Clone Sequence Records
BO07121.3prime Sequence
839 bp (807 high quality bases) assembled on 2005-12-04
> BO07121.3prime
ATGGTCTAGAAAGCTTGCATTTGGTAGGCACCTCGTCTGAAAGTACTTCT
CATCGACGAAGCGACAGAACTCGACCAAGTGCTGGAACTTCTGCACCGTT
TGGGCCAGCGCCATGTTCGGCAGCGTGGTGGTCAGAATGCTGAAGAGGTG
GCCGAAGGCGATGGCGTCCAGTTCGCAGGGCTGATCGCCGTAGAAGAATG
GCGTTTCCGGCGACTCTTTCAGCTTGTATTCGAGCGTCTCACAGCACTTG
GCCACCTTGTCAATGACGCTATCGATGTCCAGGTCGTCCCACTGATAGAC
CTTCAACAGACGCAGCGCGTTCCGCCGCTTTCCATAGTTCTGCATGTGAT
TGAGGGGCCAGGGAAAAACGACTCCGTTCCTGGGCGCTGTGACCTCTTTG
TAGACGCGTTCGTTCTTGAAGCTAATGTACAGCTCAGCCATGGTGAAGAT
GTTCTCCACCAGCGACACATAGGTGCGCATGTCGGCCTTCTCGTCCTCGT
CCTGCCAGCTGCCAATGGCCAGTTCCTTCTGCTCCACAAAGTTCACGATC
GGCTCGAATTCGGCAAAGATGAATGCTCCTGCGCGGATGAAGGGCAACTT
GGTCATCCTGCCGCCCGGCGACATGTGCTCCGCGTTGGCACAGGACCGAA
TCAAAAAGGGGAGGTTGCACATCTTCAGGTAAGCCTTCACAGCAAGGCAA
CTGGCGTTTTCCGGCAGTAGGATCTGTTCCGCTTCATACGGCTGGTAGAG
GGTGGCGTCTTCGGGCCAGGGCTCGGCGGACAATTTGTCGGCCGTTATTA
GCTGGCTCAGGTACTGGGATGTCATGTCGACTGATAACT
BO07121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-PA | 810 | CG8004-RA | 1..807 | 825..19 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 1242 | CG8004-RA | 72..878 | 825..19 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19927558..19928283 | 19..744 | 3630 | 100 | Plus |
3L | 28110227 | 3L | 19928354..19928437 | 742..825 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:27:52 has no hits.
BO07121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:50 Download gff for
BO07121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:01 Download gff for
BO07121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:03 Download gff for
BO07121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 11..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:32 Download gff for
BO07121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 11..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:32 Download gff for
BO07121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19927553..19928280 | 11..741 | 99 | <- | Plus |
3L | 19928354..19928437 | 742..825 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:03 Download gff for
BO07121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19920653..19921380 | 11..741 | 99 | <- | Plus |
arm_3L | 19921454..19921537 | 742..825 | 100 | | Plus |
BO07121.5prime Sequence
839 bp (737 high quality bases) assembled on 2005-12-03
> BO07121.5prime
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATGCAAGCTTTCTAGACC
BO07121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-PA | 810 | CG8004-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 1242 | CG8004-RA | 72..878 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19927558..19928283 | 823..98 | 3630 | 100 | Minus |
3L | 28110227 | 3L | 19928354..19928437 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:55:32 has no hits.
BO07121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:51 Download gff for
BO07121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:02 Download gff for
BO07121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:39 Download gff for
BO07121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:20 Download gff for
BO07121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..883 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:20 Download gff for
BO07121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19927553..19928280 | 101..831 | 99 | <- | Minus |
3L | 19928354..19928437 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:39 Download gff for
BO07121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19920653..19921380 | 101..831 | 99 | <- | Minus |
arm_3L | 19921454..19921537 | 17..100 | 100 | | Minus |
BO07121.complete Sequence
841 bp (841 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630673
> BO07121.complete
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATGCAAGCTTTCTAGACCAT
BO07121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 810 | CG8004-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-RA | 1242 | CG8004-RA | 72..878 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19927558..19928283 | 823..98 | 3630 | 100 | Minus |
3L | 28110227 | 3L | 19928354..19928437 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:08:52 has no hits.
BO07121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:13 Download gff for
BO07121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:41 Download gff for
BO07121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 50..861 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:18 Download gff for
BO07121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..878 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:13 Download gff for
BO07121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 50..861 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:14 Download gff for
BO07121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8004-RA | 72..878 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:14 Download gff for
BO07121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19927556..19928280 | 101..825 | 99 | <- | Minus |
3L | 19928354..19928437 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:18 Download gff for
BO07121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19920656..19921380 | 101..825 | 99 | <- | Minus |
arm_3L | 19921454..19921537 | 17..100 | 100 | | Minus |
BO07121.pep Sequence
Translation from 16 to 841
> BO07121.pep
MTSQYLSQLITADKLSAEPWPEDATLYQPYEAEQILLPENASCLAVKAYL
KMCNLPFLIRSCANAEHMSPGGRMTKLPFIRAGAFIFAEFEPIVNFVEQK
ELAIGSWQDEDEKADMRTYVSLVENIFTMAELYISFKNERVYKEVTAPRN
GVVFPWPLNHMQNYGKRRNALRLLKVYQWDDLDIDSVIDKVAKCCETLEY
KLKESPETPFFYGDQPCELDAIAFGHLFSILTTTLPNMALAQTVQKFQHL
VEFCRFVDEKYFQTRCLPNASFLDH
BO07121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8004-PA | 269 | CG8004-PA | 1..269 | 1..269 | 1429 | 100 | Plus |
CG5662-PB | 292 | CG5662-PB | 11..278 | 6..270 | 626 | 46.6 | Plus |
CG5662-PA | 292 | CG5662-PA | 11..278 | 6..270 | 626 | 46.6 | Plus |