Clone Sequence Records
BO07145.3prime Sequence
786 bp (781 high quality bases) assembled on 2005-12-04
> BO07145.3prime
ATGGTCTAGAAAGCTTGCGACCAGAGATATGGTCACGTTAATGCCCAGGT
TGCCATTGTCGGCGAACAATTGCGCAATCGACGTGTCGAACACCAGGCAG
TCCGAGTTGTGAATTGCGGAAGCGACGCCCTCGTGGATCGAACGCGGCAT
TGCCTCCCAGGTGAGCCGGCGTCGGTTTCCGTTCAACTCCAGGCGATAGA
CAAAGTTCTCCGCTTCCTTGCGCGACCCGATCAGCTGAACGATGGCAAAG
AACTGCTGGTGTCCGTCGTACTTCTCCTGCTTCTCCAGCACGAGCATAAA
ATGGTGGCCGAAGCAGGACTGCATCATTACCCAATCGACGGCGCCGGGCA
GGTTGATGTCGGTGGCCAGGAACACGATGTCCTCGCCCTGCAGCGTTGTG
ATGCTCTTGTGCGACATCATCAGATGCTGCATGACTAGGTCAAGCGGGCC
CTGCCACTTACAGCTGGCGCCCGGGCACGGACACAGGTAGGGCCGGCACT
CGCACGTCTCCTCGTGTTCTGTCTTTTCCGTGTAAACCAGCGAGGCGGTG
CATCCGTAGCCGGAGTGCTTGCACGGGAACTTGACGTTCGAGGCAACCTT
CTCCATCGCCAGGTTGCGGATATTCGCCAGCGGACCGCGGCAGGTGGGGC
AGCAGGTGAGCTTGGAGCGACAGGACACGCACACCAGGTGCCCGCTGGAG
CACTGCAGGATCGGCGGTAGCACATAGTCAAAGCACACGGGGCATTCAAA
CAGCGAGGTCAAGTCGGCGGACATGCCCGCATCACC
BO07145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9949-PA | 945 | sina-RA | 175..942 | 786..19 | 3840 | 100 | Minus |
CG9949-PB | 945 | sina-RB | 175..942 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 3124 | CG9949-RC | 1004..1771 | 786..19 | 3840 | 100 | Minus |
sina-RB | 2482 | CG9949-RB | 362..1129 | 786..19 | 3840 | 100 | Minus |
sina-RA | 3191 | CG9949-RA | 1071..1838 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16856592..16857359 | 786..19 | 3840 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:05:14 has no hits.
BO07145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:37 Download gff for
BO07145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-PB | 175..945 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:08 Download gff for
BO07145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9949-PB | 175..945 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:37 Download gff for
BO07145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 1071..1841 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:10 Download gff for
BO07145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 1071..1841 | 15..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:10 Download gff for
BO07145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16856592..16857362 | 15..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:37 Download gff for
BO07145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16849692..16850462 | 15..786 | 99 | | Minus |
BO07145.5prime Sequence
786 bp (785 high quality bases) assembled on 2005-12-03
> BO07145.5prime
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCT
BO07145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9949-PA | 945 | sina-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
CG9949-PB | 945 | sina-RB | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 3124 | CG9949-RC | 830..1599 | 17..786 | 3850 | 100 | Plus |
sina-RB | 2482 | CG9949-RB | 188..957 | 17..786 | 3850 | 100 | Plus |
sina-RA | 3191 | CG9949-RA | 897..1666 | 17..786 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16856418..16857187 | 17..786 | 3850 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 03:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 129..16 | 133 | 63 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 49..106 | 126 | 72.1 | Plus |
BO07145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:39 Download gff for
BO07145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-PB | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:09 Download gff for
BO07145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9949-PB | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:54:49 Download gff for
BO07145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 893..1666 | 12..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:48 Download gff for
BO07145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 893..1666 | 12..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:48 Download gff for
BO07145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16856414..16857187 | 12..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:54:49 Download gff for
BO07145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16849514..16850287 | 12..786 | 99 | | Plus |
BO07145.complete Sequence
976 bp (976 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630686
> BO07145.complete
GAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAAC
CGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACG
AGCACCTCGACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACAC
ATCCTCGTCGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGG
GCATGTCCGCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGAC
TATGTGCTACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGT
GTCCTGTCGCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGG
CGAATATCCGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTC
CCGTGCAAGCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGA
AAAGACAGAACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGT
GCCCGGGCGCCAGCTGTAAGTGGCAGGGCCCGCTTGACCTAGTCATGCAG
CATCTGATGATGTCGCACAAGAGCATCACAACGCTGCAGGGCGAGGACAT
CGTGTTCCTGGCCACCGACATCAACCTGCCCGGCGCCGTCGATTGGGTAA
TGATGCAGTCCTGCTTCGGCCACCATTTTATGCTCGTGCTGGAGAAGCAG
GAGAAGTACGACGGACACCAGCAGTTCTTTGCCATCGTTCAGCTGATCGG
GTCGCGCAAGGAAGCGGAGAACTTTGTCTATCGCCTGGAGTTGAACGGAA
ACCGACGCCGGCTCACCTGGGAGGCAATGCCGCGTTCGATCCACGAGGGC
GTCGCTTCCGCAATTCACAACTCGGACTGCCTGGTGTTCGACACGTCGAT
TGCGCAATTGTTCGCCGACAATGGCAACCTGGGCATTAACGTGACCATAT
CTCTGGTCGCAAGCTTTCTAGACCAT
BO07145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 945 | CG9949-PC | 1..942 | 17..958 | 4710 | 100 | Plus |
sina-RB | 945 | CG9949-PB | 1..942 | 17..958 | 4710 | 100 | Plus |
sina-RA | 945 | CG9949-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 3124 | CG9949-RC | 830..1771 | 17..958 | 4710 | 100 | Plus |
sina-RB | 2482 | CG9949-RB | 188..1129 | 17..958 | 4710 | 100 | Plus |
sina-RA | 3191 | CG9949-RA | 897..1838 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16856418..16857359 | 17..958 | 4710 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 17:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 129..16 | 133 | 63 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 49..106 | 126 | 72.1 | Plus |
BO07145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:09 Download gff for
BO07145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RB | 1..945 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:38 Download gff for
BO07145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RB | 184..1132 | 12..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:54 Download gff for
BO07145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 897..1838 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:10 Download gff for
BO07145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RB | 184..1132 | 12..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:09 Download gff for
BO07145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 897..1838 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:09 Download gff for
BO07145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16856418..16857359 | 17..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:54 Download gff for
BO07145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16849518..16850459 | 17..960 | 99 | | Plus |
BO07145.pep Sequence
Translation from 16 to 976
> BO07145.pep
MSNKINPKRREPTAAAAGAGATGVATNTSTSTGSSSAGNTSSANTSSSSS
SSLSSAGGGDAGMSADLTSLFECPVCFDYVLPPILQCSSGHLVCVSCRSK
LTCCPTCRGPLANIRNLAMEKVASNVKFPCKHSGYGCTASLVYTEKTEHE
ETCECRPYLCPCPGASCKWQGPLDLVMQHLMMSHKSITTLQGEDIVFLAT
DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEA
ENFVYRLELNGNRRRLTWEAMPRSIHEGVASAIHNSDCLVFDTSIAQLFA
DNGNLGINVTISLVASFLDH
BO07145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-PC | 314 | CG9949-PC | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PB | 314 | CG9949-PB | 1..314 | 1..314 | 1667 | 100 | Plus |
sina-PA | 314 | CG9949-PA | 1..314 | 1..314 | 1667 | 100 | Plus |
sinah-PC | 351 | CG13030-PC | 55..346 | 8..314 | 766 | 47.9 | Plus |
CG2681-PA | 626 | CG2681-PA | 123..319 | 1..184 | 199 | 28.4 | Plus |