Clone Sequence Records
BO07171.3prime Sequence
635 bp (634 high quality bases) assembled on 2005-12-04
> BO07171.3prime
ATGGTCTAGAAAGCTTGCCCTGCAGCACTTCCCACCCTTGCTGCCCTTGG
GATTGGGCTTCAGATGGAGCGTGTCCTTCTGCTGCTCGTTGGGGGAGGTG
CGCAGCTTGTGATCGAGCACCTGTCGCGTAATCGACAAGAACATGTTCTC
CACGTTTATGTTGTCTTTGGCAGATGTCTCGAATAGCTCGATGTCCATTT
GTTTCGCAAACCGCTGCGCGTCTTCGGTAATGACCACCTTCCTGTCCGGA
TCGTCGTTCTTGTTGCCCACTAATACTTTTTTAACCACATCGCAGTTATT
CTGGATCTCCTCCAGCCAGCGGCGGACGTTCGCAAAGGATTCGCCGTTCG
TGACGTCGTAGACGACAATGACGCCGTGGGTGCCGCGGTAGTAGGTGCTG
GTGATTGTCCGGAAGCGCTCCTGCCCGGCCGTGTCCCAGATCTGCAGCTT
TACGCGCATGCCCTCGATGTCCACGGTGCGGATCTTAAAGTCCACGCCGA
TGGTGGTGATGTAACTGCCTGAGAATGTGTCGTCCGAGAACCGGATGAGC
AGCGACGACTTGCCCACGCCGCTATCGCCGATTATTAGCAACTTGAATAG
ATGATCGAAGCCGCGTGCCATGTCGACTGATAACT
BO07171.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9575-PA | 606 | Rab35-RA | 1..603 | 621..19 | 3015 | 100 | Minus |
CG14791-PC | 693 | Rab27-RC | 196..233 | 447..410 | 140 | 94.7 | Minus |
CG14791-PB | 711 | Rab27-RB | 214..251 | 447..410 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 2024 | CG9575-RB | 926..1528 | 621..19 | 3015 | 100 | Minus |
Rab35-RD | 3348 | CG9575-RD | 926..1528 | 621..19 | 3015 | 100 | Minus |
Rab35-RA | 2635 | CG9575-RA | 926..1528 | 621..19 | 3015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20157970..20158270 | 270..570 | 1505 | 100 | Plus |
X | 23542271 | X | 20157586..20157838 | 19..271 | 1265 | 100 | Plus |
X | 23542271 | X | 20158895..20158947 | 569..621 | 265 | 100 | Plus |
X | 23542271 | X | 12461504..12461623 | 346..465 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:18:25 has no hits.
BO07171.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:22 Download gff for
BO07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-PA | 1..606 | 16..621 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:09 Download gff for
BO07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9575-PA | 1..606 | 16..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:24:16 Download gff for
BO07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 8..627 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:48:04 Download gff for
BO07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 8..627 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:48:04 Download gff for
BO07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20158896..20158955 | 570..627 | 95 | | Plus |
X | 20157575..20157836 | 8..269 | 98 | <- | Plus |
X | 20157970..20158269 | 270..569 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:24:16 Download gff for
BO07171.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20052929..20052988 | 570..627 | 95 | | Plus |
arm_X | 20051608..20051869 | 8..269 | 98 | <- | Plus |
arm_X | 20052003..20052302 | 270..569 | 100 | <- | Plus |
BO07171.5prime Sequence
635 bp (634 high quality bases) assembled on 2005-12-04
> BO07171.5prime
GAAGTTATCAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGC
TAATAATCGGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTC
TCGGACGACACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTT
TAAGATCCGCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCT
GGGACACGGCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTAC
CGCGGCACCCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATC
CTTTGCGAACGTCCGCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATG
TGGTTAAAAAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAG
GTGGTCATTACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGA
GCTATTCGAGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCT
TGTCGATTACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAAC
GAGCAGCAGAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAA
GGGTGGGAAGTGCTGCAGGGCAAGCTTTCTAGACC
BO07171.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9575-PA | 606 | Rab35-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
CG14791-PC | 693 | Rab27-RC | 196..233 | 191..228 | 140 | 94.7 | Plus |
CG14791-PB | 711 | Rab27-RB | 214..251 | 191..228 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 2024 | CG9575-RB | 926..1528 | 17..619 | 3015 | 100 | Plus |
Rab35-RD | 3348 | CG9575-RD | 926..1528 | 17..619 | 3015 | 100 | Plus |
Rab35-RA | 2635 | CG9575-RA | 926..1528 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20157970..20158270 | 368..68 | 1505 | 100 | Minus |
X | 23542271 | X | 20157586..20157838 | 619..367 | 1265 | 100 | Minus |
X | 23542271 | X | 20158895..20158947 | 69..17 | 265 | 100 | Minus |
X | 23542271 | X | 12461504..12461623 | 292..173 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:10:28 has no hits.
BO07171.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:23 Download gff for
BO07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:11 Download gff for
BO07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9575-PA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:35:28 Download gff for
BO07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 11..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:54 Download gff for
BO07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 918..1539 | 11..630 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:54 Download gff for
BO07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20157575..20157836 | 369..630 | 98 | <- | Minus |
X | 20157970..20158269 | 69..368 | 100 | <- | Minus |
X | 20158896..20158955 | 11..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:35:28 Download gff for
BO07171.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20051608..20051869 | 369..630 | 98 | <- | Minus |
arm_X | 20052003..20052302 | 69..368 | 100 | <- | Minus |
arm_X | 20052929..20052988 | 11..68 | 95 | | Minus |
BO07171.complete Sequence
637 bp (637 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630695
> BO07171.complete
GAAGTTATCAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGC
TAATAATCGGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTC
TCGGACGACACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTT
TAAGATCCGCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCT
GGGACACGGCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTAC
CGCGGCACCCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATC
CTTTGCGAACGTCCGCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATG
TGGTTAAAAAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAG
GTGGTCATTACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGA
GCTATTCGAGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCT
TGTCGATTACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAAC
GAGCAGCAGAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAA
GGGTGGGAAGTGCTGCAGGGCAAGCTTTCTAGACCAT
BO07171.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 606 | CG9575-PB | 1..603 | 17..619 | 3015 | 100 | Plus |
Rab35-RD | 606 | CG9575-PD | 1..603 | 17..619 | 3015 | 100 | Plus |
Rab35-RA | 606 | CG9575-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-RB | 2024 | CG9575-RB | 926..1528 | 17..619 | 3015 | 100 | Plus |
Rab35-RD | 3348 | CG9575-RD | 926..1528 | 17..619 | 3015 | 100 | Plus |
Rab35-RA | 2635 | CG9575-RA | 926..1528 | 17..619 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20157970..20158270 | 368..68 | 1505 | 100 | Minus |
X | 23542271 | X | 20157586..20157838 | 619..367 | 1265 | 100 | Minus |
X | 23542271 | X | 20158895..20158947 | 69..17 | 265 | 100 | Minus |
X | 23542271 | X | 12461504..12461623 | 292..173 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:11:11 has no hits.
BO07171.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:27 Download gff for
BO07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 1..606 | 17..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:51 Download gff for
BO07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 884..1505 | 11..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:57 Download gff for
BO07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 926..1528 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:27 Download gff for
BO07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 884..1505 | 11..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:20 Download gff for
BO07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab35-RA | 926..1528 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:20 Download gff for
BO07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20157970..20158269 | 69..368 | 100 | <- | Minus |
X | 20158896..20158947 | 17..68 | 100 | | Minus |
X | 20157583..20157836 | 369..621 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:57 Download gff for
BO07171.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20051616..20051869 | 369..621 | 99 | <- | Minus |
arm_X | 20052003..20052302 | 69..368 | 100 | <- | Minus |
arm_X | 20052929..20052980 | 17..68 | 100 | | Minus |
BO07171.pep Sequence
Translation from 16 to 637
> BO07171.pep
MARGFDHLFKLLIIGDSGVGKSSLLIRFSDDTFSGSYITTIGVDFKIRTV
DIEGMRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFANVR
RWLEEIQNNCDVVKKVLVGNKNDDPDRKVVITEDAQRFAKQMDIELFETS
AKDNINVENMFLSITRQVLDHKLRTSPNEQQKDTLHLKPNPKGSKGGKCC
RASFLDH
BO07171.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab35-PB | 201 | CG9575-PB | 1..201 | 1..201 | 1046 | 100 | Plus |
Rab35-PD | 201 | CG9575-PD | 1..201 | 1..201 | 1046 | 100 | Plus |
Rab35-PA | 201 | CG9575-PA | 1..201 | 1..201 | 1046 | 100 | Plus |
Rab35-PC | 190 | CG9575-PC | 8..190 | 19..201 | 953 | 100 | Plus |
Rab1-PA | 205 | CG3320-PA | 8..184 | 5..183 | 531 | 58.3 | Plus |