Clone BO07126 Report

Search the DGRC for BO07126

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG3995-RA
Protein status:BO07126.pep: validated full length
Sequenced Size:1000

Clone Sequence Records

BO07126.3prime Sequence

911 bp (840 high quality bases) assembled on 2005-12-04

> BO07126.3prime
ATGGTCTAGAAAGCTTGCTTTGAGCGACAGCTTTTTTTGCTCGATTTCCA
ATAGTTTCTTTTTCAGTTCTATTTTCTCAGCCATTAACTGTTCAATTGCC
AAGTGATGTCGCTTGTCCTCGTACAGCTTCTGCTTGTACAGGACAAAAAA
TTCATTGAGTGCAAGTTGAACGCTGTTGGCGGTATCGTGCACCATTTCTA
GGTTATTGCTAATCTTGTCAAGCAGTGTGGTCTCCTCCTCCGCCAGTCGA
CTGCTGGCCAATGCGGCCCGTTTGTTAGATTGCAGGTAAAGCGGGTCAAT
GTCCGTTTTGTTCTCCTCCGGTTCGTAAACGTACTCGGCGGAAGTCTGAA
GGGCGCCACCATCTTCTTCCGGGACCACATCCTCTACTTCGTCCACATCA
AATTCCGTGGTGGAATTCTCATGCATTTCATCGTCGGAGACCTTCATAAT
AATCTGACTTACATCCTCGTTTAATCTACACAGTGTGGCTATTGTTTCCT
CCGACGAAGTAAGACTGGTGCCAAAAGGCATGTTCTGCATCTCATTCTTT
TCCACCTTTCTCAGGATAAACCTCTTCCAGTCCTTTAAGGCCCTTCTCCA
GGTGGCTATATCTTTTCGCGGCGGACCGTGGCTATTAAGTTCGGATGACA
GTTCCTCCCACAGCGACTCCAGATTGCCCCGTGTTTCCCACGTCGGATTC
TGAAGCAGACGCGGATGTTTCTTCACGAATTCTAACAATATCAGCTCTTG
CGTTGAGTTGCGCGGCTTGGCTTTGTTCCGGTCGATGGCGATGGTGGTCT
GCGGCTGGAATTTGTACTTGGAGTTCCGGTTGAGTCCCGATGTGGGGTGC
ATCCTGTTCATGTGCTTGCTTAGATTCGTGGTGGTCGTCTTGTAAGAGAG
CTTCGCCTTGC

BO07126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 969 CG3995-RA 74..966 911..19 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 1185 CG3995-RA 148..1040 911..19 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17042041..17042614 19..592 2870 100 Plus
3R 32079331 3R 17042669..17042989 591..911 1605 100 Plus
Blast to na_te.dros performed 2015-02-13 00:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 3635..3676 73..32 111 73.8 Minus

BO07126.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:01 Download gff for BO07126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 74..969 15..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:16 Download gff for BO07126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 74..969 15..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:23:37 Download gff for BO07126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 148..1043 15..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:43 Download gff for BO07126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 148..1043 15..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:43 Download gff for BO07126.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17042038..17042613 15..591 99 <- Plus
3R 17042670..17042989 592..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:23:37 Download gff for BO07126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12867760..12868335 15..591 99 <- Plus
arm_3R 12868392..12868711 592..911 100   Plus

BO07126.5prime Sequence

862 bp (760 high quality bases) assembled on 2005-12-03

> BO07126.5prime
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTG

BO07126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 969 CG3995-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 1185 CG3995-RA 68..920 10..862 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17042161..17042614 862..409 2270 100 Minus
3R 32079331 3R 17042669..17043069 410..10 1990 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 17:03:50 has no hits.

BO07126.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:02 Download gff for BO07126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:18 Download gff for BO07126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:42:11 Download gff for BO07126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 63..920 2..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:14 Download gff for BO07126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 63..920 2..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:14 Download gff for BO07126.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17042161..17042613 410..862 100 <- Minus
3R 17042670..17043074 2..409 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:42:11 Download gff for BO07126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12867883..12868335 410..862 100 <- Minus
arm_3R 12868392..12868796 2..409 98   Minus

BO07126.complete Sequence

1000 bp (1000 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630676

> BO07126.complete
GAAGTTATCAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTT
TCCGGGCGGTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAG
CTCTCTTACAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGAT
GCACCCCACATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGC
AGACCACCATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACG
CAAGAGCTGATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCA
GAATCCGACGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAAC
TGTCATCCGAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACC
TGGAGAAGGGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGA
AAAGAATGAGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGG
AGGAAACAATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATT
ATTATGAAGGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATT
TGATGTGGACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCC
TTCAGACTTCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGAC
ATTGACCCGCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAG
TCGACTGGCGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACC
TAGAAATGGTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAA
TTTTTTGTCCTGTACAAGCAGAAGCTGTACGAGGACAAGCGACATCACTT
GGCAATTGAACAGTTAATGGCTGAGAAAATAGAACTGAAAAAGAAACTAT
TGGAAATCGAGCAAAAAAAGCTGTCGCTCAAAGCAAGCTTTCTAGACCAT

BO07126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 969 CG3995-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-RA 1185 CG3995-RA 68..1040 10..982 4850 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17042041..17042614 982..409 2870 100 Minus
3R 32079331 3R 17042669..17043069 410..10 1990 99.8 Minus
Blast to na_te.dros performed 2014-11-28 00:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 3635..3676 928..969 111 73.8 Plus

BO07126.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:52 Download gff for BO07126.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 1..969 17..986 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:17 Download gff for BO07126.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 31..1011 2..986 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:37 Download gff for BO07126.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 75..1040 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:52 Download gff for BO07126.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 31..1011 2..986 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:21 Download gff for BO07126.complete
Subject Subject Range Query Range Percent Splice Strand
CG3995-RA 75..1040 17..984 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:21 Download gff for BO07126.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17042039..17042613 410..984 99 <- Minus
3R 17042670..17043062 17..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:37 Download gff for BO07126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12867761..12868335 410..984 99 <- Minus
arm_3R 12868392..12868784 17..409 100   Minus

BO07126.pep Sequence

Translation from 16 to 1000

> BO07126.pep
MKRKTSEIWCFFRAVDDTFAVCNICKAKLSYKTTTTNLSKHMNRMHPTSG
LNRNSKYKFQPQTTIAIDRNKAKPRNSTQELILLEFVKKHPRLLQNPTWE
TRGNLESLWEELSSELNSHGPPRKDIATWRRALKDWKRFILRKVEKNEMQ
NMPFGTSLTSSEETIATLCRLNEDVSQIIMKVSDDEMHENSTTEFDVDEV
EDVVPEEDGGALQTSAEYVYEPEENKTDIDPLYLQSNKRAALASSRLAEE
ETTLLDKISNNLEMVHDTANSVQLALNEFFVLYKQKLYEDKRHHLAIEQL
MAEKIELKKKLLEIEQKKLSLKASFLDH

BO07126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3995-PA 322 CG3995-PA 1..322 1..322 1663 100 Plus
CG30428-PA 263 CG30428-PA 3..256 73..301 187 25.6 Plus
CG30428-PB 247 CG30428-PB 1..240 87..301 163 25 Plus