Clone BO07121 Report

Search the DGRC for BO07121

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG8004-RA
Protein status:BO07121.pep: validated full length
Sequenced Size:841

Clone Sequence Records

BO07121.3prime Sequence

839 bp (807 high quality bases) assembled on 2005-12-04

> BO07121.3prime
ATGGTCTAGAAAGCTTGCATTTGGTAGGCACCTCGTCTGAAAGTACTTCT
CATCGACGAAGCGACAGAACTCGACCAAGTGCTGGAACTTCTGCACCGTT
TGGGCCAGCGCCATGTTCGGCAGCGTGGTGGTCAGAATGCTGAAGAGGTG
GCCGAAGGCGATGGCGTCCAGTTCGCAGGGCTGATCGCCGTAGAAGAATG
GCGTTTCCGGCGACTCTTTCAGCTTGTATTCGAGCGTCTCACAGCACTTG
GCCACCTTGTCAATGACGCTATCGATGTCCAGGTCGTCCCACTGATAGAC
CTTCAACAGACGCAGCGCGTTCCGCCGCTTTCCATAGTTCTGCATGTGAT
TGAGGGGCCAGGGAAAAACGACTCCGTTCCTGGGCGCTGTGACCTCTTTG
TAGACGCGTTCGTTCTTGAAGCTAATGTACAGCTCAGCCATGGTGAAGAT
GTTCTCCACCAGCGACACATAGGTGCGCATGTCGGCCTTCTCGTCCTCGT
CCTGCCAGCTGCCAATGGCCAGTTCCTTCTGCTCCACAAAGTTCACGATC
GGCTCGAATTCGGCAAAGATGAATGCTCCTGCGCGGATGAAGGGCAACTT
GGTCATCCTGCCGCCCGGCGACATGTGCTCCGCGTTGGCACAGGACCGAA
TCAAAAAGGGGAGGTTGCACATCTTCAGGTAAGCCTTCACAGCAAGGCAA
CTGGCGTTTTCCGGCAGTAGGATCTGTTCCGCTTCATACGGCTGGTAGAG
GGTGGCGTCTTCGGGCCAGGGCTCGGCGGACAATTTGTCGGCCGTTATTA
GCTGGCTCAGGTACTGGGATGTCATGTCGACTGATAACT

BO07121.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 810 CG8004-RA 1..807 825..19 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 1242 CG8004-RA 72..878 825..19 4035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19927558..19928283 19..744 3630 100 Plus
3L 28110227 3L 19928354..19928437 742..825 420 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:27:52 has no hits.

BO07121.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:50 Download gff for BO07121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:01 Download gff for BO07121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:03 Download gff for BO07121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 11..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:32 Download gff for BO07121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 11..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:32 Download gff for BO07121.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19927553..19928280 11..741 99 <- Plus
3L 19928354..19928437 742..825 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:03 Download gff for BO07121.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19920653..19921380 11..741 99 <- Plus
arm_3L 19921454..19921537 742..825 100   Plus

BO07121.5prime Sequence

839 bp (737 high quality bases) assembled on 2005-12-03

> BO07121.5prime
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATGCAAGCTTTCTAGACC

BO07121.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 810 CG8004-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 1242 CG8004-RA 72..878 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19927558..19928283 823..98 3630 100 Minus
3L 28110227 3L 19928354..19928437 100..17 420 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:55:32 has no hits.

BO07121.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:51 Download gff for BO07121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:02 Download gff for BO07121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:39 Download gff for BO07121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 17..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:20 Download gff for BO07121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..883 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:20 Download gff for BO07121.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19927553..19928280 101..831 99 <- Minus
3L 19928354..19928437 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:39 Download gff for BO07121.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19920653..19921380 101..831 99 <- Minus
arm_3L 19921454..19921537 17..100 100   Minus

BO07121.complete Sequence

841 bp (841 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630673

> BO07121.complete
GAAGTTATCAGTCGACATGACATCCCAGTACCTGAGCCAGCTAATAACGG
CCGACAAATTGTCCGCCGAGCCCTGGCCCGAAGACGCCACCCTCTACCAG
CCGTATGAAGCGGAACAGATCCTACTGCCGGAAAACGCCAGTTGCCTTGC
TGTGAAGGCTTACCTGAAGATGTGCAACCTCCCCTTTTTGATTCGGTCCT
GTGCCAACGCGGAGCACATGTCGCCGGGCGGCAGGATGACCAAGTTGCCC
TTCATCCGCGCAGGAGCATTCATCTTTGCCGAATTCGAGCCGATCGTGAA
CTTTGTGGAGCAGAAGGAACTGGCCATTGGCAGCTGGCAGGACGAGGACG
AGAAGGCCGACATGCGCACCTATGTGTCGCTGGTGGAGAACATCTTCACC
ATGGCTGAGCTGTACATTAGCTTCAAGAACGAACGCGTCTACAAAGAGGT
CACAGCGCCCAGGAACGGAGTCGTTTTTCCCTGGCCCCTCAATCACATGC
AGAACTATGGAAAGCGGCGGAACGCGCTGCGTCTGTTGAAGGTCTATCAG
TGGGACGACCTGGACATCGATAGCGTCATTGACAAGGTGGCCAAGTGCTG
TGAGACGCTCGAATACAAGCTGAAAGAGTCGCCGGAAACGCCATTCTTCT
ACGGCGATCAGCCCTGCGAACTGGACGCCATCGCCTTCGGCCACCTCTTC
AGCATTCTGACCACCACGCTGCCGAACATGGCGCTGGCCCAAACGGTGCA
GAAGTTCCAGCACTTGGTCGAGTTCTGTCGCTTCGTCGATGAGAAGTACT
TTCAGACGAGGTGCCTACCAAATGCAAGCTTTCTAGACCAT

BO07121.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 810 CG8004-PA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-RA 1242 CG8004-RA 72..878 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19927558..19928283 823..98 3630 100 Minus
3L 28110227 3L 19928354..19928437 100..17 420 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:08:52 has no hits.

BO07121.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:13 Download gff for BO07121.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 1..810 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:41 Download gff for BO07121.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 50..861 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:18 Download gff for BO07121.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..878 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:13 Download gff for BO07121.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 50..861 17..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:14 Download gff for BO07121.complete
Subject Subject Range Query Range Percent Splice Strand
CG8004-RA 72..878 17..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:14 Download gff for BO07121.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19927556..19928280 101..825 99 <- Minus
3L 19928354..19928437 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:18 Download gff for BO07121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19920656..19921380 101..825 99 <- Minus
arm_3L 19921454..19921537 17..100 100   Minus

BO07121.pep Sequence

Translation from 16 to 841

> BO07121.pep
MTSQYLSQLITADKLSAEPWPEDATLYQPYEAEQILLPENASCLAVKAYL
KMCNLPFLIRSCANAEHMSPGGRMTKLPFIRAGAFIFAEFEPIVNFVEQK
ELAIGSWQDEDEKADMRTYVSLVENIFTMAELYISFKNERVYKEVTAPRN
GVVFPWPLNHMQNYGKRRNALRLLKVYQWDDLDIDSVIDKVAKCCETLEY
KLKESPETPFFYGDQPCELDAIAFGHLFSILTTTLPNMALAQTVQKFQHL
VEFCRFVDEKYFQTRCLPNASFLDH

BO07121.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8004-PA 269 CG8004-PA 1..269 1..269 1429 100 Plus
CG5662-PB 292 CG5662-PB 11..278 6..270 626 46.6 Plus
CG5662-PA 292 CG5662-PA 11..278 6..270 626 46.6 Plus