Clone BO07110 Report

Search the DGRC for BO07110

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG13603-RA
Protein status:BO07110.pep: validated full length
Sequenced Size:733

Clone Sequence Records

BO07110.3prime Sequence

731 bp (730 high quality bases) assembled on 2005-12-04

> BO07110.3prime
ATGGTCTAGAAAGCTTGCTTTGTTCTGTTCCGTGTCGGAGGATGCGTTCG
AAACGATCGGCGGGGTCGACCTGCCGTCGTACTGCTGCTGATTCACCAAC
CGCTGTCGCTCCAAGTACATGGAAACCTTGATGTTGCGCACCTGGTGGTT
GTCGATCAGTTTCAGAAGGGCGATGACGGCGATGCCAACGGAAATTGCGA
ATGAACCCCATGCGCCAAACTGAGTGGTTCCCATTTCAATGTAAAATCCG
GAGGTGTTAATTTTTTCCGTGTCGCCGTGGATAATGTTCTGACCGGCGGA
AATGGCACAGGATGGGAATCTCTCGGTCATGGAATCGCACCAGACAATAA
AGCCCAGGGTAATGAAAATAGCCGACAAAATGGACATAGCCAGCATCCAA
ATGCCCAGAACGACGTCAATGAACAGAGCTATAAACGAGGCCTCCTCCTT
CATGCGGGCGTATCTATAAATCTGCACCACCGAAATAATTAGCAGGAAGA
ACCCGGTAATCAGGGGAAAGTTGCAGAAGCCATTGGAAGCCCACTGGACA
TCGAACATGCCGTCCTCCTCCCGCCATTTGCCAGTTGTAAAGAGCAGGCA
GTGGCCACAGAATTGGTCGAGGTTTATAAACAATGGCACGACGATGCACA
GCGACAGGATAAACAGGATGACATGGCCAGCTATCTGGCTTAGCTGCAGC
ACGTTGGCCAAAGCCATGTCGACTGATAACT

BO07110.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 702 CG13603-RA 1..699 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 1046 CG13603-RA 85..783 717..19 3495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23985856..23986103 220..467 1240 100 Plus
3R 32079331 3R 23985476..23985679 19..222 1020 100 Plus
3R 32079331 3R 23986166..23986310 464..608 725 100 Plus
3R 32079331 3R 23986376..23986485 608..717 550 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:17:02 has no hits.

BO07110.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:29 Download gff for BO07110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:34 Download gff for BO07110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 18..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:27 Download gff for BO07110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..788 11..724 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:31:24 Download gff for BO07110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..788 11..724 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:31:24 Download gff for BO07110.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23985471..23985676 11..219 98 <- Plus
3R 23985856..23986099 220..463 100 <- Plus
3R 23986166..23986309 464..607 100 <- Plus
3R 23986376..23986491 608..724 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:27 Download gff for BO07110.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19811193..19811398 11..219 98 <- Plus
arm_3R 19811888..19812031 464..607 100 <- Plus
arm_3R 19812098..19812213 608..724 97   Plus
arm_3R 19811578..19811821 220..463 100 <- Plus

BO07110.5prime Sequence

731 bp (730 high quality bases) assembled on 2005-12-03

> BO07110.5prime
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAAGCAAGCTTTCTAGACC

BO07110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 702 CG13603-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 1046 CG13603-RA 85..783 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23985856..23986103 514..267 1240 100 Minus
3R 32079331 3R 23985476..23985679 715..512 1020 100 Minus
3R 32079331 3R 23986166..23986310 270..126 725 100 Minus
3R 32079331 3R 23986376..23986485 126..17 550 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:01:58 has no hits.

BO07110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:30 Download gff for BO07110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:35 Download gff for BO07110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-PA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:01 Download gff for BO07110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..788 10..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:49 Download gff for BO07110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..788 10..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:49 Download gff for BO07110.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23985471..23985676 515..723 98 <- Minus
3R 23985856..23986099 271..514 100 <- Minus
3R 23986166..23986309 127..270 100 <- Minus
3R 23986376..23986491 10..126 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:01 Download gff for BO07110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19811193..19811398 515..723 98 <- Minus
arm_3R 19811578..19811821 271..514 100 <- Minus
arm_3R 19811888..19812031 127..270 100 <- Minus
arm_3R 19812098..19812213 10..126 97   Minus

BO07110.complete Sequence

733 bp (733 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630667

> BO07110.complete
GAAGTTATCAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGA
TAGCTGGCCATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCA
TTGTTTATAAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAAC
TGGCAAATGGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCA
ATGGCTTCTGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATT
TCGGTGGTGCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTT
TATAGCTCTGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGT
CCATTTTGTCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGAT
TCCATGACCGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACAT
TATCCACGGCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAA
TGGGAACCACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGC
ATCGCCGTCATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAA
CATCAAGGTTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGC
AGTACGACGGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGAC
ACGGAACAGAACAAAGCAAGCTTTCTAGACCAT

BO07110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 702 CG13603-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-RA 1046 CG13603-RA 85..783 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23985856..23986103 514..267 1240 100 Minus
3R 32079331 3R 23985476..23985679 715..512 1020 100 Minus
3R 32079331 3R 23986166..23986310 270..126 725 100 Minus
3R 32079331 3R 23986376..23986485 126..17 550 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:47:35 has no hits.

BO07110.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:55 Download gff for BO07110.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 1..702 17..716 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:00 Download gff for BO07110.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..788 10..723 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:53 Download gff for BO07110.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 85..783 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:56 Download gff for BO07110.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 79..788 10..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:17:00 Download gff for BO07110.complete
Subject Subject Range Query Range Percent Splice Strand
CG13603-RA 85..783 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:17:00 Download gff for BO07110.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23986376..23986485 17..126 100   Minus
3R 23985474..23985676 515..717 99 <- Minus
3R 23985856..23986099 271..514 100 <- Minus
3R 23986166..23986309 127..270 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:53 Download gff for BO07110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19811196..19811398 515..717 99 <- Minus
arm_3R 19811578..19811821 271..514 100 <- Minus
arm_3R 19811888..19812031 127..270 100 <- Minus
arm_3R 19812098..19812207 17..126 100   Minus

BO07110.pep Sequence

Translation from 16 to 733

> BO07110.pep
MALANVLQLSQIAGHVILFILSLCIVVPLFINLDQFCGHCLLFTTGKWRE
EDGMFDVQWASNGFCNFPLITGFFLLIISVVQIYRYARMKEEASFIALFI
DVVLGIWMLAMSILSAIFITLGFIVWCDSMTERFPSCAISAGQNIIHGDT
EKINTSGFYIEMGTTQFGAWGSFAISVGIAVIALLKLIDNHQVRNIKVSM
YLERQRLVNQQQYDGRSTPPIVSNASSDTEQNKASFLDH

BO07110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13603-PA 233 CG13603-PA 1..233 1..233 1204 100 Plus