Clone BO07116 Report

Search the DGRC for BO07116

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG13130-RA
Protein status:BO07116.pep: validated full length
Sequenced Size:382

Clone Sequence Records

BO07116.3prime Sequence

380 bp (379 high quality bases) assembled on 2005-12-04

> BO07116.3prime
ATGGTCTAGAAAGCTTGCTCTTATTATCGATATGTTCGGGAATAAAATAT
GTATAATTTTATATATACTAACTATTATAGCAACTATATCATAACTATAA
TTTTCCCTTGGCGAATTCCAGTGTGATGGTCCTGGGATCGAAATCAGTTT
TATTTTAATACACCGAGTTAACCACAAAAGTGGCATGCCCAACTCATCTA
ATGAAAGTTTTTGCCCATTCGGGCAGATTATTTTACATTTCATTAATGTG
TCGAAAAAGGGAAATGCTTTCAATGAAAGCTGCTCCCAGGCCCAGCTGCC
TGTGTTCCCCATCATCATCATCATCATCCTCATTCTCATCGTCGCAACCA
TCATCATCATCATCATGTCGACTGATAACT

BO07116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13130-PA 351 CG13130-RA 1..348 366..19 1740 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 03:29:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9983701..9984048 19..366 1740 100 Plus
Blast to na_te.dros performed 2015-02-11 03:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 622..708 17..104 121 64 Plus

BO07116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:39 Download gff for BO07116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13130-PA 1..351 15..366 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:47 Download gff for BO07116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13130-PA 1..351 15..366 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:45 Download gff for BO07116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 456..806 15..366 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:49 Download gff for BO07116.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9983698..9984054 15..367 98 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:49 Download gff for BO07116.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9983698..9984054 15..367 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:45 Download gff for BO07116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9983698..9984054 15..367 98 -> Plus

BO07116.5prime Sequence

380 bp (379 high quality bases) assembled on 2005-12-04

> BO07116.5prime
GAAGTTATCAGTCGACATGATGATGATGATGATGGTTGCGACGATGAGAA
TGAGGATGATGATGATGATGATGGGGAACACAGGCAGCTGGGCCTGGGAG
CAGCTTTCATTGAAAGCATTTCCCTTTTTCGACACATTAATGAAATGTAA
AATAATCTGCCCGAATGGGCAAAAACTTTCATTAGATGAGTTGGGCATGC
CACTTTTGTGGTTAACTCGGTGTATTAAAATAAAACTGATTTCGATCCCA
GGACCATCACACTGGAATTCGCCAAGGGAAAATTATAGTTATGATATAGT
TGCTATAATAGTTAGTATATATAAAATTATACATATTTTATTCCCGAACA
TATCGATAATAAGAGCAAGCTTTCTAGACC

BO07116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13130-PA 351 CG13130-RA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 17:02:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9983701..9984048 364..17 1740 100 Minus
Blast to na_te.dros performed 2015-02-11 17:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 622..708 366..279 121 64 Minus

BO07116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:40 Download gff for BO07116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13130-PA 1..351 17..368 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:48 Download gff for BO07116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13130-PA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:06 Download gff for BO07116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 456..806 17..368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:46 Download gff for BO07116.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9983698..9984054 16..368 98 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:46 Download gff for BO07116.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9983698..9984054 16..368 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:06 Download gff for BO07116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9983698..9984054 16..368 98 -> Minus

BO07116.complete Sequence

382 bp (382 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630670

> BO07116.complete
GAAGTTATCAGTCGACATGATGATGATGATGATGGTTGCGACGATGAGAA
TGAGGATGATGATGATGATGATGGGGAACACAGGCAGCTGGGCCTGGGAG
CAGCTTTCATTGAAAGCATTTCCCTTTTTCGACACATTAATGAAATGTAA
AATAATCTGCCCGAATGGGCAAAAACTTTCATTAGATGAGTTGGGCATGC
CACTTTTGTGGTTAACTCGGTGTATTAAAATAAAACTGATTTCGATCCCA
GGACCATCACACTGGAATTCGCCAAGGGAAAATTATAGTTATGATATAGT
TGCTATAATAGTTAGTATATATAAAATTATACATATTTTATTCCCGAACA
TATCGATAATAAGAGCAAGCTTTCTAGACCAT

BO07116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 10:03:09 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 10:03:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9983701..9984048 364..17 1740 100 Minus
Blast to na_te.dros performed 2014-11-27 10:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 622..708 366..279 121 64 Minus

BO07116.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:31 Download gff for BO07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:02 Download gff for BO07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 370..720 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:13 Download gff for BO07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 456..803 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:31 Download gff for BO07116.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 370..720 17..368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:43 Download gff for BO07116.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9983699..9984048 17..366 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:43 Download gff for BO07116.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9983699..9984048 17..366 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:13 Download gff for BO07116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9983699..9984048 17..366 99   Minus

BO07116.pep Sequence

Translation from 16 to 382

> BO07116.pep
MMMMMMVATMRMRMMMMMMGNTGSWAWEQLSLKAFPFFDTLMKCKIICPN
GQKLSLDELGMPLLWLTRCIKIKLISIPGPSHWNSPRENYSYDIVAIIVS
IYKIIHILFPNISIIRASFLDH
Sequence BO07116.pep has no blast hits.