Clone Sequence Records
BO07155.3prime Sequence
861 bp (808 high quality bases) assembled on 2005-12-04
> BO07155.3prime
ATGGTCTAGAAAGCTTGCATTAATTTTATACCATTCCAAATCGTCAGGTT
TGTGGGAAGACGGCGGATTTACAATGGCCTGTGCGTCATTGAACAAGTTA
CTGCAAAGATTATCCTCAATCTGGAGGGAAGACACTAAGTTATCTGGGCA
GTCGAGCACGCTAAGCCCAGATTCATTCTGCTTTATTCGCTCGGCCATCA
AGATTTGCTGCTGCTGGCGATATTGGATTCTGGGATCCTCCCACTGCGTA
GATTTTGTAGTATGATTCAAGTAGTAGATCTGGCCATCATTGGTCTTGGC
TTGCTCCCATCCCGGCGGCAAGGCGCCTAGTTGGCGGTTCAACTGAATGG
GGCTGATGACGTCGTAGGAGCGCTGCTTCTTGTGCACTGTCTGCATGGAC
ATGGGAATGTCCTGCGACATGCAGGTGTTCATGGCGTCCAGATCAATGGC
CGAGCTGGCCGGGGCGCCGCTGGGGAACTCTTGGGCACTGTTCTCTGGGA
AAGTGGGCCCAGCGGGCTGCTGTTGGCTGCTCGGATTGGCATTCGGATTG
TTGGCTGCTGCTGCGTCGCTCCGGGCGCGCACATTGTAGTTCTGCTGCAG
CGAGGCGGGGCTGCTGCGGGCTCGGGAGTGATGTATCGCCAGGCGGCTGT
GCTGGGGAGACGGCTGAATCTGGAGCTGGGGGATGGCGGCGATGGGCGAC
TGGCCATCTGGCTGCTGGACGATGGACGCCTTGTTCCCGATGTTGATGCT
CGACTGGGAGCCCGCGTCGTAGGTGGAGTCGGCGCTGTTGGGCCGCGAGT
GCGAGGGCGCCGGGGGCGTGAAGAAGGAGTTGGGCAGCTTCCGCATGCGC
AGGGGCAGCTG
BO07155.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4005-PB | 1101 | CG4005-RB | 256..1098 | 861..19 | 4190 | 99.8 | Minus |
| CG4005-PA | 1101 | CG4005-RA | 256..1098 | 861..19 | 4190 | 99.8 | Minus |
| CG4005-PC | 1257 | CG4005-RC | 256..944 | 861..173 | 3420 | 99.8 | Minus |
| CG4005-PC | 1257 | CG4005-RC | 1100..1254 | 173..19 | 775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1369 | CG4005-RD | 426..1268 | 861..19 | 4200 | 99.9 | Minus |
| yki-RF | 1525 | CG4005-RF | 426..1114 | 861..173 | 3430 | 99.9 | Minus |
| yki-RG | 1460 | CG4005-RG | 361..1049 | 861..173 | 3430 | 99.9 | Minus |
| yki-RF | 1525 | CG4005-RF | 1262..1424 | 180..19 | 790 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068060 | 266..861 | 2965 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24066076..24066180 | 19..123 | 525 | 100 | Plus |
| 2R | 25286936 | 2R | 24067163..24067254 | 174..265 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 24066261..24066314 | 121..174 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:18:06 has no hits.
BO07155.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:53 Download gff for
BO07155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PA | 256..1101 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:29 Download gff for
BO07155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PA | 256..1101 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:12 Download gff for
BO07155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 426..1273 | 11..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:00 Download gff for
BO07155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 426..1273 | 11..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:00 Download gff for
BO07155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24066071..24066177 | 11..120 | 96 | <- | Plus |
| 2R | 24066261..24066313 | 121..173 | 100 | <- | Plus |
| 2R | 24067163..24067254 | 174..265 | 100 | <- | Plus |
| 2R | 24067465..24068060 | 266..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:12 Download gff for
BO07155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19953594..19953700 | 11..120 | 96 | <- | Plus |
| arm_2R | 19953784..19953836 | 121..173 | 100 | <- | Plus |
| arm_2R | 19954686..19954777 | 174..265 | 100 | <- | Plus |
| arm_2R | 19954988..19955583 | 266..861 | 99 | | Plus |
BO07155.5prime Sequence
902 bp (796 high quality bases) assembled on 2005-12-03
> BO07155.5prime
GAAGTTATCAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTAT
GTAGTTTTCGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATG
TCAGCCAGCAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGA
GGACATGCTTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACC
AGGACACGGACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCG
GGTGACGCCAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCC
CAACTCCTTCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCG
CCGACTCCACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAAC
AAGGCGTCCATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCAT
CCCCCAGCTCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATAC
ATCACTCCCGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAAT
GTGCGCGCCCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCC
GAGCAGCCAACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCC
AAGAGTTCCCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCC
ATGAACACCTGCATGTCGCAGGACATTCCCATGTCCATGCAGACAGTGCA
CAAGAAGCAGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCC
AACTAGGCGCCTTGGCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGG
CAGATCTACTACTTGAATCATACTACAAAATCTACGCAGTGGGAGGATCC
CA
BO07155.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4005-PB | 1101 | CG4005-RB | 1..886 | 17..902 | 4380 | 99.7 | Plus |
| CG4005-PA | 1101 | CG4005-RA | 1..886 | 17..902 | 4380 | 99.7 | Plus |
| CG4005-PC | 1257 | CG4005-RC | 1..886 | 17..902 | 4380 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RF | 1525 | CG4005-RF | 171..1056 | 17..902 | 4400 | 99.8 | Plus |
| yki-RD | 1369 | CG4005-RD | 171..1056 | 17..902 | 4400 | 99.8 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..991 | 17..902 | 4400 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 867..17 | 4225 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:10:04 has no hits.
BO07155.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:10:54 Download gff for
BO07155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PA | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:30 Download gff for
BO07155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PC | 1..885 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:23 Download gff for
BO07155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..990 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:43 Download gff for
BO07155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..990 | 9..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:43 Download gff for
BO07155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24067221..24067254 | 868..901 | 100 | <- | Minus |
| 2R | 24067465..24068320 | 9..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:23 Download gff for
BO07155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19954744..19954777 | 868..901 | 100 | <- | Minus |
| arm_2R | 19954988..19955843 | 9..867 | 99 | | Minus |
BO07155.complete Sequence
1132 bp (1132 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630691
> BO07155.complete
GAAGTTATCAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTAT
GTAGTTTTCGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATG
TCAGCCAGCAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGA
GGACATGCTTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACC
AGGACACGGACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCG
GGTGACGCCAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCC
CAACTCCTTCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCG
CCGACTCCACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAAC
AAGGCGTCCATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCAT
CCCCCAGCTCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATAC
ATCACTCCCGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAAT
GTGCGCGCCCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCC
GAGCAGCCAACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCC
AAGAGTTCCCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCC
ATGAACACCTGCATGTCGCAGGACATTCCCATGTCCATGCAGACAGTGCA
CAAGAAGCAGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCC
AACTAGGCGCCTTGCCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGC
CAGATCTACTACTTGAATCATACTACAAAATCTACGCAGTGGGAGGATCC
CAGAATCCAATATCGCCAGCAGCAGCAAATCTTGATGGCCGAGCGAATAA
AGCAGAATGAATCTGGGCTTAGCGTGCTCGACTGCCCAGATAACTTAGTG
TCTTCCCTCCAGATTGAGGATAATCTTTGCAGTAACTTGTTCAATGACGC
ACAGGCCATTGTAAATCCGCCGTCTTCCCACAAACCTGACGATTTGGAAT
GGTATAAAATTAATGCAAGCTTTCTAGACCAT
BO07155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1032 | CG4005-PD | 1..1029 | 86..1114 | 5145 | 100 | Plus |
| yki-RF | 1188 | CG4005-PF | 1..875 | 86..960 | 4375 | 100 | Plus |
| yki-RG | 1188 | CG4005-PG | 1..875 | 86..960 | 4375 | 100 | Plus |
| yki-RF | 1188 | CG4005-PF | 1031..1185 | 960..1114 | 775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1369 | CG4005-RD | 171..1268 | 17..1114 | 5490 | 100 | Plus |
| yki-RF | 1525 | CG4005-RF | 171..1114 | 17..960 | 4720 | 100 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1049 | 17..960 | 4720 | 100 | Plus |
| yki-RF | 1525 | CG4005-RF | 1270..1424 | 960..1114 | 775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 867..17 | 4255 | 100 | Minus |
| 2R | 25286936 | 2R | 24066076..24066180 | 1114..1010 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 24067163..24067254 | 959..868 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 24066261..24066314 | 1012..959 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:53:52 has no hits.
BO07155.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:58 Download gff for
BO07155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 1..1032 | 86..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:08 Download gff for
BO07155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1273 | 9..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:46 Download gff for
BO07155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 171..1268 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:58 Download gff for
BO07155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1273 | 9..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:04 Download gff for
BO07155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 171..1268 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:04 Download gff for
BO07155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24066074..24066177 | 1013..1116 | 98 | <- | Minus |
| 2R | 24066261..24066313 | 960..1012 | 100 | <- | Minus |
| 2R | 24067163..24067254 | 868..959 | 100 | <- | Minus |
| 2R | 24067465..24068315 | 17..867 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:46 Download gff for
BO07155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19953597..19953700 | 1013..1116 | 98 | <- | Minus |
| arm_2R | 19953784..19953836 | 960..1012 | 100 | <- | Minus |
| arm_2R | 19954686..19954777 | 868..959 | 100 | <- | Minus |
| arm_2R | 19954988..19955838 | 17..867 | 100 | | Minus |
BO07155.pep Sequence
Translation from 16 to 1132
> BO07155.pep
MCACLIAKIILCSFRLYTISAFYMLTTMSASSNTNSLIEKEIDDEDMLSP
IKSNNLVVRVNQDTDDNLQALFDSVLNPGDAKRPLQLPLRMRKLPNSFFT
PPAPSHSRANSADSTYDAGSQSSINIGNKASIVQQPDGQSPIAAIPQLQI
QPSPQHSRLAIHHSRARSSPASLQQNYNVRARSDAAAANNPNANPSSQQQ
PAGPTFPENSAQEFPSGAPASSAIDLDAMNTCMSQDIPMSMQTVHKKQRS
YDVISPIQLNRQLGALPPGWEQAKTNDGQIYYLNHTTKSTQWEDPRIQYR
QQQQILMAERIKQNESGLSVLDCPDNLVSSLQIEDNLCSNLFNDAQAIVN
PPSSHKPDDLEWYKINASFLDH
BO07155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-PD | 343 | CG4005-PD | 1..343 | 24..366 | 1778 | 100 | Plus |
| yki-PF | 395 | CG4005-PF | 1..395 | 24..366 | 1712 | 86.6 | Plus |
| yki-PG | 395 | CG4005-PG | 1..395 | 24..366 | 1712 | 86.6 | Plus |
