Clone Sequence Records
BO07177.3prime Sequence
929 bp (833 high quality bases) assembled on 2005-12-04
> BO07177.3prime
ATGGTCTAGAAAGCTTGCCTCGGATGAGTAGAGCTTTTTCTTGGTCAGCG
TGAAGTCGGGACTGATGTTGATGGTATTGCTACGAGTAAGGTTTTTTATA
AACTGCGGCACCAAGGAGCTCCAGCCGCTCTTGTCCTGCCTCAATGTCAA
GTACAGCTCGAAGATGGACACCGTGTCCGGATCCACTTTAAAGTATGCAA
TGCGCTTGACTTTGTTGGGCTCGCTCTCGAACTCAATGAAGAGCGTGCAG
GCCCGCTCGCCGCATGGTTCCCGCTCCGACATCCGGATGATCTCGGCGGC
GATGCGCTGCGTGAGGTCGTTGGGCAGCGTGACCTCGGTACAGGCCAGGT
GGCGACGCTTGGCATCCCGTAGCTGAGCCTGCAGTTGCTGCGACAGTTCC
CGCACTGCGCTGGCGCTCACATCGTCCAAGTTGTCGGCGGCCCCAAACCG
AGCGCAGGCGGTCGACTGCAGCGGCGATGCGGGCAGTGGGTGGTGCTGCT
GGGCGGTGCTGGACAGCACGTTGGTCATGTAGGCGTGATGATAGGCGGCT
GCACTGCCACCGCTAAGGGGCGCCTCAAAACTGGCCGCGGCCACCGGCGA
CGTGGCCTGTTTGGGAGTGGTCATACCGACGGATCCTCCGCCCGCCAACG
GACCACCGCCCCCTGCCGATGGAGGCGTGGCCGATGGGCGGGTGTTGAGC
GCCTGGTGCTGTCGCATGTGGAGCACAGAGGCTGGATGGCCATCTACCAC
GTCGACGTCCAGAATGCCCTCGCCGGCGGCTGTGTTCCCGTTCACGCCTG
CGGTCAGCTCCTCCTCCTCCTCCAGCGGCGCCGTAGAAGCTTGCCAGTCT
TTTAATTTTATTACACCGAAATTTCCCTGAATGTGATTTTGTACTGAGAG
CACTTCCATCTTCATGTCGACTGATAACT
BO07177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7533-PC | 900 | chrb-RC | 64..897 | 852..19 | 4170 | 100 | Minus |
CG7533-PC | 900 | chrb-RC | 1..53 | 915..863 | 240 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 5845 | CG7533-RC | 986..1882 | 915..19 | 4425 | 99.7 | Minus |
chrb-RE | 4908 | CG7533-RE | 114..945 | 850..19 | 4160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11494088..11494733 | 850..205 | 3230 | 100 | Minus |
3L | 28110227 | 3L | 11494846..11494956 | 205..95 | 555 | 100 | Minus |
3L | 28110227 | 3L | 11495017..11495092 | 94..19 | 380 | 100 | Minus |
3L | 28110227 | 3L | 11488535..11488600 | 915..851 | 265 | 97 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:52:04 has no hits.
BO07177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:35 Download gff for
BO07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..900 | 16..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:25 Download gff for
BO07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..900 | 16..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:58 Download gff for
BO07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1882 | 19..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:57 Download gff for
BO07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1882 | 19..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:57 Download gff for
BO07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11494846..11494956 | 95..205 | 100 | -> | Minus |
3L | 11495017..11495092 | 19..94 | 100 | | Minus |
3L | 11488532..11488601 | 849..920 | 91 | -> | Minus |
3L | 11494090..11494732 | 206..848 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:58 Download gff for
BO07177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11481632..11481701 | 849..920 | 91 | -> | Minus |
arm_3L | 11487190..11487832 | 206..848 | 100 | -> | Minus |
arm_3L | 11487946..11488056 | 95..205 | 100 | -> | Minus |
arm_3L | 11488117..11488192 | 19..94 | 100 | | Minus |
BO07177.5prime Sequence
890 bp (789 high quality bases) assembled on 2005-12-04
> BO07177.5prime
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACCTTACTCGT
AGCAATACCATCAACATCAGTCCCGACTTCACGCTGACCA
BO07177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7533-PC | 900 | chrb-RC | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 5845 | CG7533-RC | 986..1859 | 17..890 | 4370 | 100 | Plus |
chrb-RE | 4908 | CG7533-RE | 114..922 | 82..890 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11494088..11494733 | 82..727 | 3230 | 100 | Plus |
3L | 28110227 | 3L | 11494846..11494956 | 727..837 | 555 | 100 | Plus |
3L | 28110227 | 3L | 11488535..11488601 | 17..83 | 335 | 100 | Plus |
3L | 28110227 | 3L | 11495017..11495069 | 838..890 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:57:49 has no hits.
BO07177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:36 Download gff for
BO07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:27 Download gff for
BO07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7533-PC | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:05 Download gff for
BO07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1858 | 12..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:50 Download gff for
BO07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 983..1858 | 12..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:50 Download gff for
BO07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11488532..11488601 | 12..83 | 95 | -> | Plus |
3L | 11494090..11494732 | 84..726 | 100 | -> | Plus |
3L | 11494846..11494956 | 727..837 | 100 | -> | Plus |
3L | 11495017..11495068 | 838..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:05 Download gff for
BO07177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11481632..11481701 | 12..83 | 95 | -> | Plus |
arm_3L | 11487190..11487832 | 84..726 | 100 | -> | Plus |
arm_3L | 11487946..11488056 | 727..837 | 100 | -> | Plus |
arm_3L | 11488117..11488168 | 838..889 | 100 | | Plus |
BO07177.complete Sequence
931 bp (931 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ630696
> BO07177.complete
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACCTTACTCGT
AGCAATACCATCAACATCAGTCCCGACTTCACGCTGACCAAGAAAAAGCT
CTACTCATCCGAGGCAAGCTTTCTAGACCAT
BO07177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 900 | CG7533-PC | 1..897 | 17..913 | 4485 | 100 | Plus |
chrb-RE | 702 | CG7533-PE | 1..699 | 215..913 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-RC | 5845 | CG7533-RC | 986..1882 | 17..913 | 4485 | 100 | Plus |
chrb-RE | 4908 | CG7533-RE | 114..945 | 82..913 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11494088..11494733 | 82..727 | 3230 | 100 | Plus |
3L | 28110227 | 3L | 11494846..11494956 | 727..837 | 555 | 100 | Plus |
3L | 28110227 | 3L | 11495017..11495092 | 838..913 | 380 | 100 | Plus |
3L | 28110227 | 3L | 11488535..11488601 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:09:37 has no hits.
BO07177.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:24 Download gff for
BO07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:18 Download gff for
BO07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 973..1872 | 12..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:26 Download gff for
BO07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 986..1882 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:25 Download gff for
BO07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 973..1872 | 12..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:06 Download gff for
BO07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrb-RC | 986..1882 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:06 Download gff for
BO07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11488535..11488601 | 17..83 | 100 | -> | Plus |
3L | 11494090..11494732 | 84..726 | 100 | -> | Plus |
3L | 11494846..11494956 | 727..837 | 100 | -> | Plus |
3L | 11495017..11495092 | 838..915 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:26 Download gff for
BO07177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11481635..11481701 | 17..83 | 100 | -> | Plus |
arm_3L | 11487190..11487832 | 84..726 | 100 | -> | Plus |
arm_3L | 11487946..11488056 | 727..837 | 100 | -> | Plus |
arm_3L | 11488117..11488192 | 838..915 | 97 | | Plus |
BO07177.pep Sequence
Translation from 16 to 931
> BO07177.pep
MKMEVLSVQNHIQGKFGVNKIKDWQASTAPLEEEEELTAGVNGNTAAGEG
ILDVDVVDGHPASVLHMRQHQALNTRPSATPPSAGGGGPLAGGGSVGMTT
PKQATSPVAAASFEAPLSGGSAAAYHHAYMTNVLSSTAQQHHPLPASPLQ
STACARFGAADNLDDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPND
LTQRIAAEIIRMSEREPCGERACTLFIEFESEPNKVKRIAYFKVDPDTVS
IFELYLTLRQDKSGWSSLVPQFIKNLTRSNTINISPDFTLTKKKLYSSEA
SFLDH
BO07177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrb-PC | 299 | CG7533-PC | 1..299 | 1..299 | 1533 | 100 | Plus |
chrb-PE | 233 | CG7533-PE | 1..233 | 67..299 | 1193 | 100 | Plus |
scyl-PC | 280 | CG7590-PC | 49..254 | 92..299 | 419 | 45.6 | Plus |
scyl-PA | 280 | CG7590-PA | 49..254 | 92..299 | 419 | 45.6 | Plus |