Clone BO07096 Report

Search the DGRC for BO07096

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:70
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCatsup-RA
Protein status:BO07096.pep: validated full length
Sequenced Size:1381

Clone Sequence Records

BO07096.3prime Sequence

854 bp (806 high quality bases) assembled on 2005-12-03

> BO07096.3prime
ATGGTCTAGAAAGCTTGCCTCGAACTTGGCGATAACGATCATTAGGGCTA
CGCCGGTTAGCAGCGCAAAGATTTCCTTCAGCGACTGTTTCAGTTTCGTA
GACTCCTCAAGCAGCTCCGGCAGGACACTCACTGTTGCGATGTAAATAAA
ACCGCCGGCTGTGAAGGGCAAGACCCATGGGGCCGATCCGTCCCCGCCTC
CAGCTCCCAGAAGAGCTAGCGCTGTGCCCGCCAAAGCTCCGAGCGCTGTG
ACGAGCTGCAGAAGCATTGCCTTTCGCCTGGAACAGCCAGACTTTATAAG
AATGGCAAAGTCACCAATCTCATGGGGCACTTCGTGCAGCAGAATAGTGA
TAGTGGTCACAATGCCAATGCTGTTGCCCGCCAAATAGGAGGCGCCGATG
GCCAGGCCATCGGTGAAGTTGTGAGCAAAGTCCGCCGCCAAATTCAAGTA
GCCGGAAATCTCCACTTCGCCTTCTGGCTCCGCTTCTGGTTTCTTGGACT
TGATCTTGGCTGGCTTTGCCGGTTTGTCTCCATCTCCGCTGTCTTCTTTG
TCAGAGGACTTTTTCTTAGCAGGCACTGGTTTTGGCTTTGGTGCTCCATG
GCTGTGGCCGTGTCCTCCATGACCGCCCTTTAGAATGCGTACCAGTTTCT
CCACTGAAAGGAAGGCAATGATTCCTCCAAGGACCCACAGACCAATGCTC
ATATCGTGGCTGTGACCATGTTCATGCTCCTCGCCATCATGATGATGATG
GTGATCATGGCCGTGATCGTGGCCGTGTTCTCCATGACTGTGTGGATGCG
TGGCATGAGGAATCAAGTGCAGAAAGGCATCACCCAACAAACCGCCAGAA
GCAA

BO07096.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10449-PA 1350 Catsup-RA 512..1347 854..19 4180 100 Minus
CG15022-PA 888 CG15022-RA 87..113 772..746 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1698 CG10449-RA 596..1431 854..19 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042512..19043347 854..19 4180 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:16:48 has no hits.

BO07096.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:08 Download gff for BO07096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 514..1350 15..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:08 Download gff for BO07096.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 514..1350 15..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:34 Download gff for BO07096.3prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 598..1434 15..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:11 Download gff for BO07096.3prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 598..1434 15..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:11 Download gff for BO07096.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19042514..19043350 15..852 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:34 Download gff for BO07096.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19042514..19043350 15..852 99   Minus

BO07096.5prime Sequence

892 bp (790 high quality bases) assembled on 2005-12-03

> BO07096.5prime
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGCAAAGCCAGCCAAGATCAAGTCCAAAAAA

BO07096.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10449-PA 1350 Catsup-RA 1..872 17..888 4360 100 Plus
CG15022-PA 888 CG15022-RA 87..113 610..636 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1698 CG10449-RA 85..960 17..892 4365 99.9 Plus
Catsup-RA 1698 CG10449-RA 273..363 256..352 250 84.5 Plus
Catsup-RA 1698 CG10449-RA 324..420 205..295 250 84.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042379..19042876 395..892 2475 99.8 Plus
2L 23513712 2L 19041946..19042324 17..395 1895 100 Plus
2L 23513712 2L 19042162..19042224 290..352 240 92.1 Plus
2L 23513712 2L 19042219..19042281 233..295 240 92.1 Plus
Blast to na_te.dros performed on 2015-02-12 07:08:44 has no hits.

BO07096.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:09 Download gff for BO07096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:09 Download gff for BO07096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10449-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:59 Download gff for BO07096.5prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..954 17..886 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:31 Download gff for BO07096.5prime
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..954 17..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:31 Download gff for BO07096.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19041946..19042324 17..395 100 -> Plus
2L 19042380..19042870 396..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:59 Download gff for BO07096.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19041946..19042324 17..395 100 -> Plus
arm_2L 19042380..19042870 396..886 100   Plus

BO07096.complete Sequence

1381 bp (1381 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630662

> BO07096.complete
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGCAAAGCCAGCCAAGATCAAGTCCAAGAAACCAGAAGC
GGAGCCAGAAGGCGAAGTGGAGATTTCCGGCTACTTGAATTTGGCGGCGG
ACTTTGCTCACAACTTCACCGATGGCCTGGCCATCGGCGCCTCCTATTTG
GCGGGCAACAGCATTGGCATTGTGACCACTATCACTATTCTGCTGCACGA
AGTGCCCCATGAGATTGGTGACTTTGCCATTCTTATAAAGTCTGGCTGTT
CCAGGCGAAAGGCAATGCTTCTGCAGCTCGTCACAGCGCTCGGAGCTTTG
GCGGGCACAGCGCTAGCTCTTCTGGGAGCTGGAGGCGGGGACGGATCGGC
CCCATGGGTCTTGCCCTTCACAGCCGGCGGTTTTATTTACATCGCAACAG
TGAGTGTCCTGCCGGAGCTGCTTGAGGAGTCTACGAAACTGAAACAGTCG
CTGAAGGAAATCTTTGCGCTGCTAACCGGCGTAGCCCTAATGATCGTTAT
CGCCAAGTTCGAGGCAAGCTTTCTAGACCAT

BO07096.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1350 CG10449-PA 1..1347 17..1363 6735 100 Plus
Catsup-RA 1350 CG10449-PA 217..279 290..352 240 92.1 Plus
Catsup-RA 1350 CG10449-PA 274..336 233..295 240 92.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1698 CG10449-RA 85..1431 17..1363 6735 100 Plus
Catsup-RA 1698 CG10449-RA 301..363 290..352 240 92.1 Plus
Catsup-RA 1698 CG10449-RA 358..420 233..295 240 92.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042379..19043347 395..1363 4845 100 Plus
2L 23513712 2L 19041946..19042324 17..395 1895 100 Plus
2L 23513712 2L 19042162..19042224 290..352 240 92.1 Plus
2L 23513712 2L 19042219..19042281 233..295 240 92.1 Plus
Blast to na_te.dros performed on 2014-11-27 07:01:26 has no hits.

BO07096.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:18 Download gff for BO07096.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 1..1350 17..1367 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:48 Download gff for BO07096.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 233..1582 17..1367 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:40 Download gff for BO07096.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..1431 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:18 Download gff for BO07096.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 233..1582 17..1367 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:01 Download gff for BO07096.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 85..1431 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:01 Download gff for BO07096.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19041946..19042324 17..395 100 -> Plus
2L 19042380..19043347 396..1365 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:40 Download gff for BO07096.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19041946..19042324 17..395 100 -> Plus
arm_2L 19042380..19043347 396..1365 99   Plus

BO07096.pep Sequence

Translation from 16 to 1381

> BO07096.pep
MAKQVADYQCSKLQLYQKLALVVILGAVLFSLPALCAGQGNPSFKYSREA
NENFDPQKAPRAEHHHHHDHDHDHGHHHHGHDHDHDHDHGHDHGHHHHGH
DHDHDHDHGHHHHGHDERHTKAKPDLDMSTIWLHSIGSTLLISAAPFVLL
YIIPLDNSEAMKPRLKVLLAFASGGLLGDAFLHLIPHATHPHSHGEHGHD
HGHDHHHHHDGEEHEHGHSHDMSIGLWVLGGIIAFLSVEKLVRILKGGHG
GHGHSHGAPKPKPVPAKKKSSDKEDSGDGDKPAKPAKIKSKKPEAEPEGE
VEISGYLNLAADFAHNFTDGLAIGASYLAGNSIGIVTTITILLHEVPHEI
GDFAILIKSGCSRRKAMLLQLVTALGALAGTALALLGAGGGDGSAPWVLP
FTAGGFIYIATVSVLPELLEESTKLKQSLKEIFALLTGVALMIVIAKFEA
SFLDH

BO07096.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-PA 449 CG10449-PA 1..449 1..449 2446 100 Plus
Zip99C-PJ 355 CG7816-PJ 34..349 130..445 461 34.9 Plus
Zip99C-PI 355 CG7816-PI 34..349 130..445 461 34.9 Plus
Zip99C-PH 355 CG7816-PH 34..349 130..445 461 34.9 Plus
Zip99C-PC 355 CG7816-PC 34..349 130..445 461 34.9 Plus