Clone BO07140 Report

Search the DGRC for BO07140

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptRpd3-RA
Protein status:BO07140.pep: validated full length
Sequenced Size:1597

Clone Sequence Records

BO07140.3prime Sequence

914 bp (842 high quality bases) assembled on 2005-12-04

> BO07140.3prime
ATGGTCTAGAAAGCTTGCAATGTTGTTCTCCTTGGCGCCCTTGGCCCCGG
CACCGGAACCTGATCCCGAACCGGATCCGGCATTAGCTGTCGCTCCGGCA
TCATTATCGCTCTTGTTGTTACTGTTGTTGTTGCTATTGGTATTAGACGC
CGTCGACTCCTCGCCATCAGCTCCGTCGCCCTTTTCCTTTTCGTCCTTGA
TCTCGCTGGACGTCTCTGAGGATGCCTTGTTGCTGTTGGTGTCCTTGTCG
AGACGCGGCCGCTTCCGCTGACCCTTGTACGAACGGTTATCCCTCCGACC
GCCCTCGCCCTCATCCTCCGAATCGGAGTACTCGTTCTCGGGCACAATGC
GCTTGTCCTTGTCGCTCTGCGGCAGGCGATCATCCTTGTCGACCTTGTCC
TCGTCGTCGGACTCATCGTTGATGGCATCCTCGGGAATCGCTTGGATTTG
AACGCCCGGAGCGTGAGGCAGCATGCGCAGGTTCTCGAACAGACGGTTCT
TGATCTTCTCCAGGTACTCGGATGTATTCTGATTCGTCATATTGCTGGGA
CTAATGTGCAGCTTAAAATCGGGCCCAAAGTACTCGAAGTAATCGTTGTA
GGGCAGTTCGTTGGCTATCTCCACGGCCAGTGCAACGGAGGTCTCATAGG
TCCAGCAGCGGGATACATTACGAATGGTATAACCACCACCGCCGACCATC
AGGAATGGCAGATTATATTTCTTCACGAACTCCACGCATTTGCCGTGACC
CTTGACGGTGAGATTGAAGCAACCTAACCGATCGCCAGTCAGCGAATCGG
CGCCACACTGCAGCACCACGGCTGCCGGCTGGAATGTTTCCATCACCTTG
CTGATAATGGGCACAAATATGCTCTCGTACGCATCATCATCCATGCCATC
GCGCAGGGGTATAT

BO07140.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7471-PA 1566 Rpd3-RA 668..1563 914..19 4280 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 2124 CG7471-RA 874..1769 914..19 4360 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4628122..4628857 914..179 3575 99 Minus
3L 28110227 3L 4628951..4629112 180..19 795 99.4 Minus
Blast to na_te.dros performed 2015-02-12 15:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2415 144..109 126 83.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2391 141..80 114 66.7 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 523..559 141..105 113 78.4 Minus

BO07140.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:28 Download gff for BO07140.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-PA 668..1566 16..914 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:53 Download gff for BO07140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7471-PA 668..1566 16..914 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:15:56 Download gff for BO07140.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 874..1769 19..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:43 Download gff for BO07140.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 874..1769 19..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:43 Download gff for BO07140.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4628122..4628856 180..914 99 -> Minus
3L 4628952..4629112 19..179 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:15:56 Download gff for BO07140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4628122..4628856 180..914 99 -> Minus
arm_3L 4628952..4629112 19..179 99   Minus

BO07140.5prime Sequence

905 bp (791 high quality bases) assembled on 2005-12-04

> BO07140.5prime
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTCAATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAGTTCGTGAAGAAATATAATCTGCCATTCCTGAT
GGTCG

BO07140.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7471-PA 1566 Rpd3-RA 1..889 17..905 4170 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 2124 CG7471-RA 207..1095 17..905 4280 98.8 Plus
Hdac3-RA 1660 CG2128-RA 689..880 425..616 285 77.2 Plus
CG45100-RA 1660 CG45100-RA 689..880 425..616 285 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4627611..4628343 173..905 3500 98.5 Plus
3L 28110227 3L 4627420..4627532 60..172 565 100 Plus
3R 32079331 3R 5473590..5473781 616..425 285 76.6 Minus
3L 28110227 3L 4626940..4626983 17..60 220 100 Plus
Blast to na_te.dros performed on 2015-02-12 09:55:57 has no hits.

BO07140.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:29 Download gff for BO07140.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-PA 1..889 17..905 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:54 Download gff for BO07140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7471-PA 1..889 17..905 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:44 Download gff for BO07140.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1095 17..905 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:38 Download gff for BO07140.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1095 17..905 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:38 Download gff for BO07140.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4626940..4626982 17..59 100 -> Plus
3L 4627420..4627532 60..172 100 -> Plus
3L 4627611..4628343 173..905 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:44 Download gff for BO07140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4626940..4626982 17..59 100 -> Plus
arm_3L 4627420..4627532 60..172 100 -> Plus
arm_3L 4627611..4628343 173..905 98   Plus

BO07140.complete Sequence

1597 bp (1597 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630683

> BO07140.complete
GAAGTTATCAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACT
ACTACGACAGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATG
AAGCCCCATCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCT
CTATCGAAAAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGA
TGACCAAGTTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGG
CCGGACAACATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGG
CGAAGATTGTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCG
CCGGAGGATCCGTAGCTGCGGCCGTAAAACTGAATAAGCAAGCCTCGGAG
ATTTGCATCAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGC
CTCGGGCTTCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGC
TTAAATACCATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGC
GATGGCGTGGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAG
CTTCCACAAGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACA
TTGGCGCCGGCAAGGGAAAGTATTATGCGGTTAATATACCCCTGCGCGAT
GGCATGGATGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAA
GGTGATGGAAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCG
ATTCGCTGACTGGCGATCGGTTAGGTTGCTTCAATCTCACCGTCAAGGGT
CACGGCAAATGCGTGGAGTTCGTGAAGAAATATAATCTGCCATTCCTGAT
GGTCGGCGGTGGTGGTTATACCATTCGTAATGTATCCCGCTGCTGGACCT
ATGAGACCTCCGTTGCACTGGCCGTGGAGATAGCCAACGAACTGCCCTAC
AACGATTACTTCGAGTACTTTGGGCCCGATTTTAAGCTGCACATTAGTCC
CAGCAATATGACGAATCAGAATACATCCGAGTACCTGGAGAAGATCAAGA
ACCGTCTGTTCGAGAACCTGCGCATGCTGCCTCACGCTCCGGGCGTTCAA
ATCCAAGCGATTCCCGAGGATGCCATCAACGATGAGTCCGACGACGAGGA
CAAGGTCGACAAGGATGATCGCCTGCCGCAGAGCGACAAGGACAAGCGCA
TTGTGCCCGAGAACGAGTACTCCGATTCGGAGGATGAGGGCGAGGGCGGT
CGGAGGGATAACCGTTCGTACAAGGGTCAGCGGAAGCGGCCGCGTCTCGA
CAAGGACACCAACAGCAACAAGGCATCCTCAGAGACGTCCAGCGAGATCA
AGGACGAAAAGGAAAAGGGCGACGGAGCTGATGGCGAGGAGTCGACGGCG
TCTAATACCAATAGCAACAACAACAGTAACAACAAGAGCGATAATGATGC
CGGAGCGACAGCTAATGCCGGATCCGGTTCGGGATCAGGTTCCGGTGCCG
GGGCCAAGGGCGCCAAGGAGAACAACATTGCAAGCTTTCTAGACCAT

BO07140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 1566 CG7471-PA 1..1563 17..1579 7605 99.1 Plus
Hdac3-RA 1317 CG2128-PA 412..603 425..616 285 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-RA 2124 CG7471-RA 207..1769 17..1579 7605 99.1 Plus
Hdac3-RA 1660 CG2128-RA 689..880 425..616 285 76.6 Plus
CG45100-RA 1660 CG45100-RA 689..880 425..616 285 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4627611..4628857 173..1419 6040 99 Plus
3L 28110227 3L 4628951..4629112 1418..1579 795 99.4 Plus
3L 28110227 3L 4627420..4627532 60..172 565 100 Plus
3R 32079331 3R 5473590..5473781 616..425 285 76.6 Minus
3L 28110227 3L 4626940..4626983 17..60 220 100 Plus
Blast to na_te.dros performed 2014-11-28 00:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2415 1454..1489 126 83.3 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 523..559 1457..1493 113 78.4 Plus

BO07140.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:05 Download gff for BO07140.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 1..1566 17..1582 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:33 Download gff for BO07140.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 224..1786 17..1579 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:08 Download gff for BO07140.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1769 17..1581 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:06 Download gff for BO07140.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 224..1786 17..1579 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:49 Download gff for BO07140.complete
Subject Subject Range Query Range Percent Splice Strand
Rpd3-RA 207..1769 17..1581 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:49 Download gff for BO07140.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4626940..4626982 17..59 100 -> Plus
3L 4627420..4627532 60..172 100 -> Plus
3L 4627611..4628856 173..1418 98 -> Plus
3L 4628952..4629112 1419..1581 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:08 Download gff for BO07140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4626940..4626982 17..59 100 -> Plus
arm_3L 4627420..4627532 60..172 100 -> Plus
arm_3L 4627611..4628856 173..1418 98 -> Plus
arm_3L 4628952..4629112 1419..1581 98   Plus

BO07140.pep Sequence

Translation from 16 to 1597

> BO07140.pep
MQSHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKME
IYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPV
FDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCY
VNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYG
EYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFVPIISKVMETF
QPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGG
YTIRNVSRCWTYETSVALAVEIANELPYNDYFEYFGPDFKLHISPSNMTN
QNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPEDAINDESDDEDKVDKD
DRLPQSDKDKRIVPENEYSDSEDEGEGGRRDNRSYKGQRKRPRLDKDTNS
NKASSETSSEIKDEKEKGDGADGEESTASNTNSNNNSNNKSDNDAGATAN
AGSGSGSGSGAGAKGAKENNIASFLDH

BO07140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rpd3-PA 521 CG7471-PA 1..521 1..521 2785 100 Plus
Hdac3-PA 438 CG2128-PA 4..429 7..424 1390 57.5 Plus
HDAC6-PD 883 CG6170-PD 458..776 8..318 329 30.2 Plus
HDAC6-PF 1022 CG6170-PF 540..858 8..318 329 30.2 Plus
HDAC6-PE 1108 CG6170-PE 513..831 8..318 329 30.2 Plus
HDAC6-PD 883 CG6170-PD 81..296 57..266 250 31.5 Plus
HDAC6-PF 1022 CG6170-PF 163..378 57..266 250 31.5 Plus