Clone BO07147 Report

Search the DGRC for BO07147

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10970-RA
Protein status:BO07147.pep: validated full length
Sequenced Size:343

Clone Sequence Records

BO07147.3prime Sequence

341 bp (340 high quality bases) assembled on 2005-12-04

> BO07147.3prime
ATGGTCTAGAAAGCTTGCCTTTAGGTTCACCTTGATTTCGAAGGTCTTGT
AGGTGTATTCCTGGATGACTTTCAGATTCTTAATAATGAACTCCTTGATG
GCCTGCACGTAATCGGCGGCGGCCAGGATGAGCTTCTTAAAGGCATCGAT
CACCTTGCCCTCGCCCTCCAGACGACCCTTGAACTTCTCCTCCGACACCT
GGGCAATGAATCCCCGCAGTCCCAGTGCATTGGCCTGGACCAGTGCAAAC
AGCTCGAAAGCATCCTTGGGCACCCTGCCACGCACCTCAAAGTCACAGCA
CAAGATCTCCTCCTTTTGGCCTGCCATGTCGACTGATAACT

BO07147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-PA 312 CG10970-RA 1..309 327..19 1545 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 1810 CG10970-RB 1339..1652 332..19 1555 99.7 Minus
CG10970-RA 589 CG10970-RA 121..434 332..19 1555 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9069757..9070070 19..332 1555 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 14:56:42 has no hits.

BO07147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:40 Download gff for BO07147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 16..327 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:10 Download gff for BO07147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 16..327 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:41 Download gff for BO07147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 22..339 19..339 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:00 Download gff for BO07147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 117..434 19..339 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:00 Download gff for BO07147.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9069757..9070074 19..339 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:41 Download gff for BO07147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8963790..8964107 19..339 98   Plus

BO07147.5prime Sequence

341 bp (340 high quality bases) assembled on 2005-12-04

> BO07147.5prime
GAAGTTATCAGTCGACATGGCAGGCCAAAAGGAGGAGATCTTGTGCTGTG
ACTTTGAGGTGCGTGGCAGGGTGCCCAAGGATGCTTTCGAGCTGTTTGCA
CTGGTCCAGGCCAATGCACTGGGACTGCGGGGATTCATTGCCCAGGTGTC
GGAGGAGAAGTTCAAGGGTCGTCTGGAGGGCGAGGGCAAGGTGATCGATG
CCTTTAAGAAGCTCATCCTGGCCGCCGCCGATTACGTGCAGGCCATCAAG
GAGTTCATTATTAAGAATCTGAAAGTCATCCAGGAATACACCTACAAGAC
CTTCGAAATCAAGGTGAACCTAAAGGCAAGCTTTCTAGACC

BO07147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-PA 312 CG10970-RA 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 1810 CG10970-RB 1339..1652 12..325 1555 99.7 Plus
CG10970-RA 589 CG10970-RA 121..434 12..325 1555 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9069757..9070070 325..12 1555 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 05:09:59 has no hits.

BO07147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:40 Download gff for BO07147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 17..328 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:11 Download gff for BO07147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-PA 1..312 17..328 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:21:16 Download gff for BO07147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 22..339 5..325 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:05 Download gff for BO07147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 117..434 5..325 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:05 Download gff for BO07147.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9069757..9070074 5..325 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:21:16 Download gff for BO07147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8963790..8964107 5..325 98   Minus

BO07147.complete Sequence

343 bp (343 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630687

> BO07147.complete
GAAGTTATCAGTCGACATGGCAGGCCAAAAGGAGGAGATCTTGTGCTGTG
ACTTTGAGGTGCGTGGCAGGGTGCCCAAGGATGCTTTCGAGCTGTTTGCA
CTGGTCCAGGCCAATGCACTGGGACTGCGGGGATTCATTGCCCAGGTGTC
GGAGGAGAAGTTCAAGGGTCGTCTGGAGGGCGAGGGCAAGGTGATCGATG
CCTTTAAGAAGCTCATCCTGGCCGCCGCCGATTACGTGCAGGCCATCAAG
GAGTTCATTATTAAGAATCTGAAAGTCATCCAGGAATACACCTACAAGAC
CTTCGAAATCAAGGTGAACCTAAAGGCAAGCTTTCTAGACCAT

BO07147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 312 CG10970-PB 1..309 17..325 1545 100 Plus
CG10970-RA 312 CG10970-PA 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-RB 1810 CG10970-RB 1339..1652 12..325 1555 99.7 Plus
CG10970-RA 589 CG10970-RA 121..434 12..325 1555 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9069757..9070070 325..12 1555 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 16:20:28 has no hits.

BO07147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:10 Download gff for BO07147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 1..312 17..328 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:04 Download gff for BO07147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 1335..1652 5..325 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:04 Download gff for BO07147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 31..339 17..327 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:11 Download gff for BO07147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 1335..1652 5..325 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:19 Download gff for BO07147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10970-RA 126..434 17..327 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:19 Download gff for BO07147.complete
Subject Subject Range Query Range Percent Splice Strand
X 9069754..9070065 17..327 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:04 Download gff for BO07147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8963787..8964098 17..327 99   Minus

BO07147.pep Sequence

Translation from 16 to 343

> BO07147.pep
MAGQKEEILCCDFEVRGRVPKDAFELFALVQANALGLRGFIAQVSEEKFK
GRLEGEGKVIDAFKKLILAAADYVQAIKEFIIKNLKVIQEYTYKTFEIKV
NLKASFLDH

BO07147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10970-PB 103 CG10970-PB 1..103 1..103 514 100 Plus
CG10970-PA 103 CG10970-PA 1..103 1..103 514 100 Plus