Clone Sequence Records
BO07161.3prime Sequence
819 bp (803 high quality bases) assembled on 2005-12-04
> BO07161.3prime
ATGGTCTAGAAAGCTTGCGTTGGTCAGACGATACTTAATGGCCCTCAGGA
TGGGGTACTTCTCGTTGGTGCAGAGTCCTCGGAAATCATCGTAGGACAGG
TCGAATAGCGCGACTCCACCCAGATTTTCAGTGCGCACATAGCCGGCCTT
ATCGGCGGCAGTATCGGGATCCTCGAAGCTCACCCAGATGCCATTGTCGC
CCTTTTTATCGGCTGCCCTGTAGGCATAAGAGCCGAAACGCTTGGCAGGA
TCCTGAACCTTGATCAGCGGAGCATTGGCGCCCTTCAAATAGGCGTTGTT
CTGGTTGGGCAGCAGGGCGCAGACCTCCGGCCAGCTGTAAATGCCAGGCA
CCTGAGTGTTACCACCCACTGGAGCCTCGTCCTTGACGTCCTTCACCGGC
GGAACACCAGTGTCGCCAGAGTCATCGGTCAGTTTCCATGGGCGACCGTA
GGTGGCCACGCCCACATTGATCTTGCTGGCGGGACAGTTGTTGCGCAACC
AGTACTTCACCTGAGCAGCCACATTGAACTCGGGATTGCGTTCGCTCAGT
TCATAAATGGGTGCGGCATAGTCGGCAACTTCGGGATTACGCTGGGGTGT
AAAGAAATCGAAGGTACCCAGATTCACAAAGTCTAAATAGTTGACCACAG
CGGGAATGTCGTAGAACAGGGATGAGTTCACATTGGGCAGAACAGTGGTG
GAGAGCAGCAGGTTGTCCGGACGGAAGGCGTTCTTAACATCACGGAGTAG
AGCGGTGAACTGCTCCTTGTGCTCCTCGGACTTCTCATCGACGATCGAGT
CGCCGGAGAAGACCTTCTT
BO07161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-PA | 1359 | Chit-RA | 556..1356 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-RB | 1811 | CG5210-RB | 895..1695 | 819..19 | 4005 | 100 | Minus |
| CG5210-RA | 1541 | CG5210-RA | 625..1425 | 819..19 | 4005 | 100 | Minus |
| Idgf4-RC | 1807 | CG1780-RC | 597..892 | 794..499 | 300 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16692986..16693635 | 668..19 | 3250 | 100 | Minus |
| 2R | 25286936 | 2R | 16692773..16692923 | 819..669 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 16450288..16450454 | 192..26 | 220 | 75.4 | Minus |
| X | 23542271 | X | 9929222..9929297 | 719..794 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:10:17 has no hits.
BO07161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:04 Download gff for
BO07161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chit-PA | 556..1359 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:42 Download gff for
BO07161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-PA | 556..1359 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:26 Download gff for
BO07161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 625..1430 | 14..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:24 Download gff for
BO07161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 625..1430 | 14..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:24 Download gff for
BO07161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16692773..16692923 | 669..819 | 100 | -> | Minus |
| 2R | 16692986..16693640 | 14..668 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:26 Download gff for
BO07161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12580278..12580428 | 669..819 | 100 | -> | Minus |
| arm_2R | 12580491..12581145 | 14..668 | 99 | | Minus |
BO07161.5prime Sequence
805 bp (779 high quality bases) assembled on 2005-12-03
> BO07161.5prime
GAAGTTATCAGTCGACATGATCATTAAAGCCCTAGCGATCGTTTCGCTGT
GCCTGGCCAGCATTCAGGCCTCCAAGGTGGGAGCTCCGCAGTTGCCCAAG
AAGCACCTGGTCTGCTACTACGATTCCGCCAGTTTCGTCAAGGAAGGTCT
GGGCAAGCTGGTAATCGATGAACTGGAACCGGCTCTGCAATTCTGCGACT
ATCTGGTCTACGGCTATGCCGGAATCGAGCGCGATTCGCACAAGGCGGTG
AGTCTGAACCAGCAGTTGGATTTGGATTTGGGCAAGGGACTTTACCGCAC
GGTGACCCGCTTGAAGCGCAAGTATCCCAATGTCAAGATCCTGCTGAGTG
TGGGTGGTGACAAGGACATTGAGCTGGACAAGGATGCCAAGGAGCTGCCC
AACAAGTATCTCGAACTGCTCGAGAGCCCCACAGGTCGCACTCGTTTCGT
GAATACCGTCTACTCGCTGGTAAAGACCTACGGATTCGATGGCTTGGATG
TCGCCTGGCAGTTCCCCAAGAATAAGCCGAAGAAGGTGCACAGTGGAATT
GGCAGCCTGTGGAAGGGCTTCAAGAAGGTCTTCTCCGGCGACTCGATCGT
CGATGAGAAGTCCGAGGAGCACAAGGAGCAGTTCACCGCTCTACTCCGTG
ATGTTAAGAACGCCTTCCGTCCGGACAACCTGCTGCTCTCCACCACTGTT
CTGCCCAATGTGAACTCATCCCTGTTCTACGACATTCCCGCTGTGGTCAA
CTATTTAGACTTTGTGAATCTGGGTACCTTCGATTTCTTTACACCCCAGC
GTAAT
BO07161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-PA | 1359 | Chit-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
| CG1780-PA | 1329 | Idgf4-RA | 419..498 | 462..541 | 225 | 91.2 | Plus |
| CG1780-PB | 1329 | Idgf4-RB | 419..498 | 462..541 | 225 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-RB | 1811 | CG5210-RB | 340..1128 | 17..805 | 3945 | 100 | Plus |
| CG5210-RA | 1541 | CG5210-RA | 70..858 | 17..805 | 3945 | 100 | Plus |
| Idgf4-RC | 1807 | CG1780-RC | 462..742 | 462..742 | 510 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16692346..16692923 | 145..722 | 2890 | 100 | Plus |
| 2R | 25286936 | 2R | 16691770..16691901 | 17..148 | 660 | 100 | Plus |
| X | 23542271 | X | 9929222..9929432 | 672..462 | 485 | 82 | Minus |
| 2R | 25286936 | 2R | 16692986..16693068 | 723..805 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 16449489..16449566 | 468..545 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:28:59 has no hits.
BO07161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:05 Download gff for
BO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chit-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:43 Download gff for
BO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:08:11 Download gff for
BO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 70..858 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:19:39 Download gff for
BO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 70..858 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:19:39 Download gff for
BO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16691770..16691899 | 17..146 | 100 | -> | Plus |
| 2R | 16692348..16692923 | 147..722 | 100 | -> | Plus |
| 2R | 16692986..16693068 | 723..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:08:11 Download gff for
BO07161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12579275..12579404 | 17..146 | 100 | -> | Plus |
| arm_2R | 12579853..12580428 | 147..722 | 100 | -> | Plus |
| arm_2R | 12580491..12580573 | 723..805 | 100 | | Plus |
BO07161.complete Sequence
1390 bp (1390 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630693
> BO07161.complete
GAAGTTATCAGTCGACATGATCATTAAAGCCCTAGCGATCGTTTCGCTGT
GCCTGGCCAGCATTCAGGCCTCCAAGGTGGGAGCTCCGCAGTTGCCCAAG
AAGCACCTGGTCTGCTACTACGATTCCGCCAGTTTCGTCAAGGAAGGTCT
GGGCAAGCTGGTAATCGATGAACTGGAACCGGCTCTGCAATTCTGCGACT
ATCTGGTCTACGGCTATGCCGGAATCGAGCGCGATTCGCACAAGGCGGTG
AGTCTGAACCAGCAGTTGGATTTGGATTTGGGCAAGGGACTTTACCGCAC
GGTGACCCGCTTGAAGCGCAAGTATCCCAATGTCAAGATCCTGCTGAGTG
TGGGTGGTGACAAGGACATTGAGCTGGACAAGGATGCCAAGGAGCTGCCC
AACAAGTATCTCGAACTGCTCGAGAGCCCCACAGGTCGCACTCGTTTCGT
GAATACCGTCTACTCGCTGGTAAAGACCTACGGATTCGATGGCTTGGATG
TCGCCTGGCAGTTCCCCAAGAATAAGCCGAAGAAGGTGCACAGTGGAATT
GGCAGCCTGTGGAAGGGCTTCAAGAAGGTCTTCTCCGGCGACTCGATCGT
CGATGAGAAGTCCGAGGAGCACAAGGAGCAGTTCACCGCTCTACTCCGTG
ATGTTAAGAACGCCTTCCGTCCGGACAACCTGCTGCTCTCCACCACTGTT
CTGCCCAATGTGAACTCATCCCTGTTCTACGACATTCCCGCTGTGGTCAA
CTATTTAGACTTTGTGAATCTGGGTACCTTCGATTTCTTTACACCCCAGC
GTAATCCCGAAGTTGCCGACTATGCCGCACCCATTTATGAACTGAGCGAA
CGCAATCCCGAGTTCAATGTGGCTGCTCAGGTGAAGTACTGGTTGCGCAA
CAACTGTCCCGCCAGCAAGATCAATGTGGGCGTGGCCACCTACGGTCGCC
CATGGAAACTGACCGATGACTCTGGCGACACTGGTGTTCCGCCGGTGAAG
GACGTCAAGGACGAGGCTCCAGTGGGTGGTAACACTCAGGTGCCTGGCAT
TTACAGCTGGCCGGAGGTCTGCGCCCTGCTGCCCAACCAGAACAACGCCT
ATTTGAAGGGCGCCAATGCTCCGCTGATCAAGGTTCAGGATCCTGCCAAG
CGTTTCGGCTCTTATGCCTACAGGGCAGCCGATAAAAAGGGCGACAATGG
CATCTGGGTGAGCTTCGAGGATCCCGATACTGCCGCCGATAAGGCCGGCT
ATGTGCGCACTGAAAATCTGGGTGGAGTCGCGCTATTCGACCTGTCCTAC
GATGATTTCCGAGGACTCTGCACCAACGAGAAGTACCCCATCCTGAGGGC
CATTAAGTATCGTCTGACCAACGCAAGCTTTCTAGACCAT
BO07161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-RB | 1359 | CG5210-PB | 1..1356 | 17..1372 | 6780 | 100 | Plus |
| CG5210-RA | 1359 | CG5210-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
| Idgf4-RC | 1329 | CG1780-PC | 419..827 | 462..870 | 575 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-RB | 1811 | CG5210-RB | 340..1695 | 17..1372 | 6780 | 100 | Plus |
| CG5210-RA | 1541 | CG5210-RA | 70..1425 | 17..1372 | 6780 | 100 | Plus |
| Idgf4-RC | 1807 | CG1780-RC | 462..870 | 462..870 | 575 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16692986..16693635 | 723..1372 | 3250 | 100 | Plus |
| 2R | 25286936 | 2R | 16692346..16692923 | 145..722 | 2890 | 100 | Plus |
| 2R | 25286936 | 2R | 16691770..16691901 | 17..148 | 660 | 100 | Plus |
| X | 23542271 | X | 9929222..9929432 | 672..462 | 485 | 82 | Minus |
| 2L | 23513712 | 2L | 16450288..16450454 | 1199..1365 | 220 | 75.4 | Plus |
| 2L | 23513712 | 2L | 16449489..16449566 | 468..545 | 195 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:08:37 has no hits.
BO07161.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:17:58 Download gff for
BO07161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chit-RA | 1..1359 | 17..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:26 Download gff for
BO07161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chit-RA | 73..1433 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:11 Download gff for
BO07161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 70..1425 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:17:58 Download gff for
BO07161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chit-RA | 73..1433 | 17..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:30 Download gff for
BO07161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5210-RA | 70..1425 | 17..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:30 Download gff for
BO07161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16691770..16691899 | 17..146 | 100 | -> | Plus |
| 2R | 16692348..16692923 | 147..722 | 100 | -> | Plus |
| 2R | 16692986..16693635 | 723..1374 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:11 Download gff for
BO07161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12579275..12579404 | 17..146 | 100 | -> | Plus |
| arm_2R | 12579853..12580428 | 147..722 | 100 | -> | Plus |
| arm_2R | 12580491..12581140 | 723..1374 | 99 | | Plus |
BO07161.pep Sequence
Translation from 16 to 1390
> BO07161.pep
MIIKALAIVSLCLASIQASKVGAPQLPKKHLVCYYDSASFVKEGLGKLVI
DELEPALQFCDYLVYGYAGIERDSHKAVSLNQQLDLDLGKGLYRTVTRLK
RKYPNVKILLSVGGDKDIELDKDAKELPNKYLELLESPTGRTRFVNTVYS
LVKTYGFDGLDVAWQFPKNKPKKVHSGIGSLWKGFKKVFSGDSIVDEKSE
EHKEQFTALLRDVKNAFRPDNLLLSTTVLPNVNSSLFYDIPAVVNYLDFV
NLGTFDFFTPQRNPEVADYAAPIYELSERNPEFNVAAQVKYWLRNNCPAS
KINVGVATYGRPWKLTDDSGDTGVPPVKDVKDEAPVGGNTQVPGIYSWPE
VCALLPNQNNAYLKGANAPLIKVQDPAKRFGSYAYRAADKKGDNGIWVSF
EDPDTAADKAGYVRTENLGGVALFDLSYDDFRGLCTNEKYPILRAIKYRL
TNASFLDH
BO07161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5210-PB | 452 | CG5210-PB | 1..452 | 1..452 | 2381 | 100 | Plus |
| CG5210-PA | 452 | CG5210-PA | 1..452 | 1..452 | 2381 | 100 | Plus |
| Idgf4-PC | 442 | CG1780-PC | 1..442 | 3..450 | 1528 | 63.7 | Plus |
| Idgf4-PB | 442 | CG1780-PB | 1..442 | 3..450 | 1528 | 63.7 | Plus |
| Idgf4-PA | 442 | CG1780-PA | 1..442 | 3..450 | 1528 | 63.7 | Plus |
