Clone BO07139 Report

Search the DGRC for BO07139

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptscramb1-RA
Protein status:BO07139.pep: validated not full length
Sequenced Size:1282

Clone Sequence Records

BO07139.3prime Sequence

938 bp (813 high quality bases) assembled on 2005-12-04

> BO07139.3prime
ATGGTCTAGAAAGCTTGCAAGCATTCCGGGCCTATCGGTCTCTTGGTTTC
CGGCTTTCTCAAAGAACATGGCATCTATGAGGAATGTGGCGCCTAGCAAA
ACGGCCTTCATGCGCACATCCAAGTCCAGTGGGAAATTGATGCCGAAGAA
GTCCGCATCCGTGAAAATTTCACGTGCCAGGCCCGACCACTGTTTCGAGA
TCTTGCCTATCTTCTCACCAGTGAGCGAAACAACATTGAACTCGACGTCG
CCGCAGAGCGAAAAGGTGCAGAAAGGTCCTTCGATGCGCATCACCGTGTC
ACCCACGTGGTTGAGAATGCGGAAGGATGGCGAACAAATGGACCACTCCT
GCTCAATGGTGCCGATAACATTGCCGGGTGGTGCCGAGACCTCGATACTC
TGCAGACAGCAGGGAAACAGACAGGAGGAGCAGGCCAGCGGGCGGTGCAT
GTGGATCACTTCCTGCTGGAAGTTATCAAAGACACGCATGTCGAAGGGAC
GCGCAGGACCACAGCAATTGCGCGTGCAGCAGTCGTTGTCCTCCGCCGCG
AAATAGACCTTCTGACCCAGGGCGTTCTTGATCGTGAACTTGTTGTTGGT
CTCGAAACCAGTGAAGGCCTCGAGCAGCTCGACCTTTTGCTTAACTAAAA
GCTGGTCGATAGTCGTAAGGTACTCCAATCCGCGCGGACAGTTCGGAATT
CCTGTAGGTATACTCATCCAGTCTCCTGCTGGTCCGCCCTGTGGGGCCAT
CCCTGGACCCATTCCCGGTCCCATTCCCGGTTGCGTGACAATGGGCTGTT
GTGGTTGTCCCGGTGGATACCGCCGAATGCGTTTGGTGGTCCTCCTGGTC
CTGCTGGTCCGGGAGGATATCCGCCGAAAGGCTGGGGGCGGTGGTGCTCC
TCCTCCGTAGTGTGGCTGTCCACCANGACCACCTACAT

BO07139.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32056-PA 1251 CG32056-RA 448..1248 819..19 3830 99.1 Minus
CG32056-PB 702 CG32056-RB 1..699 717..19 3320 98.9 Minus
CG32056-PC 999 CG32056-RC 300..996 715..19 3310 98.9 Minus
CG32056-PA 1251 CG32056-RA 388..447 878..819 300 100 Minus
CG32056-PA 1251 CG32056-RA 329..382 938..885 251 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 2049 CG32056-RA 539..1458 938..19 4409 98.7 Minus
scramb1-RB 1655 CG32056-RB 350..1062 731..19 3445 98.9 Minus
scramb1-RC 1640 CG32056-RC 353..1049 715..19 3380 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10221609..10222105 233..729 2410 99 Plus
3L 28110227 3L 10223867..10224080 725..938 934 97.7 Plus
3L 28110227 3L 10221393..10221552 75..234 770 98.8 Plus
3L 28110227 3L 10221076..10221132 19..75 285 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:09:54 has no hits.

BO07139.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:26 Download gff for BO07139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 329..1251 18..938 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:51 Download gff for BO07139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 329..1251 18..938 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:13 Download gff for BO07139.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 539..1458 19..938 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:57 Download gff for BO07139.3prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 539..1458 19..938 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:57 Download gff for BO07139.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10221394..10221552 76..234 98 <- Plus
3L 10221076..10221132 19..75 100 <- Plus
3L 10221611..10222098 235..722 98 <- Plus
3L 10223864..10224080 723..938 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:13 Download gff for BO07139.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10214176..10214232 19..75 100 <- Plus
arm_3L 10214494..10214652 76..234 98 <- Plus
arm_3L 10214711..10215198 235..722 98 <- Plus
arm_3L 10216964..10217180 723..938 96   Plus

BO07139.5prime Sequence

895 bp (878 high quality bases) assembled on 2005-12-03

> BO07139.5prime
GAAGTTATCAGTCGACATGAAGAGTAACGTCAATCAGGGCGGTTACGCCC
CACCCGGTTTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGA
TTCGGCTACCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGC
ACCCGGTCATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAG
GTCCTCAGCCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGA
GAAGCTCCGCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGG
TGGTCAGCCACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAG
GTGGTCCTGGTGGACAGCCACACTACGGAGGAGGAGCACCACCGCCCCAG
GCCTTCGGCGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAA
CGCATTCGGCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGC
AACCGGGAATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGA
CCAGCAGGAGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCG
CGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGG
TCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACG
ATCAAGAACGCCCTGNGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGA
CTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTG
TCTTTGATAACTTCCAGCAAGAAGTGATCCACATGCACCGCCCGCTGGGC
TGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTC

BO07139.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32056-PA 1251 CG32056-RA 1..879 17..895 4251 99.3 Plus
CG32056-PB 702 CG32056-RB 1..330 566..895 1531 98.4 Plus
CG32056-PC 999 CG32056-RC 300..627 568..895 1521 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 2049 CG32056-RA 207..1089 13..895 4314 99.2 Plus
scramb1-RB 1655 CG32056-RB 350..693 552..895 1634 98.3 Plus
scramb1-RC 1640 CG32056-RC 353..680 568..895 1569 98.5 Plus
scramb1-RA 2049 CG32056-RA 472..535 308..371 185 85.9 Plus
scramb1-RA 2049 CG32056-RA 502..565 278..341 185 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10223867..10224237 558..188 1840 99.7 Minus
3L 28110227 3L 10221764..10222105 895..554 1639 98.5 Minus
3L 28110227 3L 10224859..10225034 188..13 865 99.4 Minus
3L 28110227 3L 10224054..10224117 341..278 185 85.9 Minus
3L 28110227 3L 10224084..10224147 371..308 185 85.9 Minus
Blast to na_te.dros performed on 2015-02-12 07:09:36 has no hits.

BO07139.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:27 Download gff for BO07139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:52 Download gff for BO07139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32056-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:15 Download gff for BO07139.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1089 9..895 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:49 Download gff for BO07139.5prime
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1089 9..895 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:49 Download gff for BO07139.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10224860..10225036 9..187 98   Minus
3L 10221764..10222098 561..895 98 <- Minus
3L 10223864..10224237 188..560 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:15 Download gff for BO07139.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10214864..10215198 561..895 98 <- Minus
arm_3L 10216964..10217337 188..560 99 <- Minus
arm_3L 10217960..10218136 9..187 98   Minus

BO07139.complete Sequence

1282 bp (1282 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630682

> BO07139.complete
GAAGTTATCAGTCGACATGAAGAGTAACGTCAATCAGGGCGGTTACGCCC
CACCCGGTTTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGA
TTCGGCTACCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGC
ACCCGGTCATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAG
GTCCTCAGCCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGA
GAAGCTCCGCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGG
TGGTCAGCCACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAG
GTGGTCCTGGTGGACAGCCACACTACGGAGGAGGAGCACCACCGCCCCAG
GCCTTCGGCGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAA
CGCATTCGGCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGC
AACCGGGAATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGA
CCAGCAGGAGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCG
CGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGG
TCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACG
ATCAAGAACGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGA
CTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTG
TCTTTGATAACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGCC
TGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGGC
ACCACCCGGCAATGTTATCGGCACCATTGAGCAGGAGTGGTCCATTTGTT
CGCCATCCTTCCGCATTCTCAACCACGTGGGTGACACGGTGATGCGCATC
GAAGGACCTTTCTGCACCTTTTCGCTCTGCGGCGACGTCGAGTTCAATGT
TGTTTCGCTCACTGGTGAGAAGATAGGCAAGATCTCGAAACAGTGGTCGG
GCCTGGCACGTGAAATTTTCACGGATGCGGACTTCTTCGGCATCAATTTC
CCACTGGACTTGGATGTGCGCATGAAGGCCGTTTTGCTAGGCGCCACATT
CCTCATAGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATA
GGCCCGGAATGCTTGCAAGCTTTCTAGACCAT

BO07139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 1251 CG32056-PA 1..1248 17..1264 6120 99.4 Plus
scramb1-RB 702 CG32056-PB 1..699 566..1264 3390 99 Plus
scramb1-RC 999 CG32056-PC 300..996 568..1264 3380 99 Plus
scramb1-RA 1251 CG32056-PA 262..325 308..371 185 85.9 Plus
scramb1-RA 1251 CG32056-PA 292..355 278..341 185 85.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-RA 2049 CG32056-RA 207..1458 13..1264 6125 99.3 Plus
scramb1-RB 1655 CG32056-RB 350..1062 552..1264 3445 98.9 Plus
scramb1-RC 1640 CG32056-RC 353..1049 568..1264 3380 99 Plus
scramb1-RA 2049 CG32056-RA 502..565 278..341 185 85.9 Plus
scramb1-RA 2049 CG32056-RA 472..535 308..371 185 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10221609..10222105 1050..554 2410 99 Minus
3L 28110227 3L 10223867..10224237 558..188 1840 99.7 Minus
3L 28110227 3L 10224859..10225034 188..13 865 99.4 Minus
3L 28110227 3L 10221393..10221552 1208..1049 770 98.8 Minus
3L 28110227 3L 10221076..10221132 1264..1208 285 100 Minus
3L 28110227 3L 10224054..10224117 341..278 185 85.9 Minus
3L 28110227 3L 10224084..10224147 371..308 185 85.9 Minus
Blast to na_te.dros performed on 2014-11-27 20:42:03 has no hits.

BO07139.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:04 Download gff for BO07139.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 1..1251 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:31 Download gff for BO07139.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1458 9..1264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:30 Download gff for BO07139.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 211..1458 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:04 Download gff for BO07139.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 205..1458 9..1264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:37 Download gff for BO07139.complete
Subject Subject Range Query Range Percent Splice Strand
scramb1-RA 211..1458 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:37 Download gff for BO07139.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10224860..10225030 17..187 100   Minus
3L 10221074..10221132 1208..1266 96 <- Minus
3L 10221394..10221552 1049..1207 98 <- Minus
3L 10221611..10222098 561..1048 98 <- Minus
3L 10223864..10224237 188..560 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:30 Download gff for BO07139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10214174..10214232 1208..1266 96 <- Minus
arm_3L 10214494..10214652 1049..1207 98 <- Minus
arm_3L 10214711..10215198 561..1048 98 <- Minus
arm_3L 10216964..10217337 188..560 99 <- Minus
arm_3L 10217960..10218130 17..187 100   Minus

BO07139.pep Sequence

Translation from 16 to 1282

> BO07139.pep
MKSNVNQGGYAPPGFGSGFQPNAPPAEGFGYPPPTGGHNAPYPPAPGHPQ
PPPPTNYGFMPGPQPAGYAPVPQMPPYGEAPPYGAGQPPYMGGPGGQPPY
AGGPGGQPPYVGGPGGQPHYGGGAPPPQAFGGYPPGPAGPGGPPNAFGGY
PPGQPQQPIVTQPGMGPGMGPGMAPQGGPAGDWMSIPTGIPNCPRGLEYL
TTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRN
CCGPARPFDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNV
IGTIEQEWSICSPSFRILNHVGDTVMRIEGPFCTFSLCGDVEFNVVSLTG
EKIGKISKQWSGLAREIFTDADFFGINFPLDLDVRMKAVLLGATFLIDAM
FFEKAGNQETDRPGMLASFLDH

BO07139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
scramb1-PA 416 CG32056-PA 1..416 1..416 2352 100 Plus
scramb1-PB 233 CG32056-PB 1..233 184..416 1250 100 Plus
scramb1-PC 332 CG32056-PC 101..332 185..416 1245 100 Plus
scramb2-PA 263 CG1893-PA 40..263 182..404 761 59.8 Plus
CG9084-PB 275 CG9084-PB 67..272 196..403 236 29.1 Plus