Clone BO07088 Report

Search the DGRC for BO07088

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG8446-RB
Protein status:BO07088.pep: validated full length
Sequenced Size:1222

Clone Sequence Records

BO07088.3prime Sequence

854 bp (852 high quality bases) assembled on 2005-12-03

> BO07088.3prime
ATGGTCTAGAAAGCTTGCAGCTGATCCGTTTATTGCCTGCTTCACATTCG
ATGCGCTGACGAGCTTAAGGGCGCCAAGTATTCCGTTCAGGTTCTCCTCG
TTGTAGGGCTTGCCCTGGAGCGGAGTCACCACCGGGACGAGCTGATCGCT
CTGCGGCAGCTGGATGCCGATCTCCTTCATTAATCCCGCTTCCACTTCCA
CGCTTAGTTTCAGTTTCATGTCCTGCTCATCGCCCTTCACCTCCAGTTCC
TTCTGCACGGTGAACTTGGGAGTCTTGCCGATGACCCAGTCCCAAGAGCT
GTAGTTGGAGCGCAATTCCTCAATGCCGGGGAACCATTTCTCTGTGGGAT
TGACCAGCTGAAAGCCGCGCTGCTGCATCGTCTGTGTGCTGCCGCCGTCT
TCAAGCGTAGTTGCAGCCGTTCTCAAATACTCGTAACCCACGGCGGAACG
CAGCTGAGCAACGTTCACCGTGCGATTGACATCAACCAGGTTGCGAATGG
GCGACGGCACCGAAGCCGTGGCCTTGCTAATATAATTGGCCGGCTCCCGC
ACCAGAGATTCGCCCAAGTGCAATTTGTTGGCGCTGGCCAAAATGGTGCA
GTGATGGTACGAGTTCGGGTGTCCCAGCTTGGCCGCAGTGCCGGAAATCT
TCTTATTCATCACTACAATGTCGTCGCGCTCATTTATCTCTGCCTTGATG
GCCCATTCGCGGAACAAGGCCCTGGTCACGATGTTCAGGTTGTACTTGCG
ATCGTAGCGCTCTCTGGGCGAGAAAAAGGTGCAGTTGAGGTTCCCAAGAT
CATGGTACACCGCTCCACCGCCACTATTGCGGCGTGCAAGTGTTATGCCC
GCGT

BO07088.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8446-PA 1191 CG8446-RA 358..1188 849..19 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 2010 CG44243-RB 799..1629 849..19 4155 100 Minus
CG44243-RA 2131 CG44243-RA 1097..1927 849..19 4155 100 Minus
CG42837-RA 2131 CG42837-RA 1097..1927 849..19 4155 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16198483..16198947 650..186 2325 100 Minus
2R 25286936 2R 16198138..16198338 849..649 1005 100 Minus
2R 25286936 2R 16199006..16199174 187..19 845 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:26:57 has no hits.

BO07088.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:55 Download gff for BO07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 354..1191 16..854 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:50 Download gff for BO07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 354..1191 16..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:26 Download gff for BO07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 1093..1927 19..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:51 Download gff for BO07088.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 1093..1927 19..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:51 Download gff for BO07088.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16199007..16199174 19..186 100   Minus
2R 16198134..16198338 649..854 99 -> Minus
2R 16198485..16198946 187..648 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:26 Download gff for BO07088.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12085639..12085843 649..854 99 -> Minus
arm_2R 12085990..12086451 187..648 100 -> Minus
arm_2R 12086512..12086679 19..186 100   Minus

BO07088.5prime Sequence

894 bp (780 high quality bases) assembled on 2005-12-03

> BO07088.5prime
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGGCTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCC

BO07088.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8446-PA 1191 CG8446-RA 1..878 17..894 4340 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 2010 CG44243-RB 441..1319 16..894 4365 99.8 Plus
CG44243-RA 2131 CG44243-RA 739..1617 16..894 4365 99.8 Plus
CG42837-RA 2131 CG42837-RA 739..1617 16..894 4365 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16197780..16198338 16..574 2795 100 Plus
2R 25286936 2R 16198483..16198804 573..894 1580 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 01:34:27 has no hits.

BO07088.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:56 Download gff for BO07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:52 Download gff for BO07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8446-PA 1..878 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:22 Download gff for BO07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 736..1617 10..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:44 Download gff for BO07088.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 736..1617 10..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:44 Download gff for BO07088.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16198485..16198804 575..894 99   Plus
2R 16197777..16198338 10..574 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:22 Download gff for BO07088.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12085282..12085843 10..574 99 -> Plus
arm_2R 12085990..12086309 575..894 99   Plus

BO07088.complete Sequence

1222 bp (1222 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630660

> BO07088.complete
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGCTTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCCCGGCAT
TGAGGAATTGCGCTCCAACTACAGCTCTTGGGACTGGGTCATCGGCAAGA
CTCCCAAGTTCACCGTGCAGAAGGAACTGGAGGTGAAGGGCGATGAGCAG
GACATGAAACTGAAACTAAGCGTGGAAGTGGAAGCGGGATTAATGAAGGA
GATCGGCATCCAGCTGCCGCAGAGCGATCAGCTCGTCCCGGTGGTGACTC
CGCTCCAGGGCAAGCCCTACAACGAGGAGAACCTGAACGGAATACTTGGC
GCCCTTAAGCTCGTCAGCGCATCGAATGTGAAGCAGGCAATAAACGGATC
AGCTGCAAGCTTTCTAGACCAT

BO07088.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 1191 CG44243-PB 1..1188 17..1204 5940 100 Plus
CG44243-RA 1191 CG44243-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-RB 2010 CG44243-RB 441..1629 16..1204 5945 100 Plus
CG44243-RA 2131 CG44243-RA 739..1927 16..1204 5945 100 Plus
CG42837-RA 2131 CG42837-RA 739..1927 16..1204 5945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16197780..16198338 16..574 2795 100 Plus
2R 25286936 2R 16198483..16198947 573..1037 2325 100 Plus
2R 25286936 2R 16199006..16199174 1036..1204 845 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:36:23 has no hits.

BO07088.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:17 Download gff for BO07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 1..1191 17..1207 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:46 Download gff for BO07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 240..1431 10..1204 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:32 Download gff for BO07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 740..1927 17..1206 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:17 Download gff for BO07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 240..1431 10..1204 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:46 Download gff for BO07088.complete
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 740..1927 17..1206 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:46 Download gff for BO07088.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16197781..16198338 17..574 100 -> Plus
2R 16198485..16198946 575..1036 100 -> Plus
2R 16199007..16199174 1037..1206 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:32 Download gff for BO07088.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12085286..12085843 17..574 100 -> Plus
arm_2R 12085990..12086451 575..1036 100 -> Plus
arm_2R 12086512..12086679 1037..1206 98   Plus

BO07088.pep Sequence

Translation from 16 to 1222

> BO07088.pep
MSMLLRRNSSQLRLLLSSAAQATRLASSGVEPPSAGQQEIKKQRRQPPPV
VPDSEIKKSVFISQSSDVFTNLALEDWLYKNFDFSRHHVLLLWANDPCVV
IGRHQNPFTEANVSQLVERGITLARRNSGGGAVYHDLGNLNCTFFSPRER
YDRKYNLNIVTRALFREWAIKAEINERDDIVVMNKKISGTAAKLGHPNSY
HHCTILASANKLHLGESLVREPANYISKATASVPSPIRNLVDVNRTVNVA
QLRSAVGYEYLRTAATTLEDGGSTQTMQQRGFQLVNPTEKWFPGIEELRS
NYSSWDWVIGKTPKFTVQKELEVKGDEQDMKLKLSVEVEAGLMKEIGIQL
PQSDQLVPVVTPLQGKPYNEENLNGILGALKLVSASNVKQAINGSAASFL
DH

BO07088.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-PB 396 CG44243-PB 1..396 1..396 2033 100 Plus
CG44243-PA 396 CG44243-PA 1..396 1..396 2033 100 Plus