Clone BO07145 Report

Search the DGRC for BO07145

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptsina-RA
Protein status:BO07145.pep: validated full length
Sequenced Size:976

Clone Sequence Records

BO07145.3prime Sequence

786 bp (781 high quality bases) assembled on 2005-12-04

> BO07145.3prime
ATGGTCTAGAAAGCTTGCGACCAGAGATATGGTCACGTTAATGCCCAGGT
TGCCATTGTCGGCGAACAATTGCGCAATCGACGTGTCGAACACCAGGCAG
TCCGAGTTGTGAATTGCGGAAGCGACGCCCTCGTGGATCGAACGCGGCAT
TGCCTCCCAGGTGAGCCGGCGTCGGTTTCCGTTCAACTCCAGGCGATAGA
CAAAGTTCTCCGCTTCCTTGCGCGACCCGATCAGCTGAACGATGGCAAAG
AACTGCTGGTGTCCGTCGTACTTCTCCTGCTTCTCCAGCACGAGCATAAA
ATGGTGGCCGAAGCAGGACTGCATCATTACCCAATCGACGGCGCCGGGCA
GGTTGATGTCGGTGGCCAGGAACACGATGTCCTCGCCCTGCAGCGTTGTG
ATGCTCTTGTGCGACATCATCAGATGCTGCATGACTAGGTCAAGCGGGCC
CTGCCACTTACAGCTGGCGCCCGGGCACGGACACAGGTAGGGCCGGCACT
CGCACGTCTCCTCGTGTTCTGTCTTTTCCGTGTAAACCAGCGAGGCGGTG
CATCCGTAGCCGGAGTGCTTGCACGGGAACTTGACGTTCGAGGCAACCTT
CTCCATCGCCAGGTTGCGGATATTCGCCAGCGGACCGCGGCAGGTGGGGC
AGCAGGTGAGCTTGGAGCGACAGGACACGCACACCAGGTGCCCGCTGGAG
CACTGCAGGATCGGCGGTAGCACATAGTCAAAGCACACGGGGCATTCAAA
CAGCGAGGTCAAGTCGGCGGACATGCCCGCATCACC

BO07145.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9949-PA 945 sina-RA 175..942 786..19 3840 100 Minus
CG9949-PB 945 sina-RB 175..942 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 3124 CG9949-RC 1004..1771 786..19 3840 100 Minus
sina-RB 2482 CG9949-RB 362..1129 786..19 3840 100 Minus
sina-RA 3191 CG9949-RA 1071..1838 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16856592..16857359 786..19 3840 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:05:14 has no hits.

BO07145.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:37 Download gff for BO07145.3prime
Subject Subject Range Query Range Percent Splice Strand
sina-PB 175..945 15..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:08 Download gff for BO07145.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9949-PB 175..945 15..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:37 Download gff for BO07145.3prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 1071..1841 15..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:10 Download gff for BO07145.3prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 1071..1841 15..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:10 Download gff for BO07145.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16856592..16857362 15..786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:37 Download gff for BO07145.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16849692..16850462 15..786 99   Minus

BO07145.5prime Sequence

786 bp (785 high quality bases) assembled on 2005-12-03

> BO07145.5prime
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCT

BO07145.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9949-PA 945 sina-RA 1..770 17..786 3850 100 Plus
CG9949-PB 945 sina-RB 1..770 17..786 3850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 3124 CG9949-RC 830..1599 17..786 3850 100 Plus
sina-RB 2482 CG9949-RB 188..957 17..786 3850 100 Plus
sina-RA 3191 CG9949-RA 897..1666 17..786 3850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16856418..16857187 17..786 3850 100 Plus
Blast to na_te.dros performed 2015-02-11 03:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 613..728 129..16 133 63 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 973..1033 49..106 126 72.1 Plus

BO07145.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:39 Download gff for BO07145.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-PB 1..770 17..786 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:09 Download gff for BO07145.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9949-PB 1..770 17..786 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:49 Download gff for BO07145.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 893..1666 12..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:48 Download gff for BO07145.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 893..1666 12..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:48 Download gff for BO07145.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16856414..16857187 12..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:49 Download gff for BO07145.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16849514..16850287 12..786 99   Plus

BO07145.complete Sequence

976 bp (976 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630686

> BO07145.complete
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAA
ACCGACGCCGGCTCACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGC
GTCGCTTCCGCAATTCACAACTCGGACTGCCTGGTGTTCGACACGTCGAT
TGCGCAATTGTTCGCCGACAATGGCAACCTGGGCATTAACGTGACCATAT
CTCTGGTCGCAAGCTTTCTAGACCAT

BO07145.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 945 CG9949-PC 1..942 17..958 4710 100 Plus
sina-RB 945 CG9949-PB 1..942 17..958 4710 100 Plus
sina-RA 945 CG9949-PA 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 3124 CG9949-RC 830..1771 17..958 4710 100 Plus
sina-RB 2482 CG9949-RB 188..1129 17..958 4710 100 Plus
sina-RA 3191 CG9949-RA 897..1838 17..958 4710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16856418..16857359 17..958 4710 100 Plus
Blast to na_te.dros performed 2014-11-27 17:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 613..728 129..16 133 63 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 973..1033 49..106 126 72.1 Plus

BO07145.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:09 Download gff for BO07145.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RB 1..945 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:38 Download gff for BO07145.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RB 184..1132 12..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:54 Download gff for BO07145.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RA 897..1838 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:10 Download gff for BO07145.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RB 184..1132 12..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:09 Download gff for BO07145.complete
Subject Subject Range Query Range Percent Splice Strand
sina-RA 897..1838 17..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:09 Download gff for BO07145.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16856418..16857359 17..960 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:54 Download gff for BO07145.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16849518..16850459 17..960 99   Plus

BO07145.pep Sequence

Translation from 16 to 976

> BO07145.pep
MSNKINPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSS
SSLSSAGGGDAGMSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSK
LTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHE
ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLAT
DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEA
ENFVYRLELNGNRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFA
DNGNLGINVTISLVASFLDH

BO07145.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
sina-PC 314 CG9949-PC 1..314 1..314 1667 100 Plus
sina-PB 314 CG9949-PB 1..314 1..314 1667 100 Plus
sina-PA 314 CG9949-PA 1..314 1..314 1667 100 Plus
sinah-PC 351 CG13030-PC 55..346 8..314 766 47.9 Plus
CG2681-PA 626 CG2681-PA 123..319 1..184 199 28.4 Plus