Clone Sequence Records
BO07112.3prime Sequence
803 bp (761 high quality bases) assembled on 2005-12-04
> BO07112.3prime
ATGGTCTAGAAAGCTTGCAGCGCCCAGCTGCTTGTAGAGGATGGGCACAT
AGTCGTCGTACTCAGCCTGGTAGAGGTTACCGGCAATGGGATTGCCGAGG
GCGTACTTCTTGGCGAACTCGGCGATTTTGAAGCCACCGCGTCCATCTCC
GCTGTTATTGGGCAGTCGCTTCTCGTCGAATGTGAGCTTGCACCGCTGCT
CGTAGATCAGGAAAACGTAACGATGGAGTCCGGTGTCTGGTGGAGGCCCG
GATCCCACGTAGGCGGAGAGAACCTCGCCCTTGGCGACATCTCCACCGGG
TATGTTGCCCACCAGCCAATGGTGCCACTCCCTAAACTTGGGATCCTTGC
GACTGGGCGCATCCGGATCGGTCATGCAGAGGGTGTACAGCTTATTGGCG
TCCGCCTCCCATTTCACGCACGGCTCATCCTTCACCTGGGTGGGGGTCAG
GACCTGACCCGGCTTCACGACAATATCGCCGGGATATTCCACCACAGCTG
TCTGCGCCGGTGCCTTGGCGATCACATCCGGAACTACGCAGTGCTCCTCC
ATTGTTTTGCCTACTTTTTCGCAAGAATACTGCCGCTGAGATGCGATAAA
TGCAAAGATTGGTTTCGGTTCCTTGGTTAGGATAGAATTGCTAAAAGTTT
TCAGCGTTCTAATGGCGGCCGGAAAGTTGACAGCTGAATAATTGACATTC
ACACCGGTTGATCGGATGTAATCTTTTCTAAATCCATTTAAAGCGCTGCG
ATTGAGATTACGCACCACCCGGAGCCGCATACAAATCATGTCGACTGATA
ACT
BO07112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-PA | 774 | CG6180-RA | 1..771 | 789..19 | 3830 | 99.8 | Minus |
CG10298-PA | 564 | CG10298-RA | 200..239 | 374..335 | 175 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 1020 | CG6180-RA | 111..881 | 789..19 | 3840 | 99.9 | Minus |
CG10298-RA | 745 | CG10298-RA | 255..438 | 387..204 | 275 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12707771..12708541 | 789..19 | 3840 | 99.9 | Minus |
3R | 32079331 | 3R | 6343309..6343492 | 387..204 | 275 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:17:43 has no hits.
BO07112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:33 Download gff for
BO07112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 18..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:39 Download gff for
BO07112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 18..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:38 Download gff for
BO07112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 7..796 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:19 Download gff for
BO07112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 7..796 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:19 Download gff for
BO07112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12707768..12708550 | 7..796 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:38 Download gff for
BO07112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12707768..12708550 | 7..796 | 98 | | Minus |
BO07112.5prime Sequence
803 bp (797 high quality bases) assembled on 2005-12-03
> BO07112.5prime
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTGCAAGCTTTCTAG
ACC
BO07112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-PA | 774 | CG6180-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG10298-PA | 564 | CG10298-RA | 200..239 | 432..471 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 1020 | CG6180-RA | 111..881 | 17..787 | 3855 | 100 | Plus |
CG10298-RA | 745 | CG10298-RA | 255..438 | 419..602 | 275 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12707771..12708541 | 17..787 | 3855 | 100 | Plus |
3R | 32079331 | 3R | 6343309..6343492 | 419..602 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:17:29 has no hits.
BO07112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:34 Download gff for
BO07112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:40 Download gff for
BO07112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-PA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:30 Download gff for
BO07112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..799 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:04 Download gff for
BO07112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..799 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:04 Download gff for
BO07112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12707768..12708550 | 10..799 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:30 Download gff for
BO07112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12707768..12708550 | 10..799 | 98 | | Plus |
BO07112.complete Sequence
805 bp (805 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630669
> BO07112.complete
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTGCAAGCTTTCTAG
ACCAT
BO07112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 774 | CG6180-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG10298-RA | 564 | CG10298-PA | 187..370 | 419..602 | 275 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-RA | 1020 | CG6180-RA | 111..881 | 17..787 | 3855 | 100 | Plus |
CG10298-RA | 745 | CG10298-RA | 255..438 | 419..602 | 275 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12707771..12708541 | 17..787 | 3855 | 100 | Plus |
3R | 32079331 | 3R | 6343309..6343492 | 419..602 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:57:30 has no hits.
BO07112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:23 Download gff for
BO07112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 1..774 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:50 Download gff for
BO07112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..799 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:15 Download gff for
BO07112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 111..881 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:23 Download gff for
BO07112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 108..890 | 10..799 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:53 Download gff for
BO07112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6180-RA | 111..881 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:53 Download gff for
BO07112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12707771..12708541 | 17..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:15 Download gff for
BO07112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12707771..12708541 | 17..789 | 99 | | Plus |
BO07112.pep Sequence
Translation from 16 to 805
> BO07112.pep
MICMRLRVLRNLNRSALNGFRKDYIRSTGVNVNYSAVNFPAAIRTLKTFS
NSILTKEPKPIFAFIASQRQYSCEKVGKTMEEHCVVPDVIAKAPAQTAVV
EYPGDIVVKPGQVLTPTQVKDEPCVKWEADANKLYTLCMTDPDAPSRKDP
KFREWHHWLVGNIPGGDVAKGEVLSAYVGSGPPPDTGLHRYVFLIYEQRC
KLTFDEKRLPNNSGDGRGGFKIAEFAKKYALGNPIAGNLYQAEYDDYVPI
LYKQLGAASFLDH
BO07112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6180-PA | 257 | CG6180-PA | 1..257 | 1..257 | 1374 | 100 | Plus |
CG10298-PA | 187 | CG10298-PA | 10..183 | 82..255 | 572 | 59.8 | Plus |
CG17919-PA | 202 | CG17919-PA | 20..199 | 76..255 | 544 | 56.7 | Plus |
Pebp1-PA | 176 | CG18594-PA | 1..171 | 80..251 | 469 | 50 | Plus |
a5-PA | 210 | CG5430-PA | 17..209 | 67..259 | 454 | 40.4 | Plus |