Clone BO07122 Report

Search the DGRC for BO07122

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG7789-RA
Protein status:BO07122.pep: validated full length
Sequenced Size:952

Clone Sequence Records

BO07122.3prime Sequence

862 bp (861 high quality bases) assembled on 2005-12-04

> BO07122.3prime
ATGGTCTAGAAAGCTTGCCTTGGCTCCCACTGCTGCCCGCACCTCGGCGG
GAATCTTTTCCACCAGCGCGGCATGGTCCTGTCCCAGGCTGGCCAGCACT
CCCTGTCGATTCACGTGCTCCACATCCGCATTGTAGGCGTAGTGCTCGCC
GTTGATGTTGGTGAGGCAGCCGCCCTGGGCCTCTAGAACGGCCTCGGGTG
CGCAGGTGTCCCACTTCTTGCAGCCCGGCGTGGCGAAGACGTACGCGTGG
GCCTTTCCCTCCAGCAGCTGGAGCACTTTGAACCCAGCGCCTCCGACTTT
CAGAACTTCTGTGGATGCGAATGCGTTGAGGGCTTGCTGATGCAGGGCAT
TGGAATGCGAGCGAGTGGTGGTTATGATGAACTGGCCGGCTGGCGCGGGG
ACTGCCGTGAATCCTCCCGTGCCCAGACCCTTCAGGCCCCAAATGGTGCG
ACCCATTTCGCCATCGGGCTGTTGGTAGAATGGCTGATGAATGATGCCGC
CCACAGCAGCATCCTTCACGGCTATGCCGATCAGGACGGTCACGTGTTCA
ACGTGTCCCTGTGTATACTCCGCTGTGCCGTCTAGGGGATCTACCCATAT
GACAAAGTCCTCGGGCTTGACATCCTTCCACTCAGCGGGGCAACTGTGCT
GCAGGAATTCCTCATCCAACTCGTTCACCAGCCAGTCGTCGCAGACATTC
AGATCGGATCCACCCTCCTCGCCAATGATCTTGACGGTGGGGAACTTTTT
GGCCAAGGAGGCGATAATGCAACGCTGGGCAGAGCGATCTGCCTCCGTCT
GCGGATCGTTCTTGCCCTTGTCCACTATGCCCAGGTCACCCTTCTTGAGC
ACGTCGCGTATG

BO07122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7789-PA 921 CG7789-RA 75..918 862..19 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7789-RA 1130 CG7789-RA 181..1024 862..19 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29803744..29804283 558..19 2700 100 Minus
3R 32079331 3R 29803376..29803681 862..557 1530 100 Minus
Blast to na_te.dros performed on 2015-02-12 09:55:49 has no hits.

BO07122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:52 Download gff for BO07122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-PA 75..921 16..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:04 Download gff for BO07122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-PA 75..921 16..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:40 Download gff for BO07122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 181..1036 10..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:27 Download gff for BO07122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 181..1036 10..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:27 Download gff for BO07122.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29803376..29803680 558..862 100 -> Minus
3R 29803745..29804295 10..557 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:40 Download gff for BO07122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25629098..25629402 558..862 100 -> Minus
arm_3R 25629467..25630017 10..557 99   Minus

BO07122.5prime Sequence

890 bp (864 high quality bases) assembled on 2005-12-04

> BO07122.5prime
GAAGTTATCAGTCGACATGGCTGCAACTGCTCCGGTAATTATGCGCGTCA
TGGCGTCCTCGATCAGCACCGCCAAGCGGGCTGGCGGCATCATACGCGAC
GTGCTCAAGAAGGGTGACCTGGGCATAGTGGACAAGGGCAAGAACGATCC
GCAGACGGAGGCAGATCGCTCTGCCCAGCGTTGCATTATCGCCTCCTTGG
CCAAAAAGTTCCCCACCGTCAAGATCATTGGCGAGGAGGGTGGATCCGAT
CTGAATGTCTGCGACGACTGGCTGGTGAACGAGTTGGATGAGGAATTCCT
GCAGCACAGTTGCCCCGCTGAGTGGAAGGATGTCAAGCCCGAGGACTTTG
TCATATGGGTAGATCCCCTAGACGGCACAGCGGAGTATACACAGGGACAC
GTTGAACACGTGACCGTCCTGATCGGCATAGCCGTGAAGGATGCTGCTGT
GGGCGGCATCATTCATCAGCCATTCTACCAACAGCCCGATGGCGAAATGG
GTCGCACCATTTGGGGCCTGAAGGGTCTGGGCACGGGAGGATTCACGGCA
GTCCCCGCGCCAGCCGGCCAGTTCATCATAACCACCACTCGCTCGCATTC
CAATGCCCTGCATCAGCAAGCCCTCAACGCATTCGCATCCACAGAAGTTC
TGAAAGTCGGAGGCGCTGGGTTCAAAGTGCTCCAGCTGCTGGAGGGAAAG
GCCCACGCGTACGTCTTCGCCACGCCGGGCTGCAAGAAGTGGGACACCTG
CGCACCCGAGGCCGTTCTAGAGGCCCAGGGCGGCTGCCTCACCAACATCA
ACGGCGAGCACTACGCCTACAATGCGGATGTGGAGCACGTGAATCGACAG
GGAGTGCTGGCCAGCCTGGGACAGGACCATGCCGCGCTGG

BO07122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7789-PA 921 CG7789-RA 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7789-RA 1130 CG7789-RA 107..980 17..890 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29803744..29804239 395..890 2480 100 Plus
3R 32079331 3R 29803302..29803681 17..396 1900 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:28:06 has no hits.

BO07122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:53 Download gff for BO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:05 Download gff for BO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:04 Download gff for BO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 107..980 17..890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:33 Download gff for BO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 107..980 17..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:33 Download gff for BO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29803302..29803680 17..395 100 -> Plus
3R 29803745..29804239 396..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:04 Download gff for BO07122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25629024..25629402 17..395 100 -> Plus
arm_3R 25629467..25629961 396..890 100   Plus

BO07122.complete Sequence

952 bp (952 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630674

> BO07122.complete
GAAGTTATCAGTCGACATGGCTGCAACTGCTCCGGTAATTATGCGCGTCA
TGGCGTCCTCGATCAGCACCGCCAAGCGGGCTGGCGGCATCATACGCGAC
GTGCTCAAGAAGGGTGACCTGGGCATAGTGGACAAGGGCAAGAACGATCC
GCAGACGGAGGCAGATCGCTCTGCCCAGCGTTGCATTATCGCCTCCTTGG
CCAAAAAGTTCCCCACCGTCAAGATCATTGGCGAGGAGGGTGGATCCGAT
CTGAATGTCTGCGACGACTGGCTGGTGAACGAGTTGGATGAGGAATTCCT
GCAGCACAGTTGCCCCGCTGAGTGGAAGGATGTCAAGCCCGAGGACTTTG
TCATATGGGTAGATCCCCTAGACGGCACAGCGGAGTATACACAGGGACAC
GTTGAACACGTGACCGTCCTGATCGGCATAGCCGTGAAGGATGCTGCTGT
GGGCGGCATCATTCATCAGCCATTCTACCAACAGCCCGATGGCGAAATGG
GTCGCACCATTTGGGGCCTGAAGGGTCTGGGCACGGGAGGATTCACGGCA
GTCCCCGCGCCAGCCGGCCAGTTCATCATAACCACCACTCGCTCGCATTC
CAATGCCCTGCATCAGCAAGCCCTCAACGCATTCGCATCCACAGAAGTTC
TGAAAGTCGGAGGCGCTGGGTTCAAAGTGCTCCAGCTGCTGGAGGGAAAG
GCCCACGCGTACGTCTTCGCCACGCCGGGCTGCAAGAAGTGGGACACCTG
CGCACCCGAGGCCGTTCTAGAGGCCCAGGGCGGCTGCCTCACCAACATCA
ACGGCGAGCACTACGCCTACAATGCGGATGTGGAGCACGTGAATCGACAG
GGAGTGCTGGCCAGCCTGGGACAGGACCATGCCGCGCTGGTGGAAAAGAT
TCCCGCCGAGGTGCGGGCAGCAGTGGGAGCCAAGGCAAGCTTTCTAGACC
AT

BO07122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7789-RA 921 CG7789-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7789-RA 1130 CG7789-RA 107..1024 17..934 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29803744..29804283 395..934 2700 100 Plus
3R 32079331 3R 29803302..29803681 17..396 1900 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:02:06 has no hits.

BO07122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:14 Download gff for BO07122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:43 Download gff for BO07122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 106..1035 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:18 Download gff for BO07122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 107..1024 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:14 Download gff for BO07122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 106..1035 17..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:13 Download gff for BO07122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7789-RA 107..1024 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:13 Download gff for BO07122.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29803302..29803680 17..395 100 -> Plus
3R 29803745..29804283 396..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:18 Download gff for BO07122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25629024..25629402 17..395 100 -> Plus
arm_3R 25629467..25630005 396..936 99   Plus

BO07122.pep Sequence

Translation from 16 to 952

> BO07122.pep
MAATAPVIMRVMASSISTAKRAGGIIRDVLKKGDLGIVDKGKNDPQTEAD
RSAQRCIIASLAKKFPTVKIIGEEGGSDLNVCDDWLVNELDEEFLQHSCP
AEWKDVKPEDFVIWVDPLDGTAEYTQGHVEHVTVLIGIAVKDAAVGGIIH
QPFYQQPDGEMGRTIWGLKGLGTGGFTAVPAPAGQFIITTTRSHSNALHQ
QALNAFASTEVLKVGGAGFKVLQLLEGKAHAYVFATPGCKKWDTCAPEAV
LEAQGGCLTNINGEHYAYNADVEHVNRQGVLASLGQDHAALVEKIPAEVR
AAVGAKASFLDH

BO07122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7789-PA 306 CG7789-PA 1..306 1..306 1601 100 Plus
CG15743-PB 355 CG15743-PB 57..343 8..295 360 33.1 Plus
CG15743-PC 355 CG15743-PC 57..343 8..295 360 33.1 Plus
CG15743-PA 355 CG15743-PA 57..343 8..295 360 33.1 Plus
Ipp-PA 375 CG3028-PA 159..319 113..256 157 27.4 Plus