Clone Sequence Records
BO07110.3prime Sequence
731 bp (730 high quality bases) assembled on 2005-12-04
> BO07110.3prime
ATGGTCTAGAAAGCTTGCTTTGTTCTGTTCCGTGTCGGAGGATGCGTTCG
AAACGATCGGCGGGGTCGACCTGCCGTCGTACTGCTGCTGATTCACCAAC
CGCTGTCGCTCCAAGTACATGGAAACCTTGATGTTGCGCACCTGGTGGTT
GTCGATCAGTTTCAGAAGGGCGATGACGGCGATGCCAACGGAAATTGCGA
ATGAACCCCATGCGCCAAACTGAGTGGTTCCCATTTCAATGTAAAATCCG
GAGGTGTTAATTTTTTCCGTGTCGCCGTGGATAATGTTCTGACCGGCGGA
AATGGCACAGGATGGGAATCTCTCGGTCATGGAATCGCACCAGACAATAA
AGCCCAGGGTAATGAAAATAGCCGACAAAATGGACATAGCCAGCATCCAA
ATGCCCAGAACGACGTCAATGAACAGAGCTATAAACGAGGCCTCCTCCTT
CATGCGGGCGTATCTATAAATCTGCACCACCGAAATAATTAGCAGGAAGA
ACCCGGTAATCAGGGGAAAGTTGCAGAAGCCATTGGAAGCCCACTGGACA
TCGAACATGCCGTCCTCCTCCCGCCATTTGCCAGTTGTAAAGAGCAGGCA
GTGGCCACAGAATTGGTCGAGGTTTATAAACAATGGCACGACGATGCACA
GCGACAGGATAAACAGGATGACATGGCCAGCTATCTGGCTTAGCTGCAGC
ACGTTGGCCAAAGCCATGTCGACTGATAACT
BO07110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-PA | 702 | CG13603-RA | 1..699 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 1046 | CG13603-RA | 85..783 | 717..19 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23985856..23986103 | 220..467 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 23985476..23985679 | 19..222 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 23986166..23986310 | 464..608 | 725 | 100 | Plus |
3R | 32079331 | 3R | 23986376..23986485 | 608..717 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:17:02 has no hits.
BO07110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:29 Download gff for
BO07110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:34 Download gff for
BO07110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 18..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:27 Download gff for
BO07110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..788 | 11..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:24 Download gff for
BO07110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..788 | 11..724 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:24 Download gff for
BO07110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23985471..23985676 | 11..219 | 98 | <- | Plus |
3R | 23985856..23986099 | 220..463 | 100 | <- | Plus |
3R | 23986166..23986309 | 464..607 | 100 | <- | Plus |
3R | 23986376..23986491 | 608..724 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:27 Download gff for
BO07110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19811193..19811398 | 11..219 | 98 | <- | Plus |
arm_3R | 19811888..19812031 | 464..607 | 100 | <- | Plus |
arm_3R | 19812098..19812213 | 608..724 | 97 | | Plus |
arm_3R | 19811578..19811821 | 220..463 | 100 | <- | Plus |
BO07110.5prime Sequence
731 bp (730 high quality bases) assembled on 2005-12-03
> BO07110.5prime
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAAGCAAGCTTTCTAGACC
BO07110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-PA | 702 | CG13603-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 1046 | CG13603-RA | 85..783 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23985856..23986103 | 514..267 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 23985476..23985679 | 715..512 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 23986166..23986310 | 270..126 | 725 | 100 | Minus |
3R | 32079331 | 3R | 23986376..23986485 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:01:58 has no hits.
BO07110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:30 Download gff for
BO07110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:35 Download gff for
BO07110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-PA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:01 Download gff for
BO07110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..788 | 10..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:49 Download gff for
BO07110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..788 | 10..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:49 Download gff for
BO07110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23985471..23985676 | 515..723 | 98 | <- | Minus |
3R | 23985856..23986099 | 271..514 | 100 | <- | Minus |
3R | 23986166..23986309 | 127..270 | 100 | <- | Minus |
3R | 23986376..23986491 | 10..126 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:01 Download gff for
BO07110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19811193..19811398 | 515..723 | 98 | <- | Minus |
arm_3R | 19811578..19811821 | 271..514 | 100 | <- | Minus |
arm_3R | 19811888..19812031 | 127..270 | 100 | <- | Minus |
arm_3R | 19812098..19812213 | 10..126 | 97 | | Minus |
BO07110.complete Sequence
733 bp (733 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630667
> BO07110.complete
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAAGCAAGCTTTCTAGACCAT
BO07110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 702 | CG13603-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-RA | 1046 | CG13603-RA | 85..783 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23985856..23986103 | 514..267 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 23985476..23985679 | 715..512 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 23986166..23986310 | 270..126 | 725 | 100 | Minus |
3R | 32079331 | 3R | 23986376..23986485 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:47:35 has no hits.
BO07110.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:55 Download gff for
BO07110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 1..702 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:00 Download gff for
BO07110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..788 | 10..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:53 Download gff for
BO07110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 85..783 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:56 Download gff for
BO07110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 79..788 | 10..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:00 Download gff for
BO07110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13603-RA | 85..783 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:00 Download gff for
BO07110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23986376..23986485 | 17..126 | 100 | | Minus |
3R | 23985474..23985676 | 515..717 | 99 | <- | Minus |
3R | 23985856..23986099 | 271..514 | 100 | <- | Minus |
3R | 23986166..23986309 | 127..270 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:53 Download gff for
BO07110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19811196..19811398 | 515..717 | 99 | <- | Minus |
arm_3R | 19811578..19811821 | 271..514 | 100 | <- | Minus |
arm_3R | 19811888..19812031 | 127..270 | 100 | <- | Minus |
arm_3R | 19812098..19812207 | 17..126 | 100 | | Minus |
BO07110.pep Sequence
Translation from 16 to 733
> BO07110.pep
MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWRE
EDGMFDVQWASNGFCNFPLITGFFLLIISVVQIYRYARMKEEASFIALFI
DVVLGIWMLAMSILSAIFITLGFIVWCDSMTERFPSCAISAGQNIIHGDT
EKINTSGFYIEMGTTQFGAWGSFAISVGIAVIALLKLIDNHQVRNIKVSM
YLERQRLVNQQQYDGRSTPPIVSNASSDTEQNKASFLDH
BO07110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13603-PA | 233 | CG13603-PA | 1..233 | 1..233 | 1204 | 100 | Plus |