Clone Sequence Records
BO07118.3prime Sequence
485 bp (484 high quality bases) assembled on 2005-12-04
> BO07118.3prime
ATGGTCTAGAAAGCTTGCGTTGAGTTCCTTCTGTCCCTTGGAGATGTCCG
CAAACGACTTGGCGTCCACACTGCGCTTTCCCAGCCGGGGACCGAACCAC
AATCCCGAGGAGGCGCTGGGTCCCGTGCGCTTGTCCAGCACCTGTTGCAG
AGCCAGAAGGTGGGCCCACTTCCTCAGCTCGGCGTCACCGCGGCCAACGC
GTGGGAAGGCCACCAGACCACTGGCTTTCTTTTGGAAATCAGCCTCATTG
TAATCCTCCTGGGAGGCATCTCCGTAAATGCCGTCGAGGACTCCGGCCTC
TAATCCGTCGCGCAGACTGTTGGCCAGACTGGGATCGCTGCGACCAACGC
GCGGGAAGGCATAGAGCCCCATGTTGGCACCTCGTCGGTTCTTGTCGTGG
TCCGTCTCAGCTGTACTGAATTCGGCGATTATGAAAATCACTAGAACTAT
GTGGACCAACATAGATTTCATGTCGACTGATAACT
BO07118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15520-PA | 456 | capa-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 695 | CG15520-RA | 90..542 | 471..19 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29913144..29913371 | 19..246 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 29913441..29913603 | 246..408 | 815 | 100 | Plus |
3R | 32079331 | 3R | 29914194..29914257 | 408..471 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:27:27 has no hits.
BO07118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:43 Download gff for
BO07118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:52 Download gff for
BO07118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15520-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:07:57 Download gff for
BO07118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 90..542 | 19..471 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:29 Download gff for
BO07118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Capa-RA | 90..542 | 19..471 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:29 Download gff for
BO07118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29913144..29913370 | 19..245 | 100 | <- | Plus |
3R | 29913441..29913602 | 246..407 | 100 | <- | Plus |
3R | 29914194..29914254 | 408..468 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:07:57 Download gff for
BO07118.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25738866..25739092 | 19..245 | 100 | <- | Plus |
arm_3R | 25739163..25739324 | 246..407 | 100 | <- | Plus |
arm_3R | 25739916..25739976 | 408..468 | 100 | <- | Plus |
BO07118.5prime Sequence
485 bp (484 high quality bases) assembled on 2005-12-04
> BO07118.5prime
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACGCAAGCTTTCTAGACC
BO07118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15520-PA | 456 | capa-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 695 | CG15520-RA | 90..542 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29913144..29913371 | 469..242 | 1140 | 100 | Minus |
3R | 32079331 | 3R | 29913441..29913603 | 242..80 | 815 | 100 | Minus |
3R | 32079331 | 3R | 29914194..29914257 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:27:39 has no hits.
BO07118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:44 Download gff for
BO07118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:48:53 Download gff for
BO07118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15520-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:00 Download gff for
BO07118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 90..542 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:30 Download gff for
BO07118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Capa-RA | 90..542 | 17..469 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:30 Download gff for
BO07118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29913144..29913370 | 243..469 | 100 | <- | Minus |
3R | 29913441..29913602 | 81..242 | 100 | <- | Minus |
3R | 29914194..29914254 | 20..80 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:00 Download gff for
BO07118.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25739916..25739976 | 20..80 | 100 | <- | Minus |
arm_3R | 25738866..25739092 | 243..469 | 100 | <- | Minus |
arm_3R | 25739163..25739324 | 81..242 | 100 | <- | Minus |
BO07118.complete Sequence
487 bp (487 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630672
> BO07118.complete
GAAGTTATCAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGA
TTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAAC
CGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAG
CGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCC
TCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGAT
TTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGG
TGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGC
TGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCC
CGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAA
GGGACAGAAGGAACTCAACGCAAGCTTTCTAGACCAT
BO07118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 456 | CG15520-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 695 | CG15520-RA | 90..542 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29913144..29913371 | 469..242 | 1140 | 100 | Minus |
3R | 32079331 | 3R | 29913441..29913603 | 242..80 | 815 | 100 | Minus |
3R | 32079331 | 3R | 29914194..29914257 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:57:26 has no hits.
BO07118.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:01 Download gff for
BO07118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:11 Download gff for
BO07118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 72..524 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:20 Download gff for
BO07118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 90..542 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:01 Download gff for
BO07118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 72..524 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:02 Download gff for
BO07118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Capa-RA | 90..542 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:02 Download gff for
BO07118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29913142..29913370 | 243..471 | 99 | <- | Minus |
3R | 29913441..29913602 | 81..242 | 100 | <- | Minus |
3R | 29914194..29914257 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:20 Download gff for
BO07118.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25739916..25739979 | 17..80 | 100 | | Minus |
arm_3R | 25738864..25739092 | 243..471 | 99 | <- | Minus |
arm_3R | 25739163..25739324 | 81..242 | 100 | <- | Minus |
BO07118.pep Sequence
Translation from 16 to 487
> BO07118.pep
MKSMLVHIVLVIFIIAEFSTAETDHDKNRRGANMGLYAFPRVGRSDPSLA
NSLRDGLEAGVLDGIYGDASQEDYNEADFQKKASGLVAFPRVGRGDAELR
KWAHLLALQQVLDKRTGPSASSGLWFGPRLGKRSVDAKSFADISKGQKEL
NASFLDH
BO07118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-PA | 151 | CG15520-PA | 1..151 | 1..151 | 771 | 100 | Plus |