Clone Sequence Records
BO07091.3prime Sequence
866 bp (773 high quality bases) assembled on 2005-12-03
> BO07091.3prime
ATGGTCTAGAAAGCTTGCGGTTTTCCGCTTCTGGTCGAGCTGCTGCTGCG
GCAGCTCCTCCTGCAGCTGAAGGATGTGTTCCAGCGGCTGCGGGCGCCCG
TCCTTGTCTATCATCGCCGGCTTTACGATCCCGCCCTGACGCAGCTGTTC
GATGAGATTGACCAGCTGCATAGCCTCGTATTCCTTCTGCTCTTCGCTTA
TGTCGTCCAGATGCGACTTGCTGCGCGGCTCTACGCAGCCAAGGACTGGA
TTGATGCCCTGCTGCTGCTGCTTGTACTCCTCGGTGTCGCTGTCCTCGCT
GTCGGAGGAGTAGTCGGTGCCCTCCACTCGCCGGCAGTCGAGTATACCCC
GCTTGGCAAAGAGCCCGGCTGCGTTGCCATAGCCCGTATATTTGATCATC
CTGCCGACATTTTCTTTGCACAGTACGAACAGCAGTTCGGCGGACAGATC
TCGTAGGATCATCGCGGGCAGTGTAAGGAACCGACACAGATGATTGCGCA
GCTCCTGACCAACCTCAGGTCGTTGACTAACGTCCCGCAGCGGCGGCAGA
ATCTCCTGGCGTAGATAGTGACGCATAACTCGATCGCTGCGCGCACATTT
CACCAGCACGGTCAGCACTGGGGAAAGCAACTCATGCGAGCTAGCCTCGG
CCTCCTGTTGGGCCAGAGATTGCCTTAGGTAGCGGAGTAGCACGTCCAGA
CTCCGAACATTGCGCTTTTCGAAGCACTGCGAGCAGCACTCACGGGGTTT
GGCTCCCGCTCCAGCTTCTGTATCTTTTTCCTTCTCGTTGTCCTGCTCTC
TTTTCTTGTGCGACTCCAACTCGGCATTGGAGCAACGCAGGGTGAGTTCT
GTCAGGCAGCTGCCGG
BO07091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15797-PA | 1722 | ric8a-RA | 872..1719 | 866..19 | 4215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ric8a-RB | 2970 | CG15797-RB | 1001..1848 | 866..19 | 4225 | 99.9 | Minus |
| ric8a-RA | 2438 | CG15797-RA | 1001..1848 | 866..19 | 4225 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9257233..9258080 | 866..19 | 4225 | 99.9 | Minus |
| X | 23542271 | X | 9260839..9261235 | 866..470 | 1910 | 98.7 | Minus |
Blast to na_te.dros performed 2015-02-12 09:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2387 | 102..15 | 122 | 61.4 | Minus |
BO07091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:08:59 Download gff for
BO07091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-PA | 872..1722 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:56 Download gff for
BO07091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15797-PA | 872..1722 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:28 Download gff for
BO07091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 1001..1853 | 13..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:55 Download gff for
BO07091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 1001..1853 | 13..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:55 Download gff for
BO07091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9257233..9258085 | 13..866 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:28 Download gff for
BO07091.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9151266..9152118 | 13..866 | 99 | | Minus |
BO07091.5prime Sequence
917 bp (823 high quality bases) assembled on 2005-12-03
> BO07091.5prime
GAAGTTATCAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCA
AGGAGGCGGACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAAT
GCGGATCTGCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGA
ACTGTGGCTGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATC
TGCATACGCAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTC
AGCCTGCAGACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCT
GGCTAGGATTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGC
TTAAACAGGAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAA
TCGGAGGTGATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCA
GAGCTCCGACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAA
TCCTGAAGAGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTAC
TACGACATGAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCG
CTCTCGCCTCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGC
TGGACGACAAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATC
ATCTGCGAACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAA
GAGCCCCAACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGA
GGGAGCTACTCCTGCGTTTCGGCGACTTGGGCACAGAAAAGGATCGCGCC
GTCGTCACACACGCCATCAATCTGCTGACAAACATCTCCGGCAGCTGCCT
GACAGAACTCACCCTGC
BO07091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15797-PA | 1722 | ric8a-RA | 1..901 | 17..917 | 4480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ric8a-RB | 2970 | CG15797-RB | 126..1030 | 13..917 | 4510 | 99.9 | Plus |
| ric8a-RA | 2438 | CG15797-RA | 126..1030 | 13..917 | 4510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9256441..9257262 | 96..917 | 4095 | 99.9 | Plus |
| X | 23542271 | X | 9260754..9260868 | 803..917 | 545 | 98.3 | Plus |
| X | 23542271 | X | 9260652..9260762 | 605..715 | 465 | 94.6 | Plus |
| X | 23542271 | X | 9256293..9256377 | 13..97 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:34:57 has no hits.
BO07091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:00 Download gff for
BO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:57 Download gff for
BO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15797-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:25 Download gff for
BO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 126..1030 | 13..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:15:02 Download gff for
BO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 126..1030 | 13..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:15:02 Download gff for
BO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9256293..9256377 | 13..97 | 100 | -> | Plus |
| X | 9256443..9257262 | 98..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:25 Download gff for
BO07091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9150326..9150410 | 13..97 | 100 | -> | Plus |
| arm_X | 9150476..9151295 | 98..917 | 99 | | Plus |
BO07091.complete Sequence
1753 bp assembled on 2008-08-14
GenBank Submission: FJ630661
> BO07091.complete
GAAGTTATCAGTCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCA
AGGAGGCGGACCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAAT
GCGGATCTGCTGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGA
ACTGTGGCTGGCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATC
TGCATACGCAGTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTC
AGCCTGCAGACGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCT
GGCTAGGATTGAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGC
TTAAACAGGAGGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAA
TCGGAGGTGATTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCA
GAGCTCCGACTGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAA
TCCTGAAGAGGGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTAC
TACGACATGAAGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCG
CTCTCGCCTCCAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGC
TGGACGACAAGCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATC
ATCTGCGAACTGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAA
GAGCCCCAACGAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGA
GGGAGCTACTCCTGCGTTTCGGCGACTTGGCCACAGAAAAGGATCGCGCC
GTCGTCACACACGCCATCAATCTGCTGACAAACATCTCCGGCAGCTGCCT
GACAGAACTCACCCTGCGTTGCTCCAATGCCGAGTTGGAGTCGCACAAGG
AAAGAGAGCAGGACAACGAGAAGGAAAAAGATACAGAAGCTGGAGCGGGA
GCCAAACCCCGTGAGTGCTGCTCGCAGTGCTTCGAAAAGCGCAATGTTCG
GAGTCTGGACGTGCTACTCCGCTACCTAAGGCAATCTCTGGCCCAACAGG
AGGCCGAGGCTAGCTCGCATGAGTTGCTTTCCCCAGTGCTGACCGTGCTG
GTGAAATGTGCGCGCAGCGATCGAGTTATGCGTCACTATCTACGCCAGGA
GATTCTGCCGCCGCTGCGGGACGTTAGTCAACGACCTGAGGTTGGTCAGG
AGCTGCGCAATCATCTGTGTCGGTTCCTTACACTGCCCGCGATGATCCTA
CGAGATCTGTCCGCCGAACTGCTGTTCGTACTGTGCAAAGAAAATGTCGG
CAGGATGATCAAATATACGGGCTATGGCAACGCAGCCGGGCTCTTTGCCA
AGCGGGGTATACTCGACTGCCGGCGAGTGGAGGGCACCGACTACTCCTCC
GACAGCGAGGACAGCGACACCGAGGAGTACAAGCAGCAGCAGCAGGGCAT
CAATCCAGTCCTTGGCTGCGTAGAGCCGCGCAGCAAGTCGCATCTGGACG
ACATAAGCGAAGAGCAGAAGGAATACGAGGCTATGCAGCTGGTCAATCTC
ATCGAACAGCTGCGTCAGGGCGGGATCGTAAAGCCGGCGATGATAGACAA
GGACGGGCGCCCGCAGCCGCTGGAACACATCCTTCAGCTGCAGGAGGAGC
TGCCGCAGCAGCAGCTCGACCAGAAGCGGAAAACCGCAAGCTTTCTAGAC
CAT
BO07091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ric8a-RB | 1722 | CG15797-PB | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| ric8a-RA | 1722 | CG15797-PA | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ric8a-RB | 2970 | CG15797-RB | 126..1848 | 13..1735 | 8615 | 100 | Plus |
| ric8a-RA | 2438 | CG15797-RA | 126..1848 | 13..1735 | 8615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9256441..9258080 | 96..1735 | 8200 | 100 | Plus |
| X | 23542271 | X | 9260754..9261235 | 803..1284 | 2335 | 99 | Plus |
| X | 23542271 | X | 9260652..9260762 | 605..715 | 465 | 94.6 | Plus |
| X | 23542271 | X | 9256293..9256377 | 13..97 | 425 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2387 | 1652..1739 | 122 | 61.4 | Plus |
BO07091.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:02 Download gff for
BO07091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 103..1830 | 13..1741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:24 Download gff for
BO07091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 130..1848 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:15 Download gff for
BO07091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 107..1825 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:27 Download gff for
BO07091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ric8a-RA | 130..1848 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:27 Download gff for
BO07091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9256297..9256377 | 17..97 | 100 | -> | Plus |
| X | 9256443..9258080 | 98..1737 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:24 Download gff for
BO07091.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9150330..9150410 | 17..97 | 100 | -> | Plus |
| arm_X | 9150476..9152113 | 98..1737 | 99 | | Plus |
BO07091.pep Sequence
Translation from 16 to 1753
> BO07091.pep
METEHLKRLEAKEADHIPAILDEFNTKNADLLVFDSFRTDNLWHELWLAI
FGILDDQRLSHLHTQCLNTVRILTRDEFSLQTNYIEQEVNTLLKLARIEA
GSLKLPATPDELKQEEREEPQLEPSQAQSEVIAEALKCLCNLVYQSSDCR
RQCLRQHCLDAILKRVASSMRHPCALEYYDMKLLFLLTALEPAARSRLQI
DLNGLTYMTKWLDDKLGEDSVGEEQLNIICELLKVMFNVTSAPDKSPNEY
EIQSLHLTGVLRELLLRFGDLATEKDRAVVTHAINLLTNISGSCLTELTL
RCSNAELESHKEREQDNEKEKDTEAGAGAKPRECCSQCFEKRNVRSLDVL
LRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPPL
RDVSQRPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKY
TGYGNAAGLFAKRGILDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLG
CVEPRSKSHLDDISEEQKEYEAMQLVNLIEQLRQGGIVKPAMIDKDGRPQ
PLEHILQLQEELPQQQLDQKRKTASFLDH
BO07091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ric8a-PB | 573 | CG15797-PB | 1..573 | 1..573 | 2948 | 100 | Plus |
| ric8a-PA | 573 | CG15797-PA | 1..573 | 1..573 | 2948 | 100 | Plus |
