Clone Sequence Records
BO07140.3prime Sequence
914 bp (842 high quality bases) assembled on 2005-12-04
> BO07140.3prime
ATGGTCTAGAAAGCTTGCAATGTTGTTCTCCTTGGCGCCCTTGGCCCCGG
CACCGGAACCTGATCCCGAACCGGATCCGGCATTAGCTGTCGCTCCGGCA
TCATTATCGCTCTTGTTGTTACTGTTGTTGTTGCTATTGGTATTAGACGC
CGTCGACTCCTCGCCATCAGCTCCGTCGCCCTTTTCCTTTTCGTCCTTGA
TCTCGCTGGACGTCTCTGAGGATGCCTTGTTGCTGTTGGTGTCCTTGTCG
AGACGCGGCCGCTTCCGCTGACCCTTGTACGAACGGTTATCCCTCCGACC
GCCCTCGCCCTCATCCTCCGAATCGGAGTACTCGTTCTCGGGCACAATGC
GCTTGTCCTTGTCGCTCTGCGGCAGGCGATCATCCTTGTCGACCTTGTCC
TCGTCGTCGGACTCATCGTTGATGGCATCCTCGGGAATCGCTTGGATTTG
AACGCCCGGAGCGTGAGGCAGCATGCGCAGGTTCTCGAACAGACGGTTCT
TGATCTTCTCCAGGTACTCGGATGTATTCTGATTCGTCATATTGCTGGGA
CTAATGTGCAGCTTAAAATCGGGCCCAAAGTACTCGAAGTAATCGTTGTA
GGGCAGTTCGTTGGCTATCTCCACGGCCAGTGCAACGGAGGTCTCATAGG
TCCAGCAGCGGGATACATTACGAATGGTATAACCACCACCGCCGACCATC
AGGAATGGCAGATTATATTTCTTCACGAACTCCACGCATTTGCCGTGACC
CTTGACGGTGAGATTGAAGCAACCTAACCGATCGCCAGTCAGCGAATCGG
CGCCACACTGCAGCACCACGGCTGCCGGCTGGAATGTTTCCATCACCTTG
CTGATAATGGGCACAAATATGCTCTCGTACGCATCATCATCCATGCCATC
GCGCAGGGGTATAT
BO07140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7471-PA | 1566 | Rpd3-RA | 668..1563 | 914..19 | 4280 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 2124 | CG7471-RA | 874..1769 | 914..19 | 4360 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4628122..4628857 | 914..179 | 3575 | 99 | Minus |
3L | 28110227 | 3L | 4628951..4629112 | 180..19 | 795 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-12 15:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2415 | 144..109 | 126 | 83.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2391 | 141..80 | 114 | 66.7 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 523..559 | 141..105 | 113 | 78.4 | Minus |
BO07140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:28 Download gff for
BO07140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-PA | 668..1566 | 16..914 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:53 Download gff for
BO07140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7471-PA | 668..1566 | 16..914 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:56 Download gff for
BO07140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 874..1769 | 19..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:43 Download gff for
BO07140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 874..1769 | 19..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:43 Download gff for
BO07140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4628122..4628856 | 180..914 | 99 | -> | Minus |
3L | 4628952..4629112 | 19..179 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:56 Download gff for
BO07140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4628122..4628856 | 180..914 | 99 | -> | Minus |
arm_3L | 4628952..4629112 | 19..179 | 99 | | Minus |
BO07140.5prime Sequence
905 bp (791 high quality bases) assembled on 2005-12-04
> BO07140.5prime
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTCAATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAGTTCGTGAAGAAATATAATCTGCCATTCCTGAT
GGTCG
BO07140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7471-PA | 1566 | Rpd3-RA | 1..889 | 17..905 | 4170 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 2124 | CG7471-RA | 207..1095 | 17..905 | 4280 | 98.8 | Plus |
Hdac3-RA | 1660 | CG2128-RA | 689..880 | 425..616 | 285 | 77.2 | Plus |
CG45100-RA | 1660 | CG45100-RA | 689..880 | 425..616 | 285 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4627611..4628343 | 173..905 | 3500 | 98.5 | Plus |
3L | 28110227 | 3L | 4627420..4627532 | 60..172 | 565 | 100 | Plus |
3R | 32079331 | 3R | 5473590..5473781 | 616..425 | 285 | 76.6 | Minus |
3L | 28110227 | 3L | 4626940..4626983 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 09:55:57 has no hits.
BO07140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:29 Download gff for
BO07140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-PA | 1..889 | 17..905 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:54 Download gff for
BO07140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7471-PA | 1..889 | 17..905 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:44 Download gff for
BO07140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1095 | 17..905 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:38 Download gff for
BO07140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1095 | 17..905 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:38 Download gff for
BO07140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
3L | 4627611..4628343 | 173..905 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:44 Download gff for
BO07140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
arm_3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
arm_3L | 4627611..4628343 | 173..905 | 98 | | Plus |
BO07140.complete Sequence
1597 bp (1597 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630683
> BO07140.complete
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTCAATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAGTTCGTGAAGAAATATAATCTGCCATTCCTGAT
GGTCGGCGGTGGTGGTTATACCATTCGTAATGTATCCCGCTGCTGGACCT
ATGAGACCTCCGTTGCACTGGCCGTGGAGATAGCCAACGAACTGCCCTAC
AACGATTACTTCGAGTACTTTGGGCCCGATTTTAAGCTGCACATTAGTCC
CAGCAATATGACGAATCAGAATACATCCGAGTACCTGGAGAAGATCAAGA
ACCGTCTGTTCGAGAACCTGCGCATGCTGCCTCACGCTCCGGGCGTTCAA
ATCCAAGCGATTCCCGAGGATGCCATCAACGATGAGTCCGACGACGAGGA
CAAGGTCGACAAGGATGATCGCCTGCCGCAGAGCGACAAGGACAAGCGCA
TTGTGCCCGAGAACGAGTACTCCGATTCGGAGGATGAGGGCGAGGGCGGT
CGGAGGGATAACCGTTCGTACAAGGGTCAGCGGAAGCGGCCGCGTCTCGA
CAAGGACACCAACAGCAACAAGGCATCCTCAGAGACGTCCAGCGAGATCA
AGGACGAAAAGGAAAAGGGCGACGGAGCTGATGGCGAGGAGTCGACGGCG
TCTAATACCAATAGCAACAACAACAGTAACAACAAGAGCGATAATGATGC
CGGAGCGACAGCTAATGCCGGATCCGGTTCGGGATCAGGTTCCGGTGCCG
GGGCCAAGGGCGCCAAGGAGAACAACATTGCAAGCTTTCTAGACCAT
BO07140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 1566 | CG7471-PA | 1..1563 | 17..1579 | 7605 | 99.1 | Plus |
Hdac3-RA | 1317 | CG2128-PA | 412..603 | 425..616 | 285 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-RA | 2124 | CG7471-RA | 207..1769 | 17..1579 | 7605 | 99.1 | Plus |
Hdac3-RA | 1660 | CG2128-RA | 689..880 | 425..616 | 285 | 76.6 | Plus |
CG45100-RA | 1660 | CG45100-RA | 689..880 | 425..616 | 285 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4627611..4628857 | 173..1419 | 6040 | 99 | Plus |
3L | 28110227 | 3L | 4628951..4629112 | 1418..1579 | 795 | 99.4 | Plus |
3L | 28110227 | 3L | 4627420..4627532 | 60..172 | 565 | 100 | Plus |
3R | 32079331 | 3R | 5473590..5473781 | 616..425 | 285 | 76.6 | Minus |
3L | 28110227 | 3L | 4626940..4626983 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2415 | 1454..1489 | 126 | 83.3 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 523..559 | 1457..1493 | 113 | 78.4 | Plus |
BO07140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:05 Download gff for
BO07140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 1..1566 | 17..1582 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:33 Download gff for
BO07140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 224..1786 | 17..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:08 Download gff for
BO07140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1769 | 17..1581 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:06 Download gff for
BO07140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 224..1786 | 17..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:49 Download gff for
BO07140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpd3-RA | 207..1769 | 17..1581 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:49 Download gff for
BO07140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
3L | 4627611..4628856 | 173..1418 | 98 | -> | Plus |
3L | 4628952..4629112 | 1419..1581 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:08 Download gff for
BO07140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4626940..4626982 | 17..59 | 100 | -> | Plus |
arm_3L | 4627420..4627532 | 60..172 | 100 | -> | Plus |
arm_3L | 4627611..4628856 | 173..1418 | 98 | -> | Plus |
arm_3L | 4628952..4629112 | 1419..1581 | 98 | | Plus |
BO07140.pep Sequence
Translation from 16 to 1597
> BO07140.pep
MQSHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKME
IYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV
FDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCY
VNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYG
EYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETF
QPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGG
YTIRNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTN
QNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPEDAINDESDDEDKVDKD
DRLPQSDKDKRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPRLDKDTNS
NKASSETSSEIKDEKEKGDGADGEESTASNTNSNNNSNNKSDNDAGATAN
AGSGSGSGSGAGAKGAKENNIASFLDH
BO07140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpd3-PA | 521 | CG7471-PA | 1..521 | 1..521 | 2785 | 100 | Plus |
Hdac3-PA | 438 | CG2128-PA | 4..429 | 7..424 | 1390 | 57.5 | Plus |
HDAC6-PD | 883 | CG6170-PD | 458..776 | 8..318 | 329 | 30.2 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 540..858 | 8..318 | 329 | 30.2 | Plus |
HDAC6-PE | 1108 | CG6170-PE | 513..831 | 8..318 | 329 | 30.2 | Plus |
HDAC6-PD | 883 | CG6170-PD | 81..296 | 57..266 | 250 | 31.5 | Plus |
HDAC6-PF | 1022 | CG6170-PF | 163..378 | 57..266 | 250 | 31.5 | Plus |