Clone Sequence Records
BO07111.3prime Sequence
845 bp (793 high quality bases) assembled on 2005-12-04
> BO07111.3prime
ATGGTCTAGAAAGCTTGCAAAGGTGCCGAATTCATAGCAGGGTTCGGCGG
CGTTGTCAGACCGGGATTGAAGCTCTGTGTCGTCATCGGTCCCGTTGAGG
GTGTGTGGCATGGATAGAATGCTCACGGATAGTTTGGCCATTTGATGGAG
TAGCACATCAATACGTTCATTCTTGAGGGCAATTGTGTTCTCCAGGTGAT
TGGCCCTCTCGGCAATGGAATTGATGTAGCGTGACTTCTCGGCACTCTCC
CTAATAGCATTGGCATAGTGTTCGTACTCGACCACTTTCTTGGATACCTT
CTTCATCTGTCCATTGACCACAACATTCACGTCCATGGTCAGCACCTGGG
GTTGACTATCGATCGAGCAGGAGCGCTCAATCACTTGGGTGAGGGATCGG
TTGAGAGTGCGTACCACAGAATTCTTGTTAGCCAACTTTTTAATCACCAC
GCTCTTTTGGGAGCTCGTTGGCGATACACTCAGACGGGGTCTTGGTCTGG
GACTAGCGCACTTGGTCACCGCGATTAGTTCATGGAACAGTGATTCTATG
GCTCCTGGCGCTGCTGACGCCAGCTGCTCCAGCTCCGAACGTGTCAAATT
GATGCCCAATTTCTTCAGTACCTTCTGATTGAAGGTCTGCCAGCTCTGGA
GTTTCAGGGCCACGCTGCTCTTGGGCGTATAGTTGTGCAGATCCACCAGA
CGAGGATGACTGCGCTTGACAATCTTTGCCACCGGCAAGACATCGGAGAA
TGAACGACGAGCTTTCAGATCCAGGATAATGCGCTGCTCCTTTAGCCACT
GGTTCAGGTCATTCTGCTGTTCGTTCTCCATGTCGACTGATAACT
BO07111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-PA | 816 | CG16719-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 1080 | CG16719-RA | 85..897 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9685255..9686067 | 831..19 | 4065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:02:26 has no hits.
BO07111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:31 Download gff for
BO07111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:36 Download gff for
BO07111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:04 Download gff for
BO07111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..901 | 13..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:45 Download gff for
BO07111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..901 | 13..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:45 Download gff for
BO07111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9685252..9686071 | 13..838 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:04 Download gff for
BO07111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9678352..9679171 | 13..838 | 99 | | Minus |
BO07111.5prime Sequence
801 bp (800 high quality bases) assembled on 2005-12-03
> BO07111.5prime
GAAGTTATCAGTCGACATGGAGAACGAACAGCAGAATGACCTGAACCAGT
GGCTAAAGGAGCAGCGCATTATCCTGGATCTGAAAGCTCGTCGTTCATTC
TCCGATGTCTTGCCGGTGGCAAAGATTGTCAAGCGCAGTCATCCTCGTCT
GGTGGATCTGCACAACTATACGCCCAAGAGCAGCGTGGCCCTGAAACTCC
AGAGCTGGCAGACCTTCAATCAGAAGGTACTGAAGAAATTGGGCATCAAT
TTGACACGTTCGGAGCTGGAGCAGCTGGCGTCAGCAGCGCCAGGAGCCAT
AGAATCACTGTTCCATGAACTAATCGCGGTGACCAAGTGCGCTAGTCCCA
GACCAAGACCCCGTCTGAGTGTATCGCCAACGAGCTCCCAAAAGAGCGTG
GTGATTAAAAAGTTGGCTAACAAGAATTCTGTGGTACGCACTCTCAACCG
ATCCCTCACCCAAGTGATTGAGCGCTCCTGCTCGATCGATAGTCAACCCC
AGGTGCTGACCATGGACGTGAATGTTGTGGTCAATGGACAGATGAAGAAG
GTATCCAAGAAAGTGGTCGAGTACGAACACTATGCCAATGCTATTAGGGA
GAGTGCCGAGAAGTCACGCTACATCAATTCCATTGCCGAGAGGGCCAATC
ACCTGGAGAACACAATTGCCCTCAAGAATGAACGTATTGATGTGCTACTC
CATCAAATGGCCAAACTATCCGTGAGCATTCTATCCATGCCACACACCCT
CAACGGGACCGATGACGACACAGAGCTTCAATCCCGGTCTGACAACGCCG
C
BO07111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-PA | 816 | CG16719-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 1080 | CG16719-RA | 85..869 | 17..801 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9685255..9686039 | 17..801 | 3925 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:27:08 has no hits.
BO07111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:32 Download gff for
BO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:38 Download gff for
BO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-PA | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:30 Download gff for
BO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..869 | 10..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:12 Download gff for
BO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..869 | 10..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:12 Download gff for
BO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9685252..9686039 | 10..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:30 Download gff for
BO07111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9678352..9679139 | 10..801 | 99 | | Plus |
BO07111.complete Sequence
847 bp (847 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630668
> BO07111.complete
GAAGTTATCAGTCGACATGGAGAACGAACAGCAGAATGACCTGAACCAGT
GGCTAAAGGAGCAGCGCATTATCCTGGATCTGAAAGCTCGTCGTTCATTC
TCCGATGTCTTGCCGGTGGCAAAGATTGTCAAGCGCAGTCATCCTCGTCT
GGTGGATCTGCACAACTATACGCCCAAGAGCAGCGTGGCCCTGAAACTCC
AGAGCTGGCAGACCTTCAATCAGAAGGTACTGAAGAAATTGGGCATCAAT
TTGACACGTTCGGAGCTGGAGCAGCTGGCGTCAGCAGCGCCAGGAGCCAT
AGAATCACTGTTCCATGAACTAATCGCGGTGACCAAGTGCGCTAGTCCCA
GACCAAGACCCCGTCTGAGTGTATCGCCAACGAGCTCCCAAAAGAGCGTG
GTGATTAAAAAGTTGGCTAACAAGAATTCTGTGGTACGCACTCTCAACCG
ATCCCTCACCCAAGTGATTGAGCGCTCCTGCTCGATCGATAGTCAACCCC
AGGTGCTGACCATGGACGTGAATGTTGTGGTCAATGGACAGATGAAGAAG
GTATCCAAGAAAGTGGTCGAGTACGAACACTATGCCAATGCTATTAGGGA
GAGTGCCGAGAAGTCACGCTACATCAATTCCATTGCCGAGAGGGCCAATC
ACCTGGAGAACACAATTGCCCTCAAGAATGAACGTATTGATGTGCTACTC
CATCAAATGGCCAAACTATCCGTGAGCATTCTATCCATGCCACACACCCT
CAACGGGACCGATGACGACACAGAGCTTCAATCCCGGTCTGACAACGCCG
CCGAACCCTGCTATGAATTCGGCACCTTTGCAAGCTTTCTAGACCAT
BO07111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 816 | CG16719-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-RA | 1080 | CG16719-RA | 85..897 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9685255..9686067 | 17..829 | 4065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:08:36 has no hits.
BO07111.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:12 Download gff for
BO07111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:40 Download gff for
BO07111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..901 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:47 Download gff for
BO07111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 85..897 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:12 Download gff for
BO07111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 82..901 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:43 Download gff for
BO07111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16719-RA | 85..897 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:43 Download gff for
BO07111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9685255..9686067 | 17..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:47 Download gff for
BO07111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9678355..9679167 | 17..831 | 99 | | Plus |
BO07111.pep Sequence
Translation from 16 to 847
> BO07111.pep
MENEQQNDLNQWLKEQRIILDLKARRSFSDVLPVAKIVKRSHPRLVDLHN
YTPKSSVALKLQSWQTFNQKVLKKLGINLTRSELEQLASAAPGAIESLFH
ELIAVTKCASPRPRPRLSVSPTSSQKSVVIKKLANKNSVVRTLNRSLTQV
IERSCSIDSQPQVLTMDVNVVVNGQMKKVSKKVVEYEHYANAIRESAEKS
RYINSIAERANHLENTIALKNERIDVLLHQMAKLSVSILSMPHTLNGTDD
DTELQSRSDNAAEPCYEFGTFASFLDH
BO07111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16719-PA | 271 | CG16719-PA | 1..271 | 1..271 | 1356 | 100 | Plus |
| CG12395-PA | 254 | CG12395-PA | 9..208 | 1..233 | 338 | 36.5 | Plus |
