Clone Sequence Records
BO07096.3prime Sequence
854 bp (806 high quality bases) assembled on 2005-12-03
> BO07096.3prime
ATGGTCTAGAAAGCTTGCCTCGAACTTGGCGATAACGATCATTAGGGCTA
CGCCGGTTAGCAGCGCAAAGATTTCCTTCAGCGACTGTTTCAGTTTCGTA
GACTCCTCAAGCAGCTCCGGCAGGACACTCACTGTTGCGATGTAAATAAA
ACCGCCGGCTGTGAAGGGCAAGACCCATGGGGCCGATCCGTCCCCGCCTC
CAGCTCCCAGAAGAGCTAGCGCTGTGCCCGCCAAAGCTCCGAGCGCTGTG
ACGAGCTGCAGAAGCATTGCCTTTCGCCTGGAACAGCCAGACTTTATAAG
AATGGCAAAGTCACCAATCTCATGGGGCACTTCGTGCAGCAGAATAGTGA
TAGTGGTCACAATGCCAATGCTGTTGCCCGCCAAATAGGAGGCGCCGATG
GCCAGGCCATCGGTGAAGTTGTGAGCAAAGTCCGCCGCCAAATTCAAGTA
GCCGGAAATCTCCACTTCGCCTTCTGGCTCCGCTTCTGGTTTCTTGGACT
TGATCTTGGCTGGCTTTGCCGGTTTGTCTCCATCTCCGCTGTCTTCTTTG
TCAGAGGACTTTTTCTTAGCAGGCACTGGTTTTGGCTTTGGTGCTCCATG
GCTGTGGCCGTGTCCTCCATGACCGCCCTTTAGAATGCGTACCAGTTTCT
CCACTGAAAGGAAGGCAATGATTCCTCCAAGGACCCACAGACCAATGCTC
ATATCGTGGCTGTGACCATGTTCATGCTCCTCGCCATCATGATGATGATG
GTGATCATGGCCGTGATCGTGGCCGTGTTCTCCATGACTGTGTGGATGCG
TGGCATGAGGAATCAAGTGCAGAAAGGCATCACCCAACAAACCGCCAGAA
GCAA
BO07096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10449-PA | 1350 | Catsup-RA | 512..1347 | 854..19 | 4180 | 100 | Minus |
CG15022-PA | 888 | CG15022-RA | 87..113 | 772..746 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1698 | CG10449-RA | 596..1431 | 854..19 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19042512..19043347 | 854..19 | 4180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:16:48 has no hits.
BO07096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:08 Download gff for
BO07096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 514..1350 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:08 Download gff for
BO07096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 514..1350 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:34 Download gff for
BO07096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 598..1434 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:11 Download gff for
BO07096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 598..1434 | 15..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:11 Download gff for
BO07096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19042514..19043350 | 15..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:34 Download gff for
BO07096.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19042514..19043350 | 15..852 | 99 | | Minus |
BO07096.5prime Sequence
892 bp (790 high quality bases) assembled on 2005-12-03
> BO07096.5prime
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGCAAAGCCAGCCAAGATCAAGTCCAAAAAA
BO07096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10449-PA | 1350 | Catsup-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG15022-PA | 888 | CG15022-RA | 87..113 | 610..636 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1698 | CG10449-RA | 85..960 | 17..892 | 4365 | 99.9 | Plus |
Catsup-RA | 1698 | CG10449-RA | 273..363 | 256..352 | 250 | 84.5 | Plus |
Catsup-RA | 1698 | CG10449-RA | 324..420 | 205..295 | 250 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19042379..19042876 | 395..892 | 2475 | 99.8 | Plus |
2L | 23513712 | 2L | 19041946..19042324 | 17..395 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 19042162..19042224 | 290..352 | 240 | 92.1 | Plus |
2L | 23513712 | 2L | 19042219..19042281 | 233..295 | 240 | 92.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:08:44 has no hits.
BO07096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:09 Download gff for
BO07096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:09 Download gff for
BO07096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10449-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:34:59 Download gff for
BO07096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..954 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:31 Download gff for
BO07096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..954 | 17..886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:31 Download gff for
BO07096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
2L | 19042380..19042870 | 396..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:34:59 Download gff for
BO07096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
arm_2L | 19042380..19042870 | 396..886 | 100 | | Plus |
BO07096.complete Sequence
1381 bp (1381 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630662
> BO07096.complete
GAAGTTATCAGTCGACATGGCCAAACAAGTGGCTGATTACCAGTGCAGTA
AGCTCCAGTTGTACCAAAAGCTGGCACTGGTCGTAATCCTGGGAGCAGTG
CTTTTCTCGCTCCCGGCGTTGTGCGCCGGCCAGGGCAATCCCAGTTTCAA
ATACTCGCGGGAAGCCAACGAAAACTTCGATCCGCAGAAGGCTCCACGGG
CGGAGCACCATCATCATCATGATCATGACCACGATCATGGACACCACCAC
CACGGGCACGATCATGATCATGACCACGACCACGGGCATGATCATGGACA
CCATCATCACGGGCACGATCATGATCATGACCACGACCACGGACACCATC
ATCACGGGCACGATGAAAGGCACACCAAGGCAAAGCCGGATTTGGATATG
AGCACCATTTGGTTGCACTCGATCGGCTCAACTCTTCTTATCAGTGCCGC
TCCCTTCGTGCTGCTGTATATCATTCCCCTAGACAACAGTGAGGCGATGA
AGCCGCGTCTCAAAGTGCTTCTGGCCTTTGCTTCTGGCGGTTTGTTGGGT
GATGCCTTTCTGCACTTGATTCCTCATGCCACGCATCCACACAGTCATGG
AGAACACGGCCACGATCACGGCCATGATCACCATCATCATCATGATGGCG
AGGAGCATGAACATGGTCACAGCCACGATATGAGCATTGGTCTGTGGGTC
CTTGGAGGAATCATTGCCTTCCTTTCAGTGGAGAAACTGGTACGCATTCT
AAAGGGCGGTCATGGAGGACACGGCCACAGCCATGGAGCACCAAAGCCAA
AACCAGTGCCTGCTAAGAAAAAGTCCTCTGACAAAGAAGACAGCGGAGAT
GGAGACAAACCGGCAAAGCCAGCCAAGATCAAGTCCAAGAAACCAGAAGC
GGAGCCAGAAGGCGAAGTGGAGATTTCCGGCTACTTGAATTTGGCGGCGG
ACTTTGCTCACAACTTCACCGATGGCCTGGCCATCGGCGCCTCCTATTTG
GCGGGCAACAGCATTGGCATTGTGACCACTATCACTATTCTGCTGCACGA
AGTGCCCCATGAGATTGGTGACTTTGCCATTCTTATAAAGTCTGGCTGTT
CCAGGCGAAAGGCAATGCTTCTGCAGCTCGTCACAGCGCTCGGAGCTTTG
GCGGGCACAGCGCTAGCTCTTCTGGGAGCTGGAGGCGGGGACGGATCGGC
CCCATGGGTCTTGCCCTTCACAGCCGGCGGTTTTATTTACATCGCAACAG
TGAGTGTCCTGCCGGAGCTGCTTGAGGAGTCTACGAAACTGAAACAGTCG
CTGAAGGAAATCTTTGCGCTGCTAACCGGCGTAGCCCTAATGATCGTTAT
CGCCAAGTTCGAGGCAAGCTTTCTAGACCAT
BO07096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1350 | CG10449-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Catsup-RA | 1350 | CG10449-PA | 217..279 | 290..352 | 240 | 92.1 | Plus |
Catsup-RA | 1350 | CG10449-PA | 274..336 | 233..295 | 240 | 92.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-RA | 1698 | CG10449-RA | 85..1431 | 17..1363 | 6735 | 100 | Plus |
Catsup-RA | 1698 | CG10449-RA | 301..363 | 290..352 | 240 | 92.1 | Plus |
Catsup-RA | 1698 | CG10449-RA | 358..420 | 233..295 | 240 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19042379..19043347 | 395..1363 | 4845 | 100 | Plus |
2L | 23513712 | 2L | 19041946..19042324 | 17..395 | 1895 | 100 | Plus |
2L | 23513712 | 2L | 19042162..19042224 | 290..352 | 240 | 92.1 | Plus |
2L | 23513712 | 2L | 19042219..19042281 | 233..295 | 240 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:26 has no hits.
BO07096.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:18 Download gff for
BO07096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 1..1350 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:48 Download gff for
BO07096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 233..1582 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:40 Download gff for
BO07096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..1431 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:18 Download gff for
BO07096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 233..1582 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:01 Download gff for
BO07096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Catsup-RA | 85..1431 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:01 Download gff for
BO07096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
2L | 19042380..19043347 | 396..1365 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:40 Download gff for
BO07096.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19041946..19042324 | 17..395 | 100 | -> | Plus |
arm_2L | 19042380..19043347 | 396..1365 | 99 | | Plus |
BO07096.pep Sequence
Translation from 16 to 1381
> BO07096.pep
MAKQVADYQCSKLQLYQKLALVVILGAVLFSLPALCAGQGNPSFKYSREA
NENFDPQKAPRAEHHHHHDHDHDHGHHHHGHDHDHDHDHGHDHGHHHHGH
DHDHDHDHGHHHHGHDERHTKAKPDLDMSTIWLHSIGSTLLISAAPFVLL
YIIPLDNSEAMKPRLKVLLAFASGGLLGDAFLHLIPHATHPHSHGEHGHD
HGHDHHHHHDGEEHEHGHSHDMSIGLWVLGGIIAFLSVEKLVRILKGGHG
GHGHSHGAPKPKPVPAKKKSSDKEDSGDGDKPAKPAKIKSKKPEAEPEGE
VEISGYLNLAADFAHNFTDGLAIGASYLAGNSIGIVTTITILLHEVPHEI
GDFAILIKSGCSRRKAMLLQLVTALGALAGTALALLGAGGGDGSAPWVLP
FTAGGFIYIATVSVLPELLEESTKLKQSLKEIFALLTGVALMIVIAKFEA
SFLDH
BO07096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Catsup-PA | 449 | CG10449-PA | 1..449 | 1..449 | 2446 | 100 | Plus |
Zip99C-PJ | 355 | CG7816-PJ | 34..349 | 130..445 | 461 | 34.9 | Plus |
Zip99C-PI | 355 | CG7816-PI | 34..349 | 130..445 | 461 | 34.9 | Plus |
Zip99C-PH | 355 | CG7816-PH | 34..349 | 130..445 | 461 | 34.9 | Plus |
Zip99C-PC | 355 | CG7816-PC | 34..349 | 130..445 | 461 | 34.9 | Plus |