Clone Sequence Records
BO07126.3prime Sequence
911 bp (840 high quality bases) assembled on 2005-12-04
> BO07126.3prime
ATGGTCTAGAAAGCTTGCTTTGAGCGACAGCTTTTTTTGCTCGATTTCCA
ATAGTTTCTTTTTCAGTTCTATTTTCTCAGCCATTAACTGTTCAATTGCC
AAGTGATGTCGCTTGTCCTCGTACAGCTTCTGCTTGTACAGGACAAAAAA
TTCATTGAGTGCAAGTTGAACGCTGTTGGCGGTATCGTGCACCATTTCTA
GGTTATTGCTAATCTTGTCAAGCAGTGTGGTCTCCTCCTCCGCCAGTCGA
CTGCTGGCCAATGCGGCCCGTTTGTTAGATTGCAGGTAAAGCGGGTCAAT
GTCCGTTTTGTTCTCCTCCGGTTCGTAAACGTACTCGGCGGAAGTCTGAA
GGGCGCCACCATCTTCTTCCGGGACCACATCCTCTACTTCGTCCACATCA
AATTCCGTGGTGGAATTCTCATGCATTTCATCGTCGGAGACCTTCATAAT
AATCTGACTTACATCCTCGTTTAATCTACACAGTGTGGCTATTGTTTCCT
CCGACGAAGTAAGACTGGTGCCAAAAGGCATGTTCTGCATCTCATTCTTT
TCCACCTTTCTCAGGATAAACCTCTTCCAGTCCTTTAAGGCCCTTCTCCA
GGTGGCTATATCTTTTCGCGGCGGACCGTGGCTATTAAGTTCGGATGACA
GTTCCTCCCACAGCGACTCCAGATTGCCCCGTGTTTCCCACGTCGGATTC
TGAAGCAGACGCGGATGTTTCTTCACGAATTCTAACAATATCAGCTCTTG
CGTTGAGTTGCGCGGCTTGGCTTTGTTCCGGTCGATGGCGATGGTGGTCT
GCGGCTGGAATTTGTACTTGGAGTTCCGGTTGAGTCCCGATGTGGGGTGC
ATCCTGTTCATGTGCTTGCTTAGATTCGTGGTGGTCGTCTTGTAAGAGAG
CTTCGCCTTGC
BO07126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-PA | 969 | CG3995-RA | 74..966 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 1185 | CG3995-RA | 148..1040 | 911..19 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17042041..17042614 | 19..592 | 2870 | 100 | Plus |
3R | 32079331 | 3R | 17042669..17042989 | 591..911 | 1605 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 3635..3676 | 73..32 | 111 | 73.8 | Minus |
BO07126.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:01 Download gff for
BO07126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 74..969 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:16 Download gff for
BO07126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 74..969 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:37 Download gff for
BO07126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 148..1043 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:43 Download gff for
BO07126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 148..1043 | 15..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:43 Download gff for
BO07126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17042038..17042613 | 15..591 | 99 | <- | Plus |
3R | 17042670..17042989 | 592..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:37 Download gff for
BO07126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12867760..12868335 | 15..591 | 99 | <- | Plus |
arm_3R | 12868392..12868711 | 592..911 | 100 | | Plus |
BO07126.5prime Sequence
862 bp (760 high quality bases) assembled on 2005-12-03
> BO07126.5prime
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTG
BO07126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-PA | 969 | CG3995-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 1185 | CG3995-RA | 68..920 | 10..862 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17042161..17042614 | 862..409 | 2270 | 100 | Minus |
3R | 32079331 | 3R | 17042669..17043069 | 410..10 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:03:50 has no hits.
BO07126.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:02 Download gff for
BO07126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:18 Download gff for
BO07126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:11 Download gff for
BO07126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 63..920 | 2..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:14 Download gff for
BO07126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 63..920 | 2..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:14 Download gff for
BO07126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17042161..17042613 | 410..862 | 100 | <- | Minus |
3R | 17042670..17043074 | 2..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:11 Download gff for
BO07126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12867883..12868335 | 410..862 | 100 | <- | Minus |
arm_3R | 12868392..12868796 | 2..409 | 98 | | Minus |
BO07126.complete Sequence
1000 bp (1000 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630676
> BO07126.complete
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTGTACAAGCAGAAGCTGTACGAGGACAAGCGACATCACTT
GGCAATTGAACAGTTAATGGCTGAGAAAATAGAACTGAAAAAGAAACTAT
TGGAAATCGAGCAAAAAAAGCTGTCGCTCAAAGCAAGCTTTCTAGACCAT
BO07126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 969 | CG3995-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-RA | 1185 | CG3995-RA | 68..1040 | 10..982 | 4850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17042041..17042614 | 982..409 | 2870 | 100 | Minus |
3R | 32079331 | 3R | 17042669..17043069 | 410..10 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 00:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 3635..3676 | 928..969 | 111 | 73.8 | Plus |
BO07126.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:52 Download gff for
BO07126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 1..969 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:17 Download gff for
BO07126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 31..1011 | 2..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:37 Download gff for
BO07126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 75..1040 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:52 Download gff for
BO07126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 31..1011 | 2..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:21 Download gff for
BO07126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3995-RA | 75..1040 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:21 Download gff for
BO07126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17042039..17042613 | 410..984 | 99 | <- | Minus |
3R | 17042670..17043062 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:37 Download gff for
BO07126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12867761..12868335 | 410..984 | 99 | <- | Minus |
arm_3R | 12868392..12868784 | 17..409 | 100 | | Minus |
BO07126.pep Sequence
Translation from 16 to 1000
> BO07126.pep
MKRKTSEIWCFFRAVDDTFAVCNICKAKLSYKTTTTNLSKHMNRMHPTSG
LNRNSKYKFQPQTTIAIDRNKAKPRNSTQELILLEFVKKHPRLLQNPTWE
TRGNLESLWEELSSELNSHGPPRKDIATWRRALKDWKRFILRKVEKNEMQ
NMPFGTSLTSSEETIATLCRLNEDVSQIIMKVSDDEMHENSTTEFDVDEV
EDVVPEEDGGALQTSAEYVYEPEENKTDIDPLYLQSNKRAALASSRLAEE
ETTLLDKISNNLEMVHDTANSVQLALNEFFVLYKQKLYEDKRHHLAIEQL
MAEKIELKKKLLEIEQKKLSLKASFLDH
BO07126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3995-PA | 322 | CG3995-PA | 1..322 | 1..322 | 1663 | 100 | Plus |
CG30428-PA | 263 | CG30428-PA | 3..256 | 73..301 | 187 | 25.6 | Plus |
CG30428-PB | 247 | CG30428-PB | 1..240 | 87..301 | 163 | 25 | Plus |