Clone Sequence Records
BO07139.3prime Sequence
938 bp (813 high quality bases) assembled on 2005-12-04
> BO07139.3prime
ATGGTCTAGAAAGCTTGCAAGCATTCCGGGCCTATCGGTCTCTTGGTTTC
CGGCTTTCTCAAAGAACATGGCATCTATGAGGAATGTGGCGCCTAGCAAA
ACGGCCTTCATGCGCACATCCAAGTCCAGTGGGAAATTGATGCCGAAGAA
GTCCGCATCCGTGAAAATTTCACGTGCCAGGCCCGACCACTGTTTCGAGA
TCTTGCCTATCTTCTCACCAGTGAGCGAAACAACATTGAACTCGACGTCG
CCGCAGAGCGAAAAGGTGCAGAAAGGTCCTTCGATGCGCATCACCGTGTC
ACCCACGTGGTTGAGAATGCGGAAGGATGGCGAACAAATGGACCACTCCT
GCTCAATGGTGCCGATAACATTGCCGGGTGGTGCCGAGACCTCGATACTC
TGCAGACAGCAGGGAAACAGACAGGAGGAGCAGGCCAGCGGGCGGTGCAT
GTGGATCACTTCCTGCTGGAAGTTATCAAAGACACGCATGTCGAAGGGAC
GCGCAGGACCACAGCAATTGCGCGTGCAGCAGTCGTTGTCCTCCGCCGCG
AAATAGACCTTCTGACCCAGGGCGTTCTTGATCGTGAACTTGTTGTTGGT
CTCGAAACCAGTGAAGGCCTCGAGCAGCTCGACCTTTTGCTTAACTAAAA
GCTGGTCGATAGTCGTAAGGTACTCCAATCCGCGCGGACAGTTCGGAATT
CCTGTAGGTATACTCATCCAGTCTCCTGCTGGTCCGCCCTGTGGGGCCAT
CCCTGGACCCATTCCCGGTCCCATTCCCGGTTGCGTGACAATGGGCTGTT
GTGGTTGTCCCGGTGGATACCGCCGAATGCGTTTGGTGGTCCTCCTGGTC
CTGCTGGTCCGGGAGGATATCCGCCGAAAGGCTGGGGGCGGTGGTGCTCC
TCCTCCGTAGTGTGGCTGTCCACCANGACCACCTACAT
BO07139.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32056-PA | 1251 | CG32056-RA | 448..1248 | 819..19 | 3830 | 99.1 | Minus |
CG32056-PB | 702 | CG32056-RB | 1..699 | 717..19 | 3320 | 98.9 | Minus |
CG32056-PC | 999 | CG32056-RC | 300..996 | 715..19 | 3310 | 98.9 | Minus |
CG32056-PA | 1251 | CG32056-RA | 388..447 | 878..819 | 300 | 100 | Minus |
CG32056-PA | 1251 | CG32056-RA | 329..382 | 938..885 | 251 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-RA | 2049 | CG32056-RA | 539..1458 | 938..19 | 4409 | 98.7 | Minus |
scramb1-RB | 1655 | CG32056-RB | 350..1062 | 731..19 | 3445 | 98.9 | Minus |
scramb1-RC | 1640 | CG32056-RC | 353..1049 | 715..19 | 3380 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10221609..10222105 | 233..729 | 2410 | 99 | Plus |
3L | 28110227 | 3L | 10223867..10224080 | 725..938 | 934 | 97.7 | Plus |
3L | 28110227 | 3L | 10221393..10221552 | 75..234 | 770 | 98.8 | Plus |
3L | 28110227 | 3L | 10221076..10221132 | 19..75 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:09:54 has no hits.
BO07139.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:26 Download gff for
BO07139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32056-PA | 329..1251 | 18..938 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:51 Download gff for
BO07139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32056-PA | 329..1251 | 18..938 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:13 Download gff for
BO07139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 539..1458 | 19..938 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:57 Download gff for
BO07139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 539..1458 | 19..938 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:57 Download gff for
BO07139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10221394..10221552 | 76..234 | 98 | <- | Plus |
3L | 10221076..10221132 | 19..75 | 100 | <- | Plus |
3L | 10221611..10222098 | 235..722 | 98 | <- | Plus |
3L | 10223864..10224080 | 723..938 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:13 Download gff for
BO07139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10214176..10214232 | 19..75 | 100 | <- | Plus |
arm_3L | 10214494..10214652 | 76..234 | 98 | <- | Plus |
arm_3L | 10214711..10215198 | 235..722 | 98 | <- | Plus |
arm_3L | 10216964..10217180 | 723..938 | 96 | | Plus |
BO07139.5prime Sequence
895 bp (878 high quality bases) assembled on 2005-12-03
> BO07139.5prime
GAAGTTATCAGTCGACATGAAGAGTAACGTCAATCAGGGCGGTTACGCCC
CACCCGGTTTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGA
TTCGGCTACCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGC
ACCCGGTCATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAG
GTCCTCAGCCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGA
GAAGCTCCGCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGG
TGGTCAGCCACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAG
GTGGTCCTGGTGGACAGCCACACTACGGAGGAGGAGCACCACCGCCCCAG
GCCTTCGGCGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAA
CGCATTCGGCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGC
AACCGGGAATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGA
CCAGCAGGAGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCG
CGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGG
TCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACG
ATCAAGAACGCCCTGNGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGA
CTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTG
TCTTTGATAACTTCCAGCAAGAAGTGATCCACATGCACCGCCCGCTGGGC
TGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTC
BO07139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32056-PA | 1251 | CG32056-RA | 1..879 | 17..895 | 4251 | 99.3 | Plus |
CG32056-PB | 702 | CG32056-RB | 1..330 | 566..895 | 1531 | 98.4 | Plus |
CG32056-PC | 999 | CG32056-RC | 300..627 | 568..895 | 1521 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-RA | 2049 | CG32056-RA | 207..1089 | 13..895 | 4314 | 99.2 | Plus |
scramb1-RB | 1655 | CG32056-RB | 350..693 | 552..895 | 1634 | 98.3 | Plus |
scramb1-RC | 1640 | CG32056-RC | 353..680 | 568..895 | 1569 | 98.5 | Plus |
scramb1-RA | 2049 | CG32056-RA | 472..535 | 308..371 | 185 | 85.9 | Plus |
scramb1-RA | 2049 | CG32056-RA | 502..565 | 278..341 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10223867..10224237 | 558..188 | 1840 | 99.7 | Minus |
3L | 28110227 | 3L | 10221764..10222105 | 895..554 | 1639 | 98.5 | Minus |
3L | 28110227 | 3L | 10224859..10225034 | 188..13 | 865 | 99.4 | Minus |
3L | 28110227 | 3L | 10224054..10224117 | 341..278 | 185 | 85.9 | Minus |
3L | 28110227 | 3L | 10224084..10224147 | 371..308 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:09:36 has no hits.
BO07139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:27 Download gff for
BO07139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32056-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:52 Download gff for
BO07139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32056-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:15 Download gff for
BO07139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 205..1089 | 9..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:49 Download gff for
BO07139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 205..1089 | 9..895 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:49 Download gff for
BO07139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10224860..10225036 | 9..187 | 98 | | Minus |
3L | 10221764..10222098 | 561..895 | 98 | <- | Minus |
3L | 10223864..10224237 | 188..560 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:15 Download gff for
BO07139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10214864..10215198 | 561..895 | 98 | <- | Minus |
arm_3L | 10216964..10217337 | 188..560 | 99 | <- | Minus |
arm_3L | 10217960..10218136 | 9..187 | 98 | | Minus |
BO07139.complete Sequence
1282 bp (1282 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630682
> BO07139.complete
GAAGTTATCAGTCGACATGAAGAGTAACGTCAATCAGGGCGGTTACGCCC
CACCCGGTTTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGA
TTCGGCTACCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGC
ACCCGGTCATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAG
GTCCTCAGCCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGA
GAAGCTCCGCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGG
TGGTCAGCCACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAG
GTGGTCCTGGTGGACAGCCACACTACGGAGGAGGAGCACCACCGCCCCAG
GCCTTCGGCGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAA
CGCATTCGGCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGC
AACCGGGAATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGA
CCAGCAGGAGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCG
CGGATTGGAGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGG
TCGAGCTGCTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACG
ATCAAGAACGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGA
CTGCTGCACGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTG
TCTTTGATAACTTCCAGCAGGAAGTGATCCACATGCACCGCCCGCTGGCC
TGCTCCTCCTGTCTGTTTCCCTGCTGTCTGCAGAGTATCGAGGTCTCGGC
ACCACCCGGCAATGTTATCGGCACCATTGAGCAGGAGTGGTCCATTTGTT
CGCCATCCTTCCGCATTCTCAACCACGTGGGTGACACGGTGATGCGCATC
GAAGGACCTTTCTGCACCTTTTCGCTCTGCGGCGACGTCGAGTTCAATGT
TGTTTCGCTCACTGGTGAGAAGATAGGCAAGATCTCGAAACAGTGGTCGG
GCCTGGCACGTGAAATTTTCACGGATGCGGACTTCTTCGGCATCAATTTC
CCACTGGACTTGGATGTGCGCATGAAGGCCGTTTTGCTAGGCGCCACATT
CCTCATAGATGCCATGTTCTTTGAGAAAGCCGGAAACCAAGAGACCGATA
GGCCCGGAATGCTTGCAAGCTTTCTAGACCAT
BO07139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-RA | 1251 | CG32056-PA | 1..1248 | 17..1264 | 6120 | 99.4 | Plus |
scramb1-RB | 702 | CG32056-PB | 1..699 | 566..1264 | 3390 | 99 | Plus |
scramb1-RC | 999 | CG32056-PC | 300..996 | 568..1264 | 3380 | 99 | Plus |
scramb1-RA | 1251 | CG32056-PA | 262..325 | 308..371 | 185 | 85.9 | Plus |
scramb1-RA | 1251 | CG32056-PA | 292..355 | 278..341 | 185 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-RA | 2049 | CG32056-RA | 207..1458 | 13..1264 | 6125 | 99.3 | Plus |
scramb1-RB | 1655 | CG32056-RB | 350..1062 | 552..1264 | 3445 | 98.9 | Plus |
scramb1-RC | 1640 | CG32056-RC | 353..1049 | 568..1264 | 3380 | 99 | Plus |
scramb1-RA | 2049 | CG32056-RA | 502..565 | 278..341 | 185 | 85.9 | Plus |
scramb1-RA | 2049 | CG32056-RA | 472..535 | 308..371 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10221609..10222105 | 1050..554 | 2410 | 99 | Minus |
3L | 28110227 | 3L | 10223867..10224237 | 558..188 | 1840 | 99.7 | Minus |
3L | 28110227 | 3L | 10224859..10225034 | 188..13 | 865 | 99.4 | Minus |
3L | 28110227 | 3L | 10221393..10221552 | 1208..1049 | 770 | 98.8 | Minus |
3L | 28110227 | 3L | 10221076..10221132 | 1264..1208 | 285 | 100 | Minus |
3L | 28110227 | 3L | 10224054..10224117 | 341..278 | 185 | 85.9 | Minus |
3L | 28110227 | 3L | 10224084..10224147 | 371..308 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:42:03 has no hits.
BO07139.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:04 Download gff for
BO07139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 1..1251 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:31 Download gff for
BO07139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 205..1458 | 9..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:30 Download gff for
BO07139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 211..1458 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:04 Download gff for
BO07139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 205..1458 | 9..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:37 Download gff for
BO07139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scramb1-RA | 211..1458 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:37 Download gff for
BO07139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10224860..10225030 | 17..187 | 100 | | Minus |
3L | 10221074..10221132 | 1208..1266 | 96 | <- | Minus |
3L | 10221394..10221552 | 1049..1207 | 98 | <- | Minus |
3L | 10221611..10222098 | 561..1048 | 98 | <- | Minus |
3L | 10223864..10224237 | 188..560 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:30 Download gff for
BO07139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10214174..10214232 | 1208..1266 | 96 | <- | Minus |
arm_3L | 10214494..10214652 | 1049..1207 | 98 | <- | Minus |
arm_3L | 10214711..10215198 | 561..1048 | 98 | <- | Minus |
arm_3L | 10216964..10217337 | 188..560 | 99 | <- | Minus |
arm_3L | 10217960..10218130 | 17..187 | 100 | | Minus |
BO07139.pep Sequence
Translation from 16 to 1282
> BO07139.pep
MKSNVNQGGYAPPGFGSGFQPNAPPAEGFGYPPPTGGHNAPYPPAPGHPQ
PPPPTNYGFMPGPQPAGYAPVPQMPPYGEAPPYGAGQPPYMGGPGGQPPY
AGGPGGQPPYVGGPGGQPHYGGGAPPPQAFGGYPPGPAGPGGPPNAFGGY
PPGQPQQPIVTQPGMGPGMGPGMAPQGGPAGDWMSIPTGIPNCPRGLEYL
TTIDQLLVKQKVELLEAFTGFETNNKFTIKNALGQKVYFAAEDNDCCTRN
CCGPARPFDMRVFDNFQQEVIHMHRPLACSSCLFPCCLQSIEVSAPPGNV
IGTIEQEWSICSPSFRILNHVGDTVMRIEGPFCTFSLCGDVEFNVVSLTG
EKIGKISKQWSGLAREIFTDADFFGINFPLDLDVRMKAVLLGATFLIDAM
FFEKAGNQETDRPGMLASFLDH
BO07139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scramb1-PA | 416 | CG32056-PA | 1..416 | 1..416 | 2352 | 100 | Plus |
scramb1-PB | 233 | CG32056-PB | 1..233 | 184..416 | 1250 | 100 | Plus |
scramb1-PC | 332 | CG32056-PC | 101..332 | 185..416 | 1245 | 100 | Plus |
scramb2-PA | 263 | CG1893-PA | 40..263 | 182..404 | 761 | 59.8 | Plus |
CG9084-PB | 275 | CG9084-PB | 67..272 | 196..403 | 236 | 29.1 | Plus |