

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptcaz-RB
Protein status:BO07087.pep: validated full length
Sequenced Size:1231

Clone Sequence Records

BO07087.3prime Sequence

875 bp (836 high quality bases) assembled on 2005-12-03

> BO07087.3prime
ATGGTCTAGAAAGCTTGCATATGGTCTCGAGCGCATGCCTCCATCGTTTC
TCATCGGTCCACCATCGCGGCGATTGCCGCCACCACCTCCACGGCCACCG
CGTCCTCCGCCATTGTTGTCATTGAAGCGGGAGTAGCCACCACCACCGCC
GCCGCCGCCTCCGCCTCCCTGCGAGTTGCCACCGCGATCTCTGTTGTGAT
ATCCACCGCCGCCGGATCCACGATCATTTCCTCGGTCGTAGCCTCCTCCG
CCACCACCGCCGCCGTAGCCGCCGCCTCCACCACCTCCGCTAGAGCCCTC
GTCGTCGCCCTTGGGAGTCTTACATCTATTGCATTCGTTGCGCCAGGCAA
AGTTGGTGTTATTACAGCTGTTGCATTTCCAGTCACCATCACGGGGCTGC
ACGTTGCCACCGCCGCCGCCACCACCACCGCCTCCTCCGCGATCGTAGCG
TCCGCCGCCACCGCCTCCTCCGCGATCGAAGCGACCTCCACCGCCGCCGC
CACCTCCTCCGCCGCCACCACCACCGCGACGTCCGCCAAATCCTCCGCGA
CCACCACCACCGCCGCCGCCGCCTCCGCCCTTGTTCCAGTTGTTCTGGCG
CTGGGCCAGCGACACCTTGATCGCATTGCCGTTGAAGTCGCGTCCATCGA
ACCATTCAATGGCGGATTGTGCAGCATTGGTGTCGTCGTAGGTGACAGTG
GCCTCTCCCTTGGAGGCGCCGGTCTCCTTGTTCTTGTACAGCCAAATCTT
GGGCTTCATTGTACGCTTGTCTTTCTTGATGATGCCAATTGCTCCAAAGT
GTGTCTCAATGTCCTGCTCGGTGGTCGAGGGATCCATGCCGGAGACAAAG
ATGGTGTCCTCCTGGGTGATCATGT

BO07087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3606-PB 1200 caz-RB 341..1197 875..19 4285 100 Minus
CG3606-PA 1200 caz-RA 446..1197 770..19 3760 100 Minus
CG3606-PA 1200 caz-RA 341..441 875..775 505 100 Minus
CG1840-PA 357 CG1840-RA 203..236 527..494 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RE 1631 CG3606-RE 447..1303 875..19 4285 100 Minus
caz-RD 1534 CG3606-RD 350..1206 875..19 4285 100 Minus
caz-RC 1621 CG3606-RC 437..1293 875..19 4285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16292193..16292643 776..326 2255 100 Minus
X 23542271 X 16292884..16293192 327..19 1545 100 Minus
X 23542271 X 16292010..16292110 875..775 505 100 Minus
Blast to na_te.dros performed 2015-02-12 09:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 622..728 812..700 119 59.3 Minus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 9139..9245 812..700 119 59.3 Minus

BO07087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:54 Download gff for BO07087.3prime
Subject Subject Range Query Range Percent Splice Strand
caz-PB 341..1200 15..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:47 Download gff for BO07087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3606-PB 341..1200 15..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:26 Download gff for BO07087.3prime
Subject Subject Range Query Range Percent Splice Strand
caz-RC 437..1298 13..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:48 Download gff for BO07087.3prime
Subject Subject Range Query Range Percent Splice Strand
caz-RC 437..1298 13..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:48 Download gff for BO07087.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16292010..16292110 775..875 100 -> Minus
X 16292195..16292643 326..774 100 -> Minus
X 16292886..16293197 13..325 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:26 Download gff for BO07087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16186043..16186143 775..875 100 -> Minus
arm_X 16186228..16186676 326..774 100 -> Minus
arm_X 16186919..16187230 13..325 99   Minus

BO07087.5prime Sequence

908 bp (723 high quality bases) assembled on 2005-12-03

> BO07087.5prime
GAAGTTATCAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGAC
AGGGATATAATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCA
AATAAAACGGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGG
CGGTGGTTATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCA
ACGGTGGCGGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTAC
GGAAATGGAGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATA
CTCGGGCGGCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTG
GCAACGACATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGAT
CCCTCGACCACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCAT
CATCAAGAAAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGA
ACAAGGAGACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGAC
ACCAATGCTGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAA
CGGCAATGCGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACA
AGGGCGGAGGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGA
CGTCGCGGTGGTGGTGGCGGCGGAGGAGGTGGCGGCGGCGGTGGAGGTCG
CTTCGATCGCGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAG
GCGGTGGTGGTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGAC
TGGAAATGCAACAGCTGTAATAACACCAACTTTGCCTGGCGCAACGAATG
CAATAGAT

BO07087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3606-PB 1200 caz-RB 1..892 17..908 4460 100 Plus
CG3606-PA 1200 caz-RA 446..892 462..908 2235 100 Plus
CG3606-PA 1200 caz-RA 1..441 17..457 2205 100 Plus
CG3606-PB 1200 caz-RB 1051..1079 653..681 145 100 Plus
CG3606-PA 1200 caz-RA 1051..1079 653..681 145 100 Plus
CG1840-PA 357 CG1840-RA 203..236 705..738 145 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RB 1666 CG3606-RB 140..1033 15..908 4470 100 Plus
caz-RC 1621 CG3606-RC 235..988 155..908 3770 100 Plus
caz-RD 1534 CG3606-RD 149..901 156..908 3765 100 Plus
caz-RC 1621 CG3606-RC 140..237 15..112 490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16292193..16292643 456..906 2255 100 Plus
X 23542271 X 16291939..16292110 286..457 860 100 Plus
X 23542271 X 16289027..16289160 24..157 670 100 Plus
X 23542271 X 16289225..16289322 155..252 490 100 Plus
X 23542271 X 16291056..16291092 252..288 185 100 Plus
Blast to na_te.dros performed 2015-02-11 03:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 622..728 420..532 119 59.3 Plus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 9139..9245 420..532 119 59.3 Plus

BO07087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:54 Download gff for BO07087.5prime
Subject Subject Range Query Range Percent Splice Strand
caz-PB 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:49 Download gff for BO07087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3606-PB 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:40 Download gff for BO07087.5prime
Subject Subject Range Query Range Percent Splice Strand
caz-RB 140..1033 15..908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:03:03 Download gff for BO07087.5prime
Subject Subject Range Query Range Percent Splice Strand
caz-RB 140..1033 15..908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:03:03 Download gff for BO07087.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16289027..16289158 24..155 100 -> Plus
X 16289226..16289322 156..252 100 -> Plus
X 16291057..16291091 253..287 100 -> Plus
X 16291941..16292110 288..457 100 -> Plus
X 16292195..16292645 458..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:40 Download gff for BO07087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16183060..16183191 24..155 100 -> Plus
arm_X 16183259..16183355 156..252 100 -> Plus
arm_X 16185090..16185124 253..287 100 -> Plus
arm_X 16185974..16186143 288..457 100 -> Plus
arm_X 16186228..16186678 458..908 99   Plus

BO07087.complete Sequence

1231 bp (1231 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630659

> BO07087.complete
GAAGTTATCAGTCGACATGGAACGTGGCGGTTATGGTGGTGGTTCGGGAC
AGGGATATAATAATTTCGCTGTCCCCCCACCAAATTACCAGCAAATGCCA
AATAAAACGGGTAACTACAACGAGCCACCTCCGAACTACGGCAAACAAGG
CGGTGGTTATGATTCCGGTTCCGGTCATCGTGGTTCTGGTGGCAGCGGCA
ACGGTGGCGGCGGCGGCGGATCATGGAACGACAGAGGAGGCAATTCCTAC
GGAAATGGAGGCGCCAGCAAGGACAGCTACAACAAAGGACACGGAGGATA
CTCGGGCGGCGGCGGTGGTGGTGGAGGAGGCGGCGGCGGTGGGTCCGGTG
GCAACGACATGATCACCCAGGAGGACACCATCTTTGTCTCCGGCATGGAT
CCCTCGACCACCGAGCAGGACATTGAGACACACTTTGGAGCAATTGGCAT
CATCAAGAAAGACAAGCGTACAATGAAGCCCAAGATTTGGCTGTACAAGA
ACAAGGAGACCGGCGCCTCCAAGGGAGAGGCCACTGTCACCTACGACGAC
ACCAATGCTGCACAATCCGCCATTGAATGGTTCGATGGACGCGACTTCAA
CGGCAATGCGATCAAGGTGTCGCTGGCCCAGCGCCAGAACAACTGGAACA
AGGGCGGAGGCGGCGGCGGCGGTGGTGGTGGTCGCGGAGGATTTGGCGGA
CGTCGCGGTGGTGGTGGCGGCGGAGGAGGTGGCGGCGGCGGTGGAGGTCG
CTTCGATCGCGGAGGAGGCGGTGGCGGCGGACGCTACGATCGCGGAGGAG
GCGGTGGTGGTGGCGGCGGCGGTGGCAACGTGCAGCCCCGTGATGGTGAC
TGGAAATGCAACAGCTGTAATAACACCAACTTTGCCTGGCGCAACGAATG
CAATAGATGTAAGACTCCCAAGGGCGACGACGAGGGCTCTAGCGGAGGTG
GTGGAGGCGGCGGCTACGGCGGCGGTGGTGGCGGAGGAGGCTACGACCGA
GGAAATGATCGTGGATCCGGCGGCGGTGGATATCACAACAGAGATCGCGG
TGGCAACTCGCAGGGAGGCGGAGGCGGCGGCGGCGGTGGTGGTGGCTACT
CCCGCTTCAATGACAACAATGGCGGAGGACGCGGTGGCCGTGGAGGTGGT
GGCGGCAATCGCCGCGATGGTGGACCGATGAGAAACGATGGAGGCATGCG
CTCGAGACCATATGCAAGCTTTCTAGACCAT

BO07087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RB 1200 CG3606-PB 1..1197 17..1213 5985 100 Plus
caz-RC 1155 CG3606-PC 94..1152 155..1213 5295 100 Plus
caz-RD 1068 CG3606-PD 8..1065 156..1213 5290 100 Plus
caz-RC 1155 CG3606-PC 1..96 17..112 480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
caz-RB 1666 CG3606-RB 140..1338 15..1213 5995 100 Plus
caz-RC 1621 CG3606-RC 235..1293 155..1213 5295 100 Plus
caz-RD 1534 CG3606-RD 149..1206 156..1213 5290 100 Plus
caz-RC 1621 CG3606-RC 140..237 15..112 490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16292193..16292643 456..906 2255 100 Plus
X 23542271 X 16292884..16293192 905..1213 1545 100 Plus
X 23542271 X 16291939..16292110 286..457 860 100 Plus
X 23542271 X 16289027..16289160 24..157 670 100 Plus
X 23542271 X 16289225..16289322 155..252 490 100 Plus
X 23542271 X 16291056..16291092 252..288 185 100 Plus
Blast to na_te.dros performed 2014-11-27 14:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 622..728 420..532 119 59.3 Plus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 9139..9245 420..532 119 59.3 Plus

BO07087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:01 Download gff for BO07087.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 1..1200 17..1217 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:28 Download gff for BO07087.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 104..1307 15..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:20 Download gff for BO07087.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 142..1338 17..1215 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:01 Download gff for BO07087.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 104..1307 15..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:55 Download gff for BO07087.complete
Subject Subject Range Query Range Percent Splice Strand
caz-RB 142..1338 17..1215 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:55 Download gff for BO07087.complete
Subject Subject Range Query Range Percent Splice Strand
X 16292886..16293192 907..1215 99   Plus
X 16289027..16289158 24..155 100 -> Plus
X 16289226..16289322 156..252 100 -> Plus
X 16291057..16291091 253..287 100 -> Plus
X 16291941..16292110 288..457 100 -> Plus
X 16292195..16292643 458..906 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:20 Download gff for BO07087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16183060..16183191 24..155 100 -> Plus
arm_X 16183259..16183355 156..252 100 -> Plus
arm_X 16185090..16185124 253..287 100 -> Plus
arm_X 16185974..16186143 288..457 100 -> Plus
arm_X 16186228..16186676 458..906 100 -> Plus
arm_X 16186919..16187225 907..1215 99   Plus

BO07087.pep Sequence

Translation from 16 to 1231

> BO07087.pep
MERGGYGGGSGQGYNNFAVPPPNYQQMPNKTGNYNEPPPNYGKQGGGYDS
GSGHRGSGGSGNGGGGGGSWNDRGGNSYGNGGASKDSYNKGHGGYSGGGG
GGGGGGGGGSGGNDMITQEDTIFVSGMDPSTTEQDIETHFGAIGIIKKDK
RTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIK
VSLAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGG
GGGGGRYDRGGGGGGGGGGGNVQPRDGDWKCNSCNNTNFAWRNECNRCKT
PKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGSGGGGYHNRDRGGNSQG
GGGGGGGGGGYSRFNDNNGGGRGGRGGGGGNRRDGGPMRNDGGMRSRPYA
SFLDH

BO07087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
caz-PB 399 CG3606-PB 1..399 1..399 2288 100 Plus
caz-PC 384 CG3606-PC 1..384 1..399 2170 96.2 Plus
caz-PD 355 CG3606-PD 4..355 48..399 2012 100 Plus
caz-PE 124 CG3606-PE 1..79 1..79 463 100 Plus
Cpr47Ef-PD 601 CG13214-PD 38..440 39..393 455 36.1 Plus
caz-PD 355 CG3606-PD 173..349 42..260 233 35.8 Plus
caz-PD 355 CG3606-PD 214..337 2..113 178 41.9 Plus