Clone Sequence Records
BO07117.3prime Sequence
781 bp (780 high quality bases) assembled on 2005-12-04
> BO07117.3prime
ATGGTCTAGAAAGCTTGCCACCCTGTAGAAGCACTCCCTGGCCTGTGGCT
CGCAATTGTCGTAGGGTTTCAGCATGGCATCACCGTGAGCCACCTTGCCG
CCGGCATCGATCTCGTCCAGCTCCGCATCCGGCACACAGGCGCACTGGAA
ACTCTTGTTGCCGCGACTGTACAGCTTGCGCGGATAACCGATCCAGGAGC
GCTCCTTGCCATCGCCACTGGTCGTGGTGCACCAGACGCGAGTGCCGCGC
TCCTCGCTCCACTCGATATTGCAGCCGGGATACCGGGCACGCAGCTCCTC
CACCTGTCGCTTGGCATCTCGTGCCTGCTCCAGCAGCTCCAGAAACTTAT
GATGATAGGTGGTCAGGGCGCCCTTCTCATCGTAGAAGCGCCCAATTACC
CGTCCCTTGTAGACGTAGTCCTTTTGATAGAAATCCCGCCATCCGGCCAA
ACCAATCAGGTCGTCCGGCTTTAGGGTTAACACATCGTCGGCCGTTTCCG
GATCGTACGTCTCAAAATCACCGGAAATGAAGGATACGGAGGCGTCGCGA
CCCACGAAGAAGTTGTAGCTGCAGCCGGATCCGTAATGCTTAATGCCGCG
GCTCACATCGAAGACGGAACCGAGTAGAGCCAGGTAAAGCGGACGACCCT
CTTCCTCGCCATTGAATTTGGCCAACTCGGCCGGTGTAAAGAGCGTGCCG
ATATCGTCACCAGCTTGGAACGCCAGGGGAATGCTCGCATCCTGCCCAGC
TTGGTCCAGGTAGTTGTCCGTTTGGCGACGC
BO07117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-PA | 864 | CG12056-RA | 99..861 | 781..19 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 952 | CG12056-RA | 122..884 | 781..19 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9192790..9193552 | 781..19 | 3815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:17:16 has no hits.
BO07117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:41 Download gff for
BO07117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 99..864 | 18..781 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:50 Download gff for
BO07117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 99..864 | 18..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:04 Download gff for
BO07117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 122..888 | 13..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:47:37 Download gff for
BO07117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 122..888 | 13..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:47:37 Download gff for
BO07117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9192790..9193556 | 13..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:04 Download gff for
BO07117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9086823..9087589 | 13..781 | 99 | | Minus |
BO07117.5prime Sequence
897 bp (779 high quality bases) assembled on 2005-12-04
> BO07117.5prime
GAAGTTATCAGTCGACATGTTCGGATTGCTGCGACACCTGTTCAAATTTC
AATTTCTTTTCGTTGTGGCAGCCGTTCTGGGCGGAATTTATCACACAGAG
ATTAGGCAGTTCCTGCGTCGCCAAACGGACAACTACCTGGACCAAGCTGG
GCAGGATGCGAGCATTCCCCTGGCGTTCCAAGCTGGTGACGATATCGGCA
CGCTCTTTACACCGGCCGAGTTGGCCAAATTCAATGGCGAGGAAGAGGGT
CGTCCGCTTTACCTGGCTCTACTCGGTTCCGTCTTCGATGTGAGCCGCGG
CATTAAGCATTACGGATCCGGCTGCAGCTACAACTTCTTCGTGGGTCGCG
ACGCCTCCGTATCCTTCATTTCCGGTGATTTTGAGACGTACGATCCGGAA
ACGGCCGACGATGTGTTAACCCTAAAGCCGGACGACCTGATTGGTTTGGC
CGGATGGCGGGATTTCTATCAAAAGGACTACGTCTACAAGGGACGGGTAA
TTGGGCGCTTCTACGATGAGAAGGGCGCCCTGACCACCTATCATCATAAG
TTTCTGGAGCTGCTGGAGCAGGCACGAGATGCCAAGCGACAGGTGGAGGA
GCTGCGTGCCCGGTATCCCGGCTGCAATATCGAGTGGAGCGAGGAGCGCG
GCACTCGCGTCTGGTGCACCACGACCAGTGGCGATGGCAAGGAGCGCTCC
TGGATCGGTTATCCGCGCAAGCTGTACAGTCGCGGCAACAAGAGTTTCCA
GTGCGCCTGTGTGCCGGATGCGGAGCTGGACGAGATCGATGCCGGCGGCA
AGGTGGCTCACGGTGATGCCATGCTGAAACCCTACGACAATTGCGAGCCA
CAGGCCAGGGAGTGCTTCTACAGGGTGGGCAGCTTTCTAGACCATTT
BO07117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-PA | 864 | CG12056-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 952 | CG12056-RA | 24..884 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9192692..9193552 | 17..877 | 4305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:27:13 has no hits.
BO07117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:42 Download gff for
BO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:51 Download gff for
BO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:55 Download gff for
BO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:26 Download gff for
BO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..891 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:26 Download gff for
BO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9192692..9193559 | 17..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:55 Download gff for
BO07117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9086725..9087592 | 17..883 | 99 | | Plus |
BO07117.complete Sequence
895 bp (895 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630671
> BO07117.complete
GAAGTTATCAGTCGACATGTTCGGATTGCTGCGACACCTGTTCAAATTTC
AATTTCTTTTCGTTGTGGCAGCCGTTCTGGGCGGAATTTATCACACAGAG
ATTAGGCAGTTCCTGCGTCGCCAAACGGACAACTACCTGGACCAAGCTGG
GCAGGATGCGAGCATTCCCCTGGCGTTCCAAGCTGGTGACGATATCGGCA
CGCTCTTTACACCGGCCGAGTTGGCCAAATTCAATGGCGAGGAAGAGGGT
CGTCCGCTTTACCTGGCTCTACTCGGTTCCGTCTTCGATGTGAGCCGCGG
CATTAAGCATTACGGATCCGGCTGCAGCTACAACTTCTTCGTGGGTCGCG
ACGCCTCCGTATCCTTCATTTCCGGTGATTTTGAGACGTACGATCCGGAA
ACGGCCGACGATGTGTTAACCCTAAAGCCGGACGACCTGATTGGTTTGGC
CGGATGGCGGGATTTCTATCAAAAGGACTACGTCTACAAGGGACGGGTAA
TTGGGCGCTTCTACGATGAGAAGGGCGCCCTGACCACCTATCATCATAAG
TTTCTGGAGCTGCTGGAGCAGGCACGAGATGCCAAGCGACAGGTGGAGGA
GCTGCGTGCCCGGTATCCCGGCTGCAATATCGAGTGGAGCGAGGAGCGCG
GCACTCGCGTCTGGTGCACCACGACCAGTGGCGATGGCAAGGAGCGCTCC
TGGATCGGTTATCCGCGCAAGCTGTACAGTCGCGGCAACAAGAGTTTCCA
GTGCGCCTGTGTGCCGGATGCGGAGCTGGACGAGATCGATGCCGGCGGCA
AGGTGGCTCACGGTGATGCCATGCTGAAACCCTACGACAATTGCGAGCCA
CAGGCCAGGGAGTGCTTCTACAGGGTGGCAAGCTTTCTAGACCAT
BO07117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 864 | CG12056-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-RA | 952 | CG12056-RA | 24..884 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9192692..9193552 | 17..877 | 4305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:39:45 has no hits.
BO07117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:19:26 Download gff for
BO07117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:05 Download gff for
BO07117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..888 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:49 Download gff for
BO07117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 29..884 | 22..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:19:26 Download gff for
BO07117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 24..888 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:49 Download gff for
BO07117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12056-RA | 29..884 | 22..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:49 Download gff for
BO07117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9192697..9193552 | 22..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:49 Download gff for
BO07117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9086730..9087585 | 22..879 | 99 | | Plus |
BO07117.pep Sequence
Translation from 16 to 895
> BO07117.pep
MFGLLRHLFKFQFLFVVAAVLGGIYHTEIRQFLRRQTDNYLDQAGQDASI
PLAFQAGDDIGTLFTPAELAKFNGEEEGRPLYLALLGSVFDVSRGIKHYG
SGCSYNFFVGRDASVSFISGDFETYDPETADDVLTLKPDDLIGLAGWRDF
YQKDYVYKGRVIGRFYDEKGALTTYHHKFLELLEQARDAKRQVEELRARY
PGCNIEWSEERGTRVWCTTTSGDGKERSWIGYPRKLYSRGNKSFQCACVP
DAELDEIDAGGKVAHGDAMLKPYDNCEPQARECFYRVASFLDH
BO07117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12056-PA | 287 | CG12056-PA | 1..287 | 1..287 | 1546 | 100 | Plus |
