Clone Sequence Records
BO07122.3prime Sequence
862 bp (861 high quality bases) assembled on 2005-12-04
> BO07122.3prime
ATGGTCTAGAAAGCTTGCCTTGGCTCCCACTGCTGCCCGCACCTCGGCGG
GAATCTTTTCCACCAGCGCGGCATGGTCCTGTCCCAGGCTGGCCAGCACT
CCCTGTCGATTCACGTGCTCCACATCCGCATTGTAGGCGTAGTGCTCGCC
GTTGATGTTGGTGAGGCAGCCGCCCTGGGCCTCTAGAACGGCCTCGGGTG
CGCAGGTGTCCCACTTCTTGCAGCCCGGCGTGGCGAAGACGTACGCGTGG
GCCTTTCCCTCCAGCAGCTGGAGCACTTTGAACCCAGCGCCTCCGACTTT
CAGAACTTCTGTGGATGCGAATGCGTTGAGGGCTTGCTGATGCAGGGCAT
TGGAATGCGAGCGAGTGGTGGTTATGATGAACTGGCCGGCTGGCGCGGGG
ACTGCCGTGAATCCTCCCGTGCCCAGACCCTTCAGGCCCCAAATGGTGCG
ACCCATTTCGCCATCGGGCTGTTGGTAGAATGGCTGATGAATGATGCCGC
CCACAGCAGCATCCTTCACGGCTATGCCGATCAGGACGGTCACGTGTTCA
ACGTGTCCCTGTGTATACTCCGCTGTGCCGTCTAGGGGATCTACCCATAT
GACAAAGTCCTCGGGCTTGACATCCTTCCACTCAGCGGGGCAACTGTGCT
GCAGGAATTCCTCATCCAACTCGTTCACCAGCCAGTCGTCGCAGACATTC
AGATCGGATCCACCCTCCTCGCCAATGATCTTGACGGTGGGGAACTTTTT
GGCCAAGGAGGCGATAATGCAACGCTGGGCAGAGCGATCTGCCTCCGTCT
GCGGATCGTTCTTGCCCTTGTCCACTATGCCCAGGTCACCCTTCTTGAGC
ACGTCGCGTATG
BO07122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-PA | 921 | CG7789-RA | 75..918 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 1130 | CG7789-RA | 181..1024 | 862..19 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29803744..29804283 | 558..19 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 29803376..29803681 | 862..557 | 1530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:55:49 has no hits.
BO07122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:52 Download gff for
BO07122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 75..921 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:04 Download gff for
BO07122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 75..921 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:40 Download gff for
BO07122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 181..1036 | 10..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:27 Download gff for
BO07122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 181..1036 | 10..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:27 Download gff for
BO07122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29803376..29803680 | 558..862 | 100 | -> | Minus |
3R | 29803745..29804295 | 10..557 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:40 Download gff for
BO07122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25629098..25629402 | 558..862 | 100 | -> | Minus |
arm_3R | 25629467..25630017 | 10..557 | 99 | | Minus |
BO07122.5prime Sequence
890 bp (864 high quality bases) assembled on 2005-12-04
> BO07122.5prime
GAAGTTATCAGTCGACATGGCTGCAACTGCTCCGGTAATTATGCGCGTCA
TGGCGTCCTCGATCAGCACCGCCAAGCGGGCTGGCGGCATCATACGCGAC
GTGCTCAAGAAGGGTGACCTGGGCATAGTGGACAAGGGCAAGAACGATCC
GCAGACGGAGGCAGATCGCTCTGCCCAGCGTTGCATTATCGCCTCCTTGG
CCAAAAAGTTCCCCACCGTCAAGATCATTGGCGAGGAGGGTGGATCCGAT
CTGAATGTCTGCGACGACTGGCTGGTGAACGAGTTGGATGAGGAATTCCT
GCAGCACAGTTGCCCCGCTGAGTGGAAGGATGTCAAGCCCGAGGACTTTG
TCATATGGGTAGATCCCCTAGACGGCACAGCGGAGTATACACAGGGACAC
GTTGAACACGTGACCGTCCTGATCGGCATAGCCGTGAAGGATGCTGCTGT
GGGCGGCATCATTCATCAGCCATTCTACCAACAGCCCGATGGCGAAATGG
GTCGCACCATTTGGGGCCTGAAGGGTCTGGGCACGGGAGGATTCACGGCA
GTCCCCGCGCCAGCCGGCCAGTTCATCATAACCACCACTCGCTCGCATTC
CAATGCCCTGCATCAGCAAGCCCTCAACGCATTCGCATCCACAGAAGTTC
TGAAAGTCGGAGGCGCTGGGTTCAAAGTGCTCCAGCTGCTGGAGGGAAAG
GCCCACGCGTACGTCTTCGCCACGCCGGGCTGCAAGAAGTGGGACACCTG
CGCACCCGAGGCCGTTCTAGAGGCCCAGGGCGGCTGCCTCACCAACATCA
ACGGCGAGCACTACGCCTACAATGCGGATGTGGAGCACGTGAATCGACAG
GGAGTGCTGGCCAGCCTGGGACAGGACCATGCCGCGCTGG
BO07122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-PA | 921 | CG7789-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 1130 | CG7789-RA | 107..980 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29803744..29804239 | 395..890 | 2480 | 100 | Plus |
3R | 32079331 | 3R | 29803302..29803681 | 17..396 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:28:06 has no hits.
BO07122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:53 Download gff for
BO07122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:05 Download gff for
BO07122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:04 Download gff for
BO07122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..980 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:33 Download gff for
BO07122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..980 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:33 Download gff for
BO07122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29803302..29803680 | 17..395 | 100 | -> | Plus |
3R | 29803745..29804239 | 396..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:04 Download gff for
BO07122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25629024..25629402 | 17..395 | 100 | -> | Plus |
arm_3R | 25629467..25629961 | 396..890 | 100 | | Plus |
BO07122.complete Sequence
952 bp (952 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630674
> BO07122.complete
GAAGTTATCAGTCGACATGGCTGCAACTGCTCCGGTAATTATGCGCGTCA
TGGCGTCCTCGATCAGCACCGCCAAGCGGGCTGGCGGCATCATACGCGAC
GTGCTCAAGAAGGGTGACCTGGGCATAGTGGACAAGGGCAAGAACGATCC
GCAGACGGAGGCAGATCGCTCTGCCCAGCGTTGCATTATCGCCTCCTTGG
CCAAAAAGTTCCCCACCGTCAAGATCATTGGCGAGGAGGGTGGATCCGAT
CTGAATGTCTGCGACGACTGGCTGGTGAACGAGTTGGATGAGGAATTCCT
GCAGCACAGTTGCCCCGCTGAGTGGAAGGATGTCAAGCCCGAGGACTTTG
TCATATGGGTAGATCCCCTAGACGGCACAGCGGAGTATACACAGGGACAC
GTTGAACACGTGACCGTCCTGATCGGCATAGCCGTGAAGGATGCTGCTGT
GGGCGGCATCATTCATCAGCCATTCTACCAACAGCCCGATGGCGAAATGG
GTCGCACCATTTGGGGCCTGAAGGGTCTGGGCACGGGAGGATTCACGGCA
GTCCCCGCGCCAGCCGGCCAGTTCATCATAACCACCACTCGCTCGCATTC
CAATGCCCTGCATCAGCAAGCCCTCAACGCATTCGCATCCACAGAAGTTC
TGAAAGTCGGAGGCGCTGGGTTCAAAGTGCTCCAGCTGCTGGAGGGAAAG
GCCCACGCGTACGTCTTCGCCACGCCGGGCTGCAAGAAGTGGGACACCTG
CGCACCCGAGGCCGTTCTAGAGGCCCAGGGCGGCTGCCTCACCAACATCA
ACGGCGAGCACTACGCCTACAATGCGGATGTGGAGCACGTGAATCGACAG
GGAGTGCTGGCCAGCCTGGGACAGGACCATGCCGCGCTGGTGGAAAAGAT
TCCCGCCGAGGTGCGGGCAGCAGTGGGAGCCAAGGCAAGCTTTCTAGACC
AT
BO07122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 921 | CG7789-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-RA | 1130 | CG7789-RA | 107..1024 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29803744..29804283 | 395..934 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 29803302..29803681 | 17..396 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:02:06 has no hits.
BO07122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:14 Download gff for
BO07122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:43 Download gff for
BO07122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 106..1035 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:18 Download gff for
BO07122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..1024 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:14 Download gff for
BO07122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 106..1035 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:13 Download gff for
BO07122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7789-RA | 107..1024 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:13 Download gff for
BO07122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29803302..29803680 | 17..395 | 100 | -> | Plus |
3R | 29803745..29804283 | 396..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:18 Download gff for
BO07122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25629024..25629402 | 17..395 | 100 | -> | Plus |
arm_3R | 25629467..25630005 | 396..936 | 99 | | Plus |
BO07122.pep Sequence
Translation from 16 to 952
> BO07122.pep
MAATAPVIMRVMASSISTAKRAGGIIRDVLKKGDLGIVDKGKNDPQTEAD
RSAQRCIIASLAKKFPTVKIIGEEGGSDLNVCDDWLVNELDEEFLQHSCP
AEWKDVKPEDFVIWVDPLDGTAEYTQGHVEHVTVLIGIAVKDAAVGGIIH
QPFYQQPDGEMGRTIWGLKGLGTGGFTAVPAPAGQFIITTTRSHSNALHQ
QALNAFASTEVLKVGGAGFKVLQLLEGKAHAYVFATPGCKKWDTCAPEAV
LEAQGGCLTNINGEHYAYNADVEHVNRQGVLASLGQDHAALVEKIPAEVR
AAVGAKASFLDH
BO07122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7789-PA | 306 | CG7789-PA | 1..306 | 1..306 | 1601 | 100 | Plus |
CG15743-PB | 355 | CG15743-PB | 57..343 | 8..295 | 360 | 33.1 | Plus |
CG15743-PC | 355 | CG15743-PC | 57..343 | 8..295 | 360 | 33.1 | Plus |
CG15743-PA | 355 | CG15743-PA | 57..343 | 8..295 | 360 | 33.1 | Plus |
Ipp-PA | 375 | CG3028-PA | 159..319 | 113..256 | 157 | 27.4 | Plus |