Clone BO07112 Report

Search the DGRC for BO07112

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG6180-RA
Protein status:BO07112.pep: validated full length
Sequenced Size:805

Clone Sequence Records

BO07112.3prime Sequence

803 bp (761 high quality bases) assembled on 2005-12-04

> BO07112.3prime
ATGGTCTAGAAAGCTTGCAGCGCCCAGCTGCTTGTAGAGGATGGGCACAT
AGTCGTCGTACTCAGCCTGGTAGAGGTTACCGGCAATGGGATTGCCGAGG
GCGTACTTCTTGGCGAACTCGGCGATTTTGAAGCCACCGCGTCCATCTCC
GCTGTTATTGGGCAGTCGCTTCTCGTCGAATGTGAGCTTGCACCGCTGCT
CGTAGATCAGGAAAACGTAACGATGGAGTCCGGTGTCTGGTGGAGGCCCG
GATCCCACGTAGGCGGAGAGAACCTCGCCCTTGGCGACATCTCCACCGGG
TATGTTGCCCACCAGCCAATGGTGCCACTCCCTAAACTTGGGATCCTTGC
GACTGGGCGCATCCGGATCGGTCATGCAGAGGGTGTACAGCTTATTGGCG
TCCGCCTCCCATTTCACGCACGGCTCATCCTTCACCTGGGTGGGGGTCAG
GACCTGACCCGGCTTCACGACAATATCGCCGGGATATTCCACCACAGCTG
TCTGCGCCGGTGCCTTGGCGATCACATCCGGAACTACGCAGTGCTCCTCC
ATTGTTTTGCCTACTTTTTCGCAAGAATACTGCCGCTGAGATGCGATAAA
TGCAAAGATTGGTTTCGGTTCCTTGGTTAGGATAGAATTGCTAAAAGTTT
TCAGCGTTCTAATGGCGGCCGGAAAGTTGACAGCTGAATAATTGACATTC
ACACCGGTTGATCGGATGTAATCTTTTCTAAATCCATTTAAAGCGCTGCG
ATTGAGATTACGCACCACCCGGAGCCGCATACAAATCATGTCGACTGATA
ACT

BO07112.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-PA 774 CG6180-RA 1..771 789..19 3830 99.8 Minus
CG10298-PA 564 CG10298-RA 200..239 374..335 175 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 1020 CG6180-RA 111..881 789..19 3840 99.9 Minus
CG10298-RA 745 CG10298-RA 255..438 387..204 275 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12707771..12708541 789..19 3840 99.9 Minus
3R 32079331 3R 6343309..6343492 387..204 275 76.6 Minus
Blast to na_te.dros performed on 2015-02-11 23:17:43 has no hits.

BO07112.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:33 Download gff for BO07112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 18..789 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:39 Download gff for BO07112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 18..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:46:38 Download gff for BO07112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 7..796 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:19 Download gff for BO07112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 7..796 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:19 Download gff for BO07112.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12707768..12708550 7..796 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:46:38 Download gff for BO07112.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12707768..12708550 7..796 98   Minus

BO07112.5prime Sequence

803 bp (797 high quality bases) assembled on 2005-12-03

> BO07112.5prime
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTGCAAGCTTTCTAG
ACC

BO07112.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-PA 774 CG6180-RA 1..771 17..787 3855 100 Plus
CG10298-PA 564 CG10298-RA 200..239 432..471 175 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 1020 CG6180-RA 111..881 17..787 3855 100 Plus
CG10298-RA 745 CG10298-RA 255..438 419..602 275 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12707771..12708541 17..787 3855 100 Plus
3R 32079331 3R 6343309..6343492 419..602 275 76.6 Plus
Blast to na_te.dros performed on 2015-02-13 16:17:29 has no hits.

BO07112.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:34 Download gff for BO07112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:40 Download gff for BO07112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-PA 1..774 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:10:30 Download gff for BO07112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..799 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:32:04 Download gff for BO07112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..799 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:32:04 Download gff for BO07112.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12707768..12708550 10..799 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:10:30 Download gff for BO07112.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12707768..12708550 10..799 98   Plus

BO07112.complete Sequence

805 bp (805 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630669

> BO07112.complete
GAAGTTATCAGTCGACATGATTTGTATGCGGCTCCGGGTGTTGCGTAATC
TCAATCGCAGCGCTTTAAATGGATTTAGAAAAGATTACATCCGATCAACC
GGTGTGAATGTCAATTATTCAGCTGTCAACTTTCCGGCCGCCATTAGAAC
GCTGAAAACTTTTAGCAATTCTATCCTAACCAAGGAACCGAAACCAATCT
TTGCATTTATCGCATCTCAGCGGCAGTATTCTTGCGAAAAAGTAGGCAAA
ACAATGGAGGAGCACTGCGTAGTTCCGGATGTGATCGCCAAGGCACCGGC
GCAGACAGCTGTGGTGGAATATCCCGGCGATATTGTCGTGAAGCCGGGTC
AGGTCCTGACCCCCACCCAGGTGAAGGATGAGCCGTGCGTGAAATGGGAG
GCGGACGCCAATAAGCTGTACACCCTCTGCATGACCGATCCGGATGCGCC
CAGTCGCAAGGATCCCAAGTTTAGGGAGTGGCACCATTGGCTGGTGGGCA
ACATACCCGGTGGAGATGTCGCCAAGGGCGAGGTTCTCTCCGCCTACGTG
GGATCCGGGCCTCCACCAGACACCGGACTCCATCGTTACGTTTTCCTGAT
CTACGAGCAGCGGTGCAAGCTCACATTCGACGAGAAGCGACTGCCCAATA
ACAGCGGAGATGGACGCGGTGGCTTCAAAATCGCCGAGTTCGCCAAGAAG
TACGCCCTCGGCAATCCCATTGCCGGTAACCTCTACCAGGCTGAGTACGA
CGACTATGTGCCCATCCTCTACAAGCAGCTGGGCGCTGCAAGCTTTCTAG
ACCAT

BO07112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 774 CG6180-PA 1..771 17..787 3855 100 Plus
CG10298-RA 564 CG10298-PA 187..370 419..602 275 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-RA 1020 CG6180-RA 111..881 17..787 3855 100 Plus
CG10298-RA 745 CG10298-RA 255..438 419..602 275 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12707771..12708541 17..787 3855 100 Plus
3R 32079331 3R 6343309..6343492 419..602 275 76.6 Plus
Blast to na_te.dros performed on 2014-11-28 00:57:30 has no hits.

BO07112.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:39:23 Download gff for BO07112.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 1..774 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:50 Download gff for BO07112.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..799 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:15 Download gff for BO07112.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 111..881 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:39:23 Download gff for BO07112.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 108..890 10..799 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:53 Download gff for BO07112.complete
Subject Subject Range Query Range Percent Splice Strand
CG6180-RA 111..881 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:53 Download gff for BO07112.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12707771..12708541 17..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:15 Download gff for BO07112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12707771..12708541 17..789 99   Plus

BO07112.pep Sequence

Translation from 16 to 805

> BO07112.pep
MICMRLRVLRNLNRSALNGFRKDYIRSTGVNVNYSAVNFPAAIRTLKTFS
NSILTKEPKPIFAFIASQRQYSCEKVGKTMEEHCVVPDVIAKAPAQTAVV
EYPGDIVVKPGQVLTPTQVKDEPCVKWEADANKLYTLCMTDPDAPSRKDP
KFREWHHWLVGNIPGGDVAKGEVLSAYVGSGPPPDTGLHRYVFLIYEQRC
KLTFDEKRLPNNSGDGRGGFKIAEFAKKYALGNPIAGNLYQAEYDDYVPI
LYKQLGAASFLDH

BO07112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6180-PA 257 CG6180-PA 1..257 1..257 1374 100 Plus
CG10298-PA 187 CG10298-PA 10..183 82..255 572 59.8 Plus
CG17919-PA 202 CG17919-PA 20..199 76..255 544 56.7 Plus
Pebp1-PA 176 CG18594-PA 1..171 80..251 469 50 Plus
a5-PA 210 CG5430-PA 17..209 67..259 454 40.4 Plus