Clone BO07118 Report

Search the DGRC for BO07118

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:18
Vector:pDNR-Dual
Associated Gene/Transcriptcapa-RA
Protein status:BO07118.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO07118.3prime Sequence

485 bp (484 high quality bases) assembled on 2005-12-04

> BO07118.3prime
ATGGTCTAGAAAGCTTGCGTTGAGTTCCTTCTGTCCCTTGGAGATGTCCG
CAAACGACTTGGCGTCCACACTGCGCTTTCCCAGCCGGGGACCGAACCAC
AATCCCGAGGAGGCGCTGGGTCCCGTGCGCTTGTCCAGCACCTGTTGCAG
AGCCAGAAGGTGGGCCCACTTCCTCAGCTCGGCGTCACCGCGGCCAACGC
GTGGGAAGGCCACCAGACCACTGGCTTTCTTTTGGAAATCAGCCTCATTG
TAATCCTCCTGGGAGGCATCTCCGTAAATGCCGTCGAGGACTCCGGCCTC
TAATCCGTCGCGCAGACTGTTGGCCAGACTGGGATCGCTGCGACCAACGC
GCGGGAAGGCATAGAGCCCCATGTTGGCACCTCGTCGGTTCTTGTCGTGG
TCCGTCTCAGCTGTACTGAATTCGGCGATTATGAAAATCACTAGAACTAT
GTGGACCAACATAGATTTCATGTCGACTGATAACT

BO07118.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15520-PA 456 capa-RA 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 695 CG15520-RA 90..542 471..19 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29913144..29913371 19..246 1140 100 Plus
3R 32079331 3R 29913441..29913603 246..408 815 100 Plus
3R 32079331 3R 29914194..29914257 408..471 320 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:27:27 has no hits.

BO07118.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:43 Download gff for BO07118.3prime
Subject Subject Range Query Range Percent Splice Strand
capa-PA 1..456 18..471 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:52 Download gff for BO07118.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15520-PA 1..456 18..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:57 Download gff for BO07118.3prime
Subject Subject Range Query Range Percent Splice Strand
capa-RA 90..542 19..471 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:29 Download gff for BO07118.3prime
Subject Subject Range Query Range Percent Splice Strand
Capa-RA 90..542 19..471 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:29 Download gff for BO07118.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29913144..29913370 19..245 100 <- Plus
3R 29913441..29913602 246..407 100 <- Plus
3R 29914194..29914254 408..468 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:57 Download gff for BO07118.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25738866..25739092 19..245 100 <- Plus
arm_3R 25739163..25739324 246..407 100 <- Plus
arm_3R 25739916..25739976 408..468 100 <- Plus

BO07118.5prime Sequence

485 bp (484 high quality bases) assembled on 2005-12-04

> BO07118.5prime
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACGCAAGCTTTCTAGACC

BO07118.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15520-PA 456 capa-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 695 CG15520-RA 90..542 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29913144..29913371 469..242 1140 100 Minus
3R 32079331 3R 29913441..29913603 242..80 815 100 Minus
3R 32079331 3R 29914194..29914257 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:27:39 has no hits.

BO07118.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:44 Download gff for BO07118.5prime
Subject Subject Range Query Range Percent Splice Strand
capa-PA 1..456 17..470 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:53 Download gff for BO07118.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15520-PA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:00 Download gff for BO07118.5prime
Subject Subject Range Query Range Percent Splice Strand
capa-RA 90..542 17..469 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:30 Download gff for BO07118.5prime
Subject Subject Range Query Range Percent Splice Strand
Capa-RA 90..542 17..469 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:30 Download gff for BO07118.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29913144..29913370 243..469 100 <- Minus
3R 29913441..29913602 81..242 100 <- Minus
3R 29914194..29914254 20..80 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:00 Download gff for BO07118.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25739916..25739976 20..80 100 <- Minus
arm_3R 25738866..25739092 243..469 100 <- Minus
arm_3R 25739163..25739324 81..242 100 <- Minus

BO07118.complete Sequence

487 bp (487 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630672

> BO07118.complete
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACGCAAGCTTTCTAGACCAT

BO07118.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 456 CG15520-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-RA 695 CG15520-RA 90..542 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29913144..29913371 469..242 1140 100 Minus
3R 32079331 3R 29913441..29913603 242..80 815 100 Minus
3R 32079331 3R 29914194..29914257 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:57:26 has no hits.

BO07118.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:01 Download gff for BO07118.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 1..456 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:11 Download gff for BO07118.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 72..524 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:20 Download gff for BO07118.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 90..542 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:01 Download gff for BO07118.complete
Subject Subject Range Query Range Percent Splice Strand
capa-RA 72..524 17..469 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:02 Download gff for BO07118.complete
Subject Subject Range Query Range Percent Splice Strand
Capa-RA 90..542 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:02 Download gff for BO07118.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29913142..29913370 243..471 99 <- Minus
3R 29913441..29913602 81..242 100 <- Minus
3R 29914194..29914257 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:20 Download gff for BO07118.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25739916..25739979 17..80 100   Minus
arm_3R 25738864..25739092 243..471 99 <- Minus
arm_3R 25739163..25739324 81..242 100 <- Minus

BO07118.pep Sequence

Translation from 16 to 487

> BO07118.pep
MKSMLVHIVLVIFIIAEFSTAETDHDKNRRGANMGLYAFPRVGRSDPSLA
NSLRDGLEAGVLDGIYGDASQEDYNEADFQKKASGLVAFPRVGRGDAELR
KWAHLLALQQVLDKRTGPSASSGLWFGPRLGKRSVDAKSFADISKGQKEL
NASFLDH

BO07118.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Capa-PA 151 CG15520-PA 1..151 1..151 771 100 Plus