Clone Sequence Records
BO07125.3prime Sequence
922 bp (869 high quality bases) assembled on 2005-12-04
> BO07125.3prime
ATGGTCTAGAAAGCTTGCATTGTAGAATGGATTATAGGTGACCCAGTGGG
CGCGCTCCTGGTCCTTTTCGGTTTTATGGGAGGTGAAAAGGGACTTGTAA
ACATCGCTGGCCTTCGGGTCCTTGGCCACGCTGAAGTCGCTCTTGAGACG
CTTCAGTTCGGGATCCTGCATTGCATTAACGGCGCCCAGTCGTTTGACCG
GCGCCACCGCCTTGGTTTTTGTGCTTGTAGTGGGCTTCTCTGCGGCTGCA
GCCTTGGATGTGGACGCCACTGGCTCCTGTTCCTCTGCGGGCTCCGCTTT
CACCTCCACCTTTTTGGCACTCTTCTTGTCCTTTTTGGAGGACTTACGCT
TGGCCGCACGCATTTCCATCTTGACCCGCATGAGCTCCATGTCCTCCTCG
TTGCCATTGAGGACCACCACGTCCTCAACGCTATAGGCAGCCTGGCACAG
CGGACAAGTGCTAGCCACACTGCCTTTGATCTGTTTCAAGGCACGCTCTG
ATAAAACGCATCCGCAGCTCCAAAGGGCCACAAAGCGAAATTTGCCGGAC
ATCTCCAGGCCAATCAGCTTGCAGATGTAAGGAGAATGTCGTGTGTCCAG
CAGTCCCTCAGTTTTGTCCTCCTCGGTGAAGGCGGGATTGGGTGTGGGAT
TAAGCTGGCGAATGTCCTTCATGCTCTTCACGTGCGCAGCTGTCTCTGGC
ATCGGTTCCTTCTCCAGCAGTCGCTCAATGACGCTCTGCTTGGAATAGAG
CCTACCCATGCCGCACATGGCGATCGGCTCCTGGAGGCTTTGCTGGGGTC
AGGTGCAGTGGCGCCAACGGAACTCCCTCTCCGCATCTTTGTCTTTCTGC
TCTGGCTTTTGCTTCACGCGCACCAGCTCATCGCGCCTGGGAATAGTTCC
TCCATCGCAACCCATGTCGACT
BO07125.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-PA | 900 | CG6443-RA | 119..897 | 797..19 | 3895 | 100 | Minus |
CG6443-PA | 900 | CG6443-RA | 1..115 | 915..801 | 575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 1184 | CG6443-RA | 184..1081 | 916..19 | 4445 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10729369..10730199 | 849..19 | 4110 | 99.6 | Minus |
2L | 23513712 | 2L | 10729239..10729308 | 916..847 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:28:18 has no hits.
BO07125.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:09:59 Download gff for
BO07125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 1..900 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:13 Download gff for
BO07125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 1..900 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:07 Download gff for
BO07125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 179..1081 | 19..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:34 Download gff for
BO07125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 179..1081 | 19..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:34 Download gff for
BO07125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10729234..10729308 | 847..922 | 94 | -> | Minus |
2L | 10729372..10730199 | 19..846 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:07 Download gff for
BO07125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10729234..10729308 | 847..922 | 94 | -> | Minus |
arm_2L | 10729372..10730199 | 19..846 | 99 | | Minus |
BO07125.5prime Sequence
883 bp (846 high quality bases) assembled on 2005-12-03
> BO07125.5prime
GAAGTTATCAGTCGACATGGGTTGCGATGGAGGAACTATTCCCAGGCGCG
ATGAGCTGGTGCGCGTGAAGCAAAAGCCAGAGCAGAAAGACAAAGATGCG
GAGAGGGAGTTCCGTTGGCGCCACTGCACCTTGACCCAGCAAAGCCTCCA
GGAGCCGATCGCCATGTGCGGCATGGGTAGGCTCTATTCCAAGCAGAGCG
TCATTGAGCGACTGCTGGAGAAGGAACCGATGCCAGAGACAGCTGCGCAC
GTGAAGAGCATGAAGGACATTCGCCAGCTTAATCCCACACCCAATCCCGC
CTTCACCGAGGAGGACAAAACTGAGGGACTGCTGGACACACGACATTCTC
CTTACATCTGCAAGCTGATTGGCCTGGAGATGTCCGGCAAATTTCGCTTT
GTGGCCCTTTGGAGCTGCGGATGCGTTTTATCAGAGCGTGCCTTGAAACA
GATCAAAGGCAGTGTGGCTAGCACTTGTCCGCTGTGCCAGGCTGCCTATA
GCGTTGAGGACGTGGTGGTCCTCAATGGCAACGAGGAGGACATGGAGCTC
ATGCGGGTCAAGATGGAAATGCGTGCGGCCAAGCGTAAGTCCTCCAAAAA
GGACAAGAAGAGTGCCAAAAAGGTGGAGGTGAAAGCGGAGCCCGCAGAGG
AACAGGAGCCAGTGGCGTCCACATCCAAGGCTGCAGCCGCAGAGAAGCCC
ACTACAAGCACAAAAACCAAGGCGGTGGCGCCGGTCAAACGACTGGGCGC
CGTTAATGCAATGCAGGATCCCGAACTGAAGCGTCTCAAGAGCGACTTCA
GCGTGGCCAAGGACCCGAAGGCCAGCGATGTTTACAAGTCCCTTTTTCAC
CTCCATAAAACCCGAAAGGACCAGGAGCGCGCC
BO07125.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-PA | 900 | CG6443-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 1184 | CG6443-RA | 184..1051 | 16..883 | 4265 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10729369..10730169 | 83..883 | 3900 | 99.1 | Plus |
2L | 23513712 | 2L | 10729239..10729308 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:09:36 has no hits.
BO07125.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:00 Download gff for
BO07125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:15 Download gff for
BO07125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:10 Download gff for
BO07125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 184..1051 | 16..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:28 Download gff for
BO07125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 184..1051 | 16..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:28 Download gff for
BO07125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10729239..10729308 | 16..85 | 100 | -> | Plus |
2L | 10729372..10730169 | 86..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:10 Download gff for
BO07125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10729239..10729308 | 16..85 | 100 | -> | Plus |
arm_2L | 10729372..10730169 | 86..883 | 99 | | Plus |
BO07125.complete Sequence
931 bp (931 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630675
> BO07125.complete
GAAGTTATCAGTCGACATGGGTTGCGATGGAGGAACTATTCCCAGGCGCG
ATGAGCTGGTGCGCGTGAAGCAAAAGCCAGAGCAGAAAGACAAAGATGCG
GAGAGGGAGTTCCGTTGGCGCCACTGCACCTTGACCCAGCAAAGCCTCCA
GGAGCCGATCGCCATGTGCGGCATGGGTAGGCTCTATTCCAAGCAGAGCG
TCATTGAGCGACTGCTGGAGAAGGAACCGATGCCAGAGACAGCTGCGCAC
GTGAAGAGCATGAAGGACATTCGCCAGCTTAATCCCACACCCAATCCCGC
CTTCACCGAGGAGGACAAAACTGAGGGACTGCTGGACACACGACATTCTC
CTTACATCTGCAAGCTGATTGGCCTGGAGATGTCCGGCAAATTTCGCTTT
GTGGCCCTTTGGAGCTGCGGATGCGTTTTATCAGAGCGTGCCTTGAAACA
GATCAAAGGCAGTGTGGCTAGCACTTGTCCGCTGTGCCAGGCTGCCTATA
GCGTTGAGGACGTGGTGGTCCTCAATGGCAACGAGGAGGACATGGAGCTC
ATGCGGGTCAAGATGGAAATGCGTGCGGCCAAGCGTAAGTCCTCCAAAAA
GGACAAGAAGAGTGCCAAAAAGGTGGAGGTGAAAGCGGAGCCCGCAGAGG
AACAGGAGCCAGTGGCGTCCACATCCAAGGCTGCAGCCGCAGAGAAGCCC
ACTACAAGCACAAAAACCAAGGCGGTGGCGCCGGTCAAACGACTGGGCGC
CGTTAATGCAATGCAGGATCCCGAACTGAAGCGTCTCAAGAGCGACTTCA
GCGTGGCCAAGGACCCGAAGGCCAGCGATGTTTACAAGTCCCTTTTCACC
TCCCATAAAACCGAAAAGGACCAGGAGCGCGCCCACTGGGTCACCTATAA
TCCATTCTACAATGCAAGCTTTCTAGACCAT
BO07125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 900 | CG6443-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-RA | 1184 | CG6443-RA | 184..1081 | 16..913 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10729369..10730199 | 83..913 | 4155 | 100 | Plus |
2L | 23513712 | 2L | 10729239..10729308 | 16..85 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:17:27 has no hits.
BO07125.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:15 Download gff for
BO07125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:44 Download gff for
BO07125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 187..1084 | 16..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:56 Download gff for
BO07125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 185..1081 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:16 Download gff for
BO07125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 187..1084 | 16..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:13 Download gff for
BO07125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6443-RA | 185..1081 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:13 Download gff for
BO07125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10729240..10729308 | 17..85 | 100 | -> | Plus |
2L | 10729372..10730199 | 86..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:56 Download gff for
BO07125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10729240..10729308 | 17..85 | 100 | -> | Plus |
arm_2L | 10729372..10730199 | 86..915 | 99 | | Plus |
BO07125.pep Sequence
Translation from 16 to 931
> BO07125.pep
MGCDGGTIPRRDELVRVKQKPEQKDKDAEREFRWRHCTLTQQSLQEPIAM
CGMGRLYSKQSVIERLLEKEPMPETAAHVKSMKDIRQLNPTPNPAFTEED
KTEGLLDTRHSPYICKLIGLEMSGKFRFVALWSCGCVLSERALKQIKGSV
ASTCPLCQAAYSVEDVVVLNGNEEDMELMRVKMEMRAAKRKSSKKDKKSA
KKVEVKAEPAEEQEPVASTSKAAAAEKPTTSTKTKAVAPVKRLGAVNAMQ
DPELKRLKSDFSVAKDPKASDVYKSLFTSHKTEKDQERAHWVTYNPFYNA
SFLDH
BO07125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6443-PA | 299 | CG6443-PA | 1..299 | 1..299 | 1549 | 100 | Plus |