Clone Sequence Records
BO07088.3prime Sequence
854 bp (852 high quality bases) assembled on 2005-12-03
> BO07088.3prime
ATGGTCTAGAAAGCTTGCAGCTGATCCGTTTATTGCCTGCTTCACATTCG
ATGCGCTGACGAGCTTAAGGGCGCCAAGTATTCCGTTCAGGTTCTCCTCG
TTGTAGGGCTTGCCCTGGAGCGGAGTCACCACCGGGACGAGCTGATCGCT
CTGCGGCAGCTGGATGCCGATCTCCTTCATTAATCCCGCTTCCACTTCCA
CGCTTAGTTTCAGTTTCATGTCCTGCTCATCGCCCTTCACCTCCAGTTCC
TTCTGCACGGTGAACTTGGGAGTCTTGCCGATGACCCAGTCCCAAGAGCT
GTAGTTGGAGCGCAATTCCTCAATGCCGGGGAACCATTTCTCTGTGGGAT
TGACCAGCTGAAAGCCGCGCTGCTGCATCGTCTGTGTGCTGCCGCCGTCT
TCAAGCGTAGTTGCAGCCGTTCTCAAATACTCGTAACCCACGGCGGAACG
CAGCTGAGCAACGTTCACCGTGCGATTGACATCAACCAGGTTGCGAATGG
GCGACGGCACCGAAGCCGTGGCCTTGCTAATATAATTGGCCGGCTCCCGC
ACCAGAGATTCGCCCAAGTGCAATTTGTTGGCGCTGGCCAAAATGGTGCA
GTGATGGTACGAGTTCGGGTGTCCCAGCTTGGCCGCAGTGCCGGAAATCT
TCTTATTCATCACTACAATGTCGTCGCGCTCATTTATCTCTGCCTTGATG
GCCCATTCGCGGAACAAGGCCCTGGTCACGATGTTCAGGTTGTACTTGCG
ATCGTAGCGCTCTCTGGGCGAGAAAAAGGTGCAGTTGAGGTTCCCAAGAT
CATGGTACACCGCTCCACCGCCACTATTGCGGCGTGCAAGTGTTATGCCC
GCGT
BO07088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8446-PA | 1191 | CG8446-RA | 358..1188 | 849..19 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 2010 | CG44243-RB | 799..1629 | 849..19 | 4155 | 100 | Minus |
CG44243-RA | 2131 | CG44243-RA | 1097..1927 | 849..19 | 4155 | 100 | Minus |
CG42837-RA | 2131 | CG42837-RA | 1097..1927 | 849..19 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16198483..16198947 | 650..186 | 2325 | 100 | Minus |
2R | 25286936 | 2R | 16198138..16198338 | 849..649 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 16199006..16199174 | 187..19 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:26:57 has no hits.
BO07088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:55 Download gff for
BO07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 354..1191 | 16..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:50 Download gff for
BO07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 354..1191 | 16..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:26 Download gff for
BO07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44243-RA | 1093..1927 | 19..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:51 Download gff for
BO07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42837-RA | 1093..1927 | 19..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:51 Download gff for
BO07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16199007..16199174 | 19..186 | 100 | | Minus |
2R | 16198134..16198338 | 649..854 | 99 | -> | Minus |
2R | 16198485..16198946 | 187..648 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:26 Download gff for
BO07088.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12085639..12085843 | 649..854 | 99 | -> | Minus |
arm_2R | 12085990..12086451 | 187..648 | 100 | -> | Minus |
arm_2R | 12086512..12086679 | 19..186 | 100 | | Minus |
BO07088.5prime Sequence
894 bp (780 high quality bases) assembled on 2005-12-03
> BO07088.5prime
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGGCTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCC
BO07088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8446-PA | 1191 | CG8446-RA | 1..878 | 17..894 | 4340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 2010 | CG44243-RB | 441..1319 | 16..894 | 4365 | 99.8 | Plus |
CG44243-RA | 2131 | CG44243-RA | 739..1617 | 16..894 | 4365 | 99.8 | Plus |
CG42837-RA | 2131 | CG42837-RA | 739..1617 | 16..894 | 4365 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16197780..16198338 | 16..574 | 2795 | 100 | Plus |
2R | 25286936 | 2R | 16198483..16198804 | 573..894 | 1580 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:34:27 has no hits.
BO07088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:56 Download gff for
BO07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:52 Download gff for
BO07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:22 Download gff for
BO07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44243-RA | 736..1617 | 10..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:44 Download gff for
BO07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42837-RA | 736..1617 | 10..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:44 Download gff for
BO07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16198485..16198804 | 575..894 | 99 | | Plus |
2R | 16197777..16198338 | 10..574 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:22 Download gff for
BO07088.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12085282..12085843 | 10..574 | 99 | -> | Plus |
arm_2R | 12085990..12086309 | 575..894 | 99 | | Plus |
BO07088.complete Sequence
1222 bp (1222 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630660
> BO07088.complete
GAAGTTATCAGTCGACATGAGCATGCTGTTGCGACGCAATTCCAGCCAGC
TGCGGCTACTTCTCTCCTCCGCCGCTCAGGCCACGCGCCTGGCATCCAGC
GGAGTGGAGCCACCATCTGCTGGACAGCAGGAGATTAAAAAGCAGAGGCG
CCAGCCACCGCCCGTGGTTCCCGATTCGGAGATCAAGAAGTCCGTGTTCA
TCTCGCAGTCCAGCGATGTGTTCACCAACCTCGCTCTAGAGGATTGGCTG
TACAAAAACTTTGATTTCAGCCGCCACCATGTGCTGCTGCTGTGGGCCAA
CGACCCGTGCGTAGTCATTGGTCGCCACCAGAATCCCTTCACCGAGGCTA
ATGTTTCGCAGCTGGTGGAACGCGGCATAACACTTGCACGCCGCAATAGT
GGCGGTGGAGCGGTGTACCATGATCTTGGGAACCTCAACTGCACCTTTTT
CTCGCCCAGAGAGCGCTACGATCGCAAGTACAACCTGAACATCGTGACCA
GGGCCTTGTTCCGCGAATGGGCCATCAAGGCAGAGATAAATGAGCGCGAC
GACATTGTAGTGATGAATAAGAAGATTTCCGGCACTGCGGCCAAGCTGGG
ACACCCGAACTCGTACCATCACTGCACCATTTTGGCCAGCGCCAACAAAT
TGCACTTGGGCGAATCTCTGGTGCGGGAGCCGGCCAATTATATTAGCAAG
GCCACGGCTTCGGTGCCGTCGCCCATTCGCAACCTGGTTGATGTCAATCG
CACGGTGAACGTTGCTCAGCTGCGTTCCGCCGTGGGTTACGAGTATTTGA
GAACGGCTGCAACTACGCTTGAAGACGGCGGCAGCACACAGACGATGCAG
CAGCGCGGCTTTCAGCTGGTCAATCCCACAGAGAAATGGTTCCCCGGCAT
TGAGGAATTGCGCTCCAACTACAGCTCTTGGGACTGGGTCATCGGCAAGA
CTCCCAAGTTCACCGTGCAGAAGGAACTGGAGGTGAAGGGCGATGAGCAG
GACATGAAACTGAAACTAAGCGTGGAAGTGGAAGCGGGATTAATGAAGGA
GATCGGCATCCAGCTGCCGCAGAGCGATCAGCTCGTCCCGGTGGTGACTC
CGCTCCAGGGCAAGCCCTACAACGAGGAGAACCTGAACGGAATACTTGGC
GCCCTTAAGCTCGTCAGCGCATCGAATGTGAAGCAGGCAATAAACGGATC
AGCTGCAAGCTTTCTAGACCAT
BO07088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 1191 | CG44243-PB | 1..1188 | 17..1204 | 5940 | 100 | Plus |
CG44243-RA | 1191 | CG44243-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-RB | 2010 | CG44243-RB | 441..1629 | 16..1204 | 5945 | 100 | Plus |
CG44243-RA | 2131 | CG44243-RA | 739..1927 | 16..1204 | 5945 | 100 | Plus |
CG42837-RA | 2131 | CG42837-RA | 739..1927 | 16..1204 | 5945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16197780..16198338 | 16..574 | 2795 | 100 | Plus |
2R | 25286936 | 2R | 16198483..16198947 | 573..1037 | 2325 | 100 | Plus |
2R | 25286936 | 2R | 16199006..16199174 | 1036..1204 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:23 has no hits.
BO07088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:17 Download gff for
BO07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-RB | 1..1191 | 17..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:46 Download gff for
BO07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-RB | 240..1431 | 10..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:32 Download gff for
BO07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44243-RA | 740..1927 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:17 Download gff for
BO07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8446-RB | 240..1431 | 10..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:46 Download gff for
BO07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42837-RA | 740..1927 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:46 Download gff for
BO07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16197781..16198338 | 17..574 | 100 | -> | Plus |
2R | 16198485..16198946 | 575..1036 | 100 | -> | Plus |
2R | 16199007..16199174 | 1037..1206 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:32 Download gff for
BO07088.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12085286..12085843 | 17..574 | 100 | -> | Plus |
arm_2R | 12085990..12086451 | 575..1036 | 100 | -> | Plus |
arm_2R | 12086512..12086679 | 1037..1206 | 98 | | Plus |
BO07088.pep Sequence
Translation from 16 to 1222
> BO07088.pep
MSMLLRRNSSQLRLLLSSAAQATRLASSGVEPPSAGQQEIKKQRRQPPPV
VPDSEIKKSVFISQSSDVFTNLALEDWLYKNFDFSRHHVLLLWANDPCVV
IGRHQNPFTEANVSQLVERGITLARRNSGGGAVYHDLGNLNCTFFSPRER
YDRKYNLNIVTRALFREWAIKAEINERDDIVVMNKKISGTAAKLGHPNSY
HHCTILASANKLHLGESLVREPANYISKATASVPSPIRNLVDVNRTVNVA
QLRSAVGYEYLRTAATTLEDGGSTQTMQQRGFQLVNPTEKWFPGIEELRS
NYSSWDWVIGKTPKFTVQKELEVKGDEQDMKLKLSVEVEAGLMKEIGIQL
PQSDQLVPVVTPLQGKPYNEENLNGILGALKLVSASNVKQAINGSAASFL
DH
BO07088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44243-PB | 396 | CG44243-PB | 1..396 | 1..396 | 2033 | 100 | Plus |
CG44243-PA | 396 | CG44243-PA | 1..396 | 1..396 | 2033 | 100 | Plus |