Clone Sequence Records
BO07169.3prime Sequence
855 bp (822 high quality bases) assembled on 2005-12-04
> BO07169.3prime
ATGGTCTAGAAAGCTTGCAAAGGCTACGTCGTGTAGTTCAGGAGTCGTGG
GCATTACTTGTACTGATTCGACGCCATTCCATTCGCTGACCACCGTATTG
TGGCTGTGCTGGTGGGGATTGGGGTGATCTTCGACAGAGCCTTCGTAGAT
CTGCAGATCGGTGGCCAGCTTGTCGTGCTCCGTTATTTCGTCAAAGTCAA
AGATCTCGGTTACTTTCACCTTGTTCGTGTTGCTGTCAGTATAGTAATAG
GCATATAGAGCGTCGTTGTGCGTGGTCATCTTGAGGACATGCTCAAAGTT
GTCGACATCGTCCTCTAGCGGTGTGGCTCCACATTCATCCACAAGGATTG
AAACACGGGGTCCATATAAGCGGCTGGAATGAAGAAGTCCTGTGGCATCG
AAGTGAGGCTGGTCATAGAGCGTGAATTTATTTAGCAGTCGTATCCGCAT
GGCGTGGTTCAACTGCAAAATTAAGTCCTCCACCATTACTCTGGCCTGCT
TGGTAAGTTTGGGCGTCAGTGCTGATATTTTTGAAATGGTGGCCAGCAGA
AAGTCCATGGGCACTGTGGCTGGTAGGGAAAGCAGCTTAATGCCGCGATG
CTTGAAAATCCAGTTGGCCAGACCCTTATTGGCTTGTTCGATATAGTCCT
GAATGACATCCAGTACCGTTTGGGGCATGTTTGAGCTCAAAGCGTCCTTT
CTGTGCTTCTTGCACTCCCTGCACTCGGGATCGAACTCCTGGGGCTGGGC
CACCGTTTCGGAAACCACGAATGTCGACTGAACCGCCACGCAGCGTCGAC
AGTTGATCAGATTGTTGCGATGCAGGAAATGCAGGGCATCATCGAATCCC
TGCTG
BO07169.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5295-PA | 1524 | CG5295-RA | 685..1521 | 855..19 | 4160 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bmm-RA | 2437 | CG5295-RA | 1019..1855 | 855..19 | 4170 | 99.9 | Minus |
| bmm-RB | 2301 | CG5295-RB | 1019..1811 | 855..63 | 3950 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14777339..14777608 | 63..332 | 1350 | 100 | Plus |
| 3L | 28110227 | 3L | 14778111..14778279 | 530..698 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 14778339..14778498 | 696..855 | 785 | 99.4 | Plus |
| 3L | 28110227 | 3L | 14777933..14778041 | 421..529 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 14777678..14777767 | 332..421 | 450 | 100 | Plus |
| 3L | 28110227 | 3L | 14777198..14777244 | 19..65 | 235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 05:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 879..932 | 461..514 | 108 | 66.7 | Plus |
BO07169.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:18 Download gff for
BO07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5295-PA | 685..1524 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:04 Download gff for
BO07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5295-PA | 685..1524 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:02:33 Download gff for
BO07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 1019..1866 | 7..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:36 Download gff for
BO07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 1019..1866 | 7..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:36 Download gff for
BO07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14777187..14777241 | 7..62 | 91 | <- | Plus |
| 3L | 14777339..14777607 | 63..331 | 100 | <- | Plus |
| 3L | 14777678..14777766 | 332..420 | 100 | <- | Plus |
| 3L | 14777933..14778041 | 421..529 | 100 | <- | Plus |
| 3L | 14778111..14778277 | 530..696 | 100 | <- | Plus |
| 3L | 14778340..14778498 | 697..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:02:33 Download gff for
BO07169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14770287..14770341 | 7..62 | 91 | <- | Plus |
| arm_3L | 14770439..14770707 | 63..331 | 100 | <- | Plus |
| arm_3L | 14770778..14770866 | 332..420 | 100 | <- | Plus |
| arm_3L | 14771033..14771141 | 421..529 | 100 | <- | Plus |
| arm_3L | 14771211..14771377 | 530..696 | 100 | <- | Plus |
| arm_3L | 14771440..14771598 | 697..855 | 99 | | Plus |
BO07169.5prime Sequence
903 bp (794 high quality bases) assembled on 2005-12-03
> BO07169.5prime
GAAGTTATCAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGG
GCATCTACCACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCAT
CTGTTGCTGGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTG
CTGTCTCCTCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCA
GGGTGGTGAACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAGTCCCTCC
TTCAACATCCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCAGA
CGATGCTCACAAGCGGGTGAATGGACGACTGCACATTTCGCTTACCCGCG
TGTACGATGGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAG
GTCCTGCAGGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCAT
CTTGCCGCCCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGG
ACAATCTGCCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGC
GGCGAGAGTGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCT
GAATTGGGCCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCT
TCGTGCGCATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGC
CAGCAGGGATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGAT
CAACTGTCGACGCTGCGTGGCGGTTCAGTCGACATTCGTGGTTTCCGAAA
CGGTGGCCCAGCCCCAGGAGTTCGATCCCGAGTGCAGGGAGTGCAAGAAG
CACAGAAAGGACGCTTTGAGCTCAACATGCCCCAAACGGTACTGGATGTC
ATT
BO07169.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5295-PA | 1524 | CG5295-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG5295-PA | 1524 | CG5295-RA | 859..888 | 874..903 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 09:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bmm-RB | 2301 | CG5295-RB | 334..1222 | 16..903 | 4420 | 99.9 | Plus |
| bmm-RA | 2437 | CG5295-RA | 334..1222 | 16..903 | 4420 | 99.9 | Plus |
| dob-RA | 1855 | CG5560-RA | 511..769 | 323..581 | 305 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 09:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14778339..14779023 | 860..176 | 3425 | 100 | Minus |
| 3L | 28110227 | 3L | 14785918..14786079 | 177..16 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 14778233..14778279 | 903..858 | 185 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 09:56:32 has no hits.
BO07169.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:19 Download gff for
BO07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5295-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:05 Download gff for
BO07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5295-PA | 1..888 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:43:56 Download gff for
BO07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 329..1222 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:25 Download gff for
BO07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 329..1222 | 9..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:25 Download gff for
BO07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14785919..14786084 | 9..176 | 97 | | Minus |
| 3L | 14778233..14778277 | 860..903 | 97 | <- | Minus |
| 3L | 14778340..14779022 | 177..859 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:43:56 Download gff for
BO07169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14771333..14771377 | 860..903 | 97 | <- | Minus |
| arm_3L | 14779019..14779184 | 9..176 | 97 | | Minus |
| arm_3L | 14771440..14772122 | 177..859 | 100 | <- | Minus |
BO07169.complete Sequence
1555 bp (1555 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630694
> BO07169.complete
GAAGTTATCAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGG
GCATCTACCACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCAT
CTGTTGCTGGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTG
CTGTCTCCTCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCA
GGGTGGTGAACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAGTCCCTCC
TTCAACATCCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCAGA
CGATGCTCACAAGCGGGTGAATGGACGACTGCACATTTCGCTTACCCGCG
TGTACGATGGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAG
GTCCTGCAGGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCAT
CTTGCCGCCCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGG
ACAATCTGCCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGC
GGCGAGAGTGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCT
GAATTGGGCCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCT
TCGTGCGCATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGC
CAGCAGGGATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGAT
CAACTGTCGACGCTGCGTGGCGGTTCAGTCGACATTCGTGGTTTCCGAAA
CGGTGGCCCAGCCCCAGGAGTTCGATCCCGAGTGCAGGGAGTGCAAGAAG
CACAGAAAGGACGCTTTGAGCTCAAACATGCCCCAAACGGTACTGGATGT
CATTCAGGACTATATCGAACAAGCCAATAAGGGTCTGGCCAACTGGATTT
TCAAGCATCGCGGCATTAAGCTGCTTTCCCTACCAGCCACAGTGCCCATG
GACTTTCTGCTGGCCACCATTTCAAAAATATCAGCACTGACGCCCAAACT
TACCAAGCAGGCCAGAGTAATGGTGGAGGACTTAATTTTGCAGTTGAACC
ACGCCATGCGGATACGACTGCTAAATAAATTCACGCTCTATGACCAGCCT
CACTTCGATGCCACAGGACTTCTTCATTCCAGCCGCTTATATGGACCCCG
TGTTTCAATCCTTGTGGATGAATGTGGAGCCACACCGCTAGAGGACGATG
TCGACAACTTTGAGCATGTCCTCAAGATGACCACGCACAACGACGCTCTA
TATGCCTATTACTATACTGACAGCAACACGAACAAGGTGAAAGTAACCGA
GATCTTTGACTTTGACGAAATAACGGAGCACGACAAGCTGGCCACCGATC
TGCAGATCTACGAAGGCTCTGTCGAAGATCACCCCAATCCCCACCAGCAC
AGCCACAATACGGTGGTCAGCGAATGGAATGGCGTCGAATCAGTACAAGT
AATGCCCACGACTCCTGAACTACACGACGTAGCCTTTGCAAGCTTTCTAG
ACCAT
BO07169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bmm-RA | 1524 | CG5295-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| bmm-RB | 1662 | CG5295-PB | 1..1477 | 17..1493 | 7385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bmm-RA | 2437 | CG5295-RA | 334..1855 | 16..1537 | 7610 | 100 | Plus |
| bmm-RB | 2301 | CG5295-RB | 334..1811 | 16..1493 | 7390 | 100 | Plus |
| dob-RA | 1855 | CG5560-RA | 511..769 | 323..581 | 290 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14778339..14779023 | 860..176 | 3425 | 100 | Minus |
| 3L | 28110227 | 3L | 14777339..14777608 | 1493..1224 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 14778111..14778279 | 1026..858 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 14785918..14786079 | 177..16 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 14777933..14778041 | 1135..1027 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 14777678..14777767 | 1224..1135 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 14777198..14777244 | 1537..1491 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:42:58 has no hits.
BO07169.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:18:02 Download gff for
BO07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 1..1524 | 17..1541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:40:29 Download gff for
BO07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 340..1877 | 9..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:15 Download gff for
BO07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 335..1855 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:18:03 Download gff for
BO07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 340..1877 | 9..1549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:09 Download gff for
BO07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 335..1855 | 17..1539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:09 Download gff for
BO07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14777196..14777241 | 1494..1539 | 95 | <- | Minus |
| 3L | 14777339..14777607 | 1225..1493 | 100 | <- | Minus |
| 3L | 14777678..14777766 | 1136..1224 | 100 | <- | Minus |
| 3L | 14777933..14778041 | 1027..1135 | 100 | <- | Minus |
| 3L | 14778111..14778277 | 860..1026 | 100 | <- | Minus |
| 3L | 14778340..14779022 | 177..859 | 100 | <- | Minus |
| 3L | 14785919..14786078 | 17..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:15 Download gff for
BO07169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14770296..14770341 | 1494..1539 | 95 | <- | Minus |
| arm_3L | 14770439..14770707 | 1225..1493 | 100 | <- | Minus |
| arm_3L | 14770778..14770866 | 1136..1224 | 100 | <- | Minus |
| arm_3L | 14771033..14771141 | 1027..1135 | 100 | <- | Minus |
| arm_3L | 14771211..14771377 | 860..1026 | 100 | <- | Minus |
| arm_3L | 14771440..14772122 | 177..859 | 100 | <- | Minus |
| arm_3L | 14779019..14779178 | 17..176 | 100 | | Minus |
BO07169.pep Sequence
Translation from 16 to 1555
> BO07169.pep
MNLSFAGCGFLGIYHVGVAVCFKKYAPHLLLEKIGGASAGSLAACCLLCD
LPLGSMTSDFFRVVNEARRYSLGPFSPSFNIQTCLLEGLQKHLPDDAHKR
VNGRLHISLTRVYDGKNVIISEFESREEVLQALLCACFIPGFSGILPPRF
RGVRYMDGAFSDNLPILDENTITVSPFCGESDICPRDQSSQLFHLNWANT
SIEISRQNINRFVRILFPPRPEFLSKFCQQGFDDALQFLHRNNLINCRRC
VAVQSTFVVSETVAQPQEFDPECRECKKHRKDALSSNMPQTVLDVIQDYI
EQANKGLANWIFKHRGIKLLSLPATVPMDFLLATISKISALTPKLTKQAR
VMVEDLILQLNHAMRIRLLNKFTLYDQPHFDATGLLHSSRLYGPRVSILV
DECGATPLEDDVDNFEHVLKMTTHNDALYAYYYTDSNTNKVKVTEIFDFD
EITEHDKLATDLQIYEGSVEDHPNPHQHSHNTVVSEWNGVESVQVMPTTP
ELHDVAFASFLDH
BO07169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bmm-PA | 507 | CG5295-PA | 1..507 | 1..507 | 2686 | 100 | Plus |
| bmm-PB | 553 | CG5295-PB | 1..492 | 1..492 | 2607 | 100 | Plus |
| dob-PA | 480 | CG5560-PA | 8..293 | 2..288 | 937 | 61.2 | Plus |
