Clone Sequence Records
BO07153.3prime Sequence
868 bp (807 high quality bases) assembled on 2005-12-04
> BO07153.3prime
ATGGTCTAGAAAGCTTGCATGAACACCGGATGTCCCCTCTACTTCAGCCA
CCTCAGCCACCTGATCTTCCGATTCAATTTGGCTGGCCTCGCACACACAT
TGGGCCTTGACTTTGTCGTTATCGCTATCACCCAGTGGCGTGGATGGGGG
GCAGGAGGTGGTCGAGGGATGGCAGGCGGCAGGTGCCTGCATCAGAGCGA
GATCAAAGTGCGGCTGATCGCAGAGCGTGAGACTCTGGCTGAGATGGCGG
GCGATCACTTGGACCATGTGCCTGGCCAGCGGCGGAGCGAACATAACCCG
ACGAAGGAGCGACCAAGTGGAGCCCATGAGTGAGCTGCCATAGTGATTGT
GCTCCTCTGGTGGCCTATTCTCCAGACGTTTCTCTGCGATCGGTGTCAGA
TTCTCAACGCTGCTGTTGGTGCTTTCTTGGTGGTTCTTCTCCTGATTTCT
GATCTCCATTTCTAAACTCCTTCCGTTCCTGATCTTTTCCTGCTGGTTTT
TCTTGGTCCTCTGCAGAGTTTGTCTTTGAGTCCTCTGTTTTCGATTCCTT
CGCTTCTTGTGCTGCACATTGTTTGTAGTCATGCGATTTGTGTGCACCTT
CTCAAGATCCCTTGGGGTCTCCCGCAGCTCCTTCTCCCTCTCCATCTGCT
GATGGATCCAACTGATCATGCCCTTCTCCTGGATCTTGAAACCCTCATTG
AGTAGGCTATTCCTGCGCAGAAATTGGAGCGTATCATCGTAGCCCTGCTG
ACAGAAATTGGCCATGAAATCCGCCCTGCCCGGCACCAAGATGCGCACCA
TGCGACGCAGATTCCGCCTGGACAATCGGATGCAAGTGTTCGCCCAATTG
ATGTTCAGCTGAAGCAGA
BO07153.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5560-PA | 1443 | CG5560-RA | 591..1440 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dob-RA | 1855 | CG5560-RA | 777..1626 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15068013..15068862 | 868..19 | 4250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:09:58 has no hits.
BO07153.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:49 Download gff for
BO07153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5560-PA | 592..1443 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:23 Download gff for
BO07153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5560-PA | 592..1443 | 18..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:22 Download gff for
BO07153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 778..1631 | 13..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:20 Download gff for
BO07153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 778..1631 | 13..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:20 Download gff for
BO07153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15068014..15068867 | 13..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:22 Download gff for
BO07153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14962047..14962900 | 13..867 | 99 | | Minus |
BO07153.5prime Sequence
879 bp (823 high quality bases) assembled on 2005-12-04
> BO07153.5prime
GAAGTTATCAGTCGACATGAAGATCCGAACCAGGAGGAGTCTTTCCTTTT
CCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGTGGCCGTCTGCCTA
CGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTGCCGGTGCATCCGC
CGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTTCCGCTGGAATGCA
TGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACAACGGCATTCGTTG
GGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCCTTCTCGAGGGCAT
GCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCCAGCGGACGACTTC
ATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGTGGTAATGTCGGAG
TTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGTGCTCCTGCTTCAT
TCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGAGGAGTTCGCTATA
TGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGACGAGCACACCGTC
ACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCCCACGGGATCAGAA
CCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGAT
TGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTTGGTGCCGGGCAGG
GCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACGATGATACGCTCCA
ATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTCAAGATCCAGGAGA
AGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAGGGAGAAAGAGCTG
CGGGAGACCCCAGGGATCTTGAGAANGTG
BO07153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5560-PA | 1443 | CG5560-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dob-RA | 1855 | CG5560-RA | 187..1050 | 17..879 | 4269 | 99.7 | Plus |
| bmm-RB | 2301 | CG5295-RB | 641..899 | 341..599 | 305 | 75.5 | Plus |
| bmm-RA | 2437 | CG5295-RA | 641..899 | 341..599 | 305 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15067193..15067659 | 17..483 | 2335 | 100 | Plus |
| X | 23542271 | X | 15067885..15068286 | 479..879 | 1934 | 99.3 | Plus |
| 3L | 28110227 | 3L | 14778618..14778876 | 599..341 | 290 | 74.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:39:30 has no hits.
BO07153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:50 Download gff for
BO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5560-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:24 Download gff for
BO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5560-PA | 1..864 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:30 Download gff for
BO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 187..1050 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:41 Download gff for
BO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 187..1050 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:41 Download gff for
BO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15067193..15067657 | 17..481 | 100 | -> | Plus |
| X | 15067888..15068286 | 482..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:30 Download gff for
BO07153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14961226..14961690 | 17..481 | 100 | -> | Plus |
| arm_X | 14961921..14962319 | 482..879 | 99 | | Plus |
BO07153.complete Sequence
1474 bp (1474 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630690
> BO07153.complete
GAAGTTATCAGTCGACATGAAGATCCGAACCAGGAGGAGTCTTTCCTTTT
CCGGCTGTGGCTTCTTGGGCATCTATCACGTGGGCGTGGCCGTCTGCCTA
CGCCAACACGCCCCCCAACTTTTGCTGGAGAGGATTGCCGGTGCATCCGC
CGGTGCCTTGGCCGCCTGCTGTCTCATCTGTGATCTTCCGCTGGAATGCA
TGGCCGGGGATTTCCTGCGAGTTGTCCAGGAGATACAACGGCATTCGTTG
GGCGCCTTCAGTCCGTGGTTCAATTTGCCGGAGTGCCTTCTCGAGGGCAT
GCGAAGTTGGTTGCCCGAGGACGCCCATCTACTGGCCAGCGGACGACTTC
ATATTTCCCTTACCCGCGTCAGCGATCGCCGCAATGTGGTAATGTCGGAG
TTCAGCTCCCGGCAGGAGCTACTCCAGGCCCTCATGTGCTCCTGCTTCAT
TCCCGGACTGTCTGGATTGGTGCCTCCACAGGTCCGAGGAGTTCGCTATA
TGGATGGGGCCTTTTCCGATAATCTACCGCTGCTGGACGAGCACACCGTC
ACCGTAAGTCCATTCTGCGGGGAGAGCGACATATGCCCACGGGATCAGAA
CCCCCATCTGCTTCAGCTGAACATCAATTGGGCGAACACTTGCATCCGAT
TGTCCAGGCGGAATCTGCGTCGCATGGTGCGCATCTTGGTGCCGGGCAGG
GCGGATTTCATGGCCAATTTCTGTCAGCAGGGCTACGATGATACGCTCCA
ATTTCTGCGCAGGAATAGCCTACTCAATGAGGGTTTCAAGATCCAGGAGA
AGGGCATGATCAGTTGGATCCATCAGCAGATGGAGAGGGAGAAGGAGCTG
CGGGAGACCCCAAGGGATCTTGAGAAGGTGCACACAAATCGCATGACTAC
AAACAATGTGCAGCACAAGAAGCGAAGGAATCGAAAACAGAGGACTCAAA
GACAAACTCTGCAGAGGACCAAGAAAAACCAGCAGGAAAAGATCAGGAAC
GGAAGGAGTTTAGAAATGGAGATCAGAAATCAGGAGAAGAACCACCAAGA
AAGCACCAACAGCAGCGTTGAGAATCTGACACCGATCGCAGAGAAACGTC
TGGAGAATAGGCCACCAGAGGAGCACAATCACTATGGCAGCTCACTCATG
GGCTCCACTTGGTCGCTCCTTCGTCGGGTTATGTTCGCTCCGCCGCTGGC
CAGGCACATGGTCCAAGTGATCGCCCGCCATCTCAGCCAGAGTCTCACGC
TCTGCGATCAGCCGCACTTTGATCTCGCTCTGATGCAGGCACCTGCCGCC
TGCCATCCCTCGACCACCTCCTGCCCCCCATCCACGCCACTGGGTGATAG
CGATAACGACAAAGTCAAGGCCCAATGTGTGTGCGAGGCCAGCCAAATTG
AATCGGAAGATCAGGTGGCTGAGGTGGCTGAAGTAGAGGGGACATCCGGT
GTTCATGCAAGCTTTCTAGACCAT
BO07153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dob-RA | 1443 | CG5560-PA | 1..1440 | 17..1456 | 7200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dob-RA | 1855 | CG5560-RA | 187..1626 | 17..1456 | 7200 | 100 | Plus |
| bmm-RB | 2301 | CG5295-RB | 641..899 | 341..599 | 290 | 74.1 | Plus |
| bmm-RA | 2437 | CG5295-RA | 641..899 | 341..599 | 290 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15067885..15068862 | 479..1456 | 4890 | 100 | Plus |
| X | 23542271 | X | 15067193..15067659 | 17..483 | 2335 | 100 | Plus |
| 3L | 28110227 | 3L | 14778618..14778876 | 599..341 | 290 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:46 has no hits.
BO07153.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:56 Download gff for
BO07153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 1..1443 | 17..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:24 Download gff for
BO07153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 191..1635 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:20 Download gff for
BO07153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 187..1626 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:56 Download gff for
BO07153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 191..1635 | 17..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:48 Download gff for
BO07153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dob-RA | 187..1626 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:48 Download gff for
BO07153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15067193..15067657 | 17..481 | 100 | -> | Plus |
| X | 15067888..15068862 | 482..1458 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:20 Download gff for
BO07153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14961226..14961690 | 17..481 | 100 | -> | Plus |
| arm_X | 14961921..14962895 | 482..1458 | 99 | | Plus |
BO07153.pep Sequence
Translation from 16 to 1474
> BO07153.pep
MKIRTRRSLSFSGCGFLGIYHVGVAVCLRQHAPQLLLERIAGASAGALAA
CCLICDLPLECMAGDFLRVVQEIQRHSLGAFSPWFNLPECLLEGMRSWLP
EDAHLLASGRLHISLTRVSDRRNVVMSEFSSRQELLQALMCSCFIPGLSG
LVPPQVRGVRYMDGAFSDNLPLLDEHTVTVSPFCGESDICPRDQNPHLLQ
LNINWANTCIRLSRRNLRRMVRILVPGRADFMANFCQQGYDDTLQFLRRN
SLLNEGFKIQEKGMISWIHQQMEREKELRETPRDLEKVHTNRMTTNNVQH
KKRRNRKQRTQRQTLQRTKKNQQEKIRNGRSLEMEIRNQEKNHQESTNSS
VENLTPIAEKRLENRPPEEHNHYGSSLMGSTWSLLRRVMFAPPLARHMVQ
VIARHLSQSLTLCDQPHFDLALMQAPAACHPSTTSCPPSTPLGDSDNDKV
KAQCVCEASQIESEDQVAEVAEVEGTSGVHASFLDH
BO07153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dob-PA | 480 | CG5560-PA | 1..480 | 1..480 | 2530 | 100 | Plus |
| bmm-PA | 507 | CG5295-PA | 2..288 | 8..293 | 937 | 61.2 | Plus |
| bmm-PB | 553 | CG5295-PB | 2..288 | 8..293 | 937 | 61.2 | Plus |
