Clone BO07177 Report

Search the DGRC for BO07177

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:71
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptchrb-RC
Protein status:BO07177.pep: validated full length
Sequenced Size:931

Clone Sequence Records

BO07177.3prime Sequence

929 bp (833 high quality bases) assembled on 2005-12-04

> BO07177.3prime
ATGGTCTAGAAAGCTTGCCTCGGATGAGTAGAGCTTTTTCTTGGTCAGCG
TGAAGTCGGGACTGATGTTGATGGTATTGCTACGAGTAAGGTTTTTTATA
AACTGCGGCACCAAGGAGCTCCAGCCGCTCTTGTCCTGCCTCAATGTCAA
GTACAGCTCGAAGATGGACACCGTGTCCGGATCCACTTTAAAGTATGCAA
TGCGCTTGACTTTGTTGGGCTCGCTCTCGAACTCAATGAAGAGCGTGCAG
GCCCGCTCGCCGCATGGTTCCCGCTCCGACATCCGGATGATCTCGGCGGC
GATGCGCTGCGTGAGGTCGTTGGGCAGCGTGACCTCGGTACAGGCCAGGT
GGCGACGCTTGGCATCCCGTAGCTGAGCCTGCAGTTGCTGCGACAGTTCC
CGCACTGCGCTGGCGCTCACATCGTCCAAGTTGTCGGCGGCCCCAAACCG
AGCGCAGGCGGTCGACTGCAGCGGCGATGCGGGCAGTGGGTGGTGCTGCT
GGGCGGTGCTGGACAGCACGTTGGTCATGTAGGCGTGATGATAGGCGGCT
GCACTGCCACCGCTAAGGGGCGCCTCAAAACTGGCCGCGGCCACCGGCGA
CGTGGCCTGTTTGGGAGTGGTCATACCGACGGATCCTCCGCCCGCCAACG
GACCACCGCCCCCTGCCGATGGAGGCGTGGCCGATGGGCGGGTGTTGAGC
GCCTGGTGCTGTCGCATGTGGAGCACAGAGGCTGGATGGCCATCTACCAC
GTCGACGTCCAGAATGCCCTCGCCGGCGGCTGTGTTCCCGTTCACGCCTG
CGGTCAGCTCCTCCTCCTCCTCCAGCGGCGCCGTAGAAGCTTGCCAGTCT
TTTAATTTTATTACACCGAAATTTCCCTGAATGTGATTTTGTACTGAGAG
CACTTCCATCTTCATGTCGACTGATAACT

BO07177.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7533-PC 900 chrb-RC 64..897 852..19 4170 100 Minus
CG7533-PC 900 chrb-RC 1..53 915..863 240 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 5845 CG7533-RC 986..1882 915..19 4425 99.7 Minus
chrb-RE 4908 CG7533-RE 114..945 850..19 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11494088..11494733 850..205 3230 100 Minus
3L 28110227 3L 11494846..11494956 205..95 555 100 Minus
3L 28110227 3L 11495017..11495092 94..19 380 100 Minus
3L 28110227 3L 11488535..11488600 915..851 265 97 Minus
Blast to na_te.dros performed on 2015-02-10 16:52:04 has no hits.

BO07177.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:35 Download gff for BO07177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..900 16..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:25 Download gff for BO07177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..900 16..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:04:58 Download gff for BO07177.3prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1882 19..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:57 Download gff for BO07177.3prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1882 19..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:57 Download gff for BO07177.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11494846..11494956 95..205 100 -> Minus
3L 11495017..11495092 19..94 100   Minus
3L 11488532..11488601 849..920 91 -> Minus
3L 11494090..11494732 206..848 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:04:58 Download gff for BO07177.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11481632..11481701 849..920 91 -> Minus
arm_3L 11487190..11487832 206..848 100 -> Minus
arm_3L 11487946..11488056 95..205 100 -> Minus
arm_3L 11488117..11488192 19..94 100   Minus

BO07177.5prime Sequence

890 bp (789 high quality bases) assembled on 2005-12-04

> BO07177.5prime
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACCTTACTCGT
AGCAATACCATCAACATCAGTCCCGACTTCACGCTGACCA

BO07177.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7533-PC 900 chrb-RC 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 5845 CG7533-RC 986..1859 17..890 4370 100 Plus
chrb-RE 4908 CG7533-RE 114..922 82..890 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11494088..11494733 82..727 3230 100 Plus
3L 28110227 3L 11494846..11494956 727..837 555 100 Plus
3L 28110227 3L 11488535..11488601 17..83 335 100 Plus
3L 28110227 3L 11495017..11495069 838..890 265 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:57:49 has no hits.

BO07177.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:11:36 Download gff for BO07177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..873 17..889 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:27 Download gff for BO07177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7533-PC 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:16:05 Download gff for BO07177.5prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1858 12..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:50 Download gff for BO07177.5prime
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 983..1858 12..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:50 Download gff for BO07177.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11488532..11488601 12..83 95 -> Plus
3L 11494090..11494732 84..726 100 -> Plus
3L 11494846..11494956 727..837 100 -> Plus
3L 11495017..11495068 838..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:16:05 Download gff for BO07177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11481632..11481701 12..83 95 -> Plus
arm_3L 11487190..11487832 84..726 100 -> Plus
arm_3L 11487946..11488056 727..837 100 -> Plus
arm_3L 11488117..11488168 838..889 100   Plus

BO07177.complete Sequence

931 bp (931 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ630696

> BO07177.complete
GAAGTTATCAGTCGACATGAAGATGGAAGTGCTCTCAGTACAAAATCACA
TTCAGGGAAAATTCGGTGTTAATAAAATTAAAGACTGGCAAGCTTCTACG
GCGCCGCTGGAGGAGGAGGAGGAGCTGACCGCAGGCGTGAACGGGAACAC
AGCCGCCGGCGAGGGCATTCTGGACGTCGACGTGGTAGATGGCCATCCAG
CCTCTGTGCTCCACATGCGACAGCACCAGGCGCTCAACACCCGCCCATCG
GCCACGCCTCCATCGGCAGGGGGCGGTGGTCCGTTGGCGGGCGGAGGATC
CGTCGGTATGACCACTCCCAAACAGGCCACGTCGCCGGTGGCCGCGGCCA
GTTTTGAGGCGCCCCTTAGCGGTGGCAGTGCAGCCGCCTATCATCACGCC
TACATGACCAACGTGCTGTCCAGCACCGCCCAGCAGCACCACCCACTGCC
CGCATCGCCGCTGCAGTCGACCGCCTGCGCTCGGTTTGGGGCCGCCGACA
ACTTGGACGATGTGAGCGCCAGCGCAGTGCGGGAACTGTCGCAGCAACTG
CAGGCTCAGCTACGGGATGCCAAGCGTCGCCACCTGGCCTGTACCGAGGT
CACGCTGCCCAACGACCTCACGCAGCGCATCGCCGCCGAGATCATCCGGA
TGTCGGAGCGGGAACCATGCGGCGAGCGGGCCTGCACGCTCTTCATTGAG
TTCGAGAGCGAGCCCAACAAAGTCAAGCGCATTGCATACTTTAAAGTGGA
TCCGGACACGGTGTCCATCTTCGAGCTGTACTTGACATTGAGGCAGGACA
AGAGCGGCTGGAGCTCCTTGGTGCCGCAGTTTATAAAAAACCTTACTCGT
AGCAATACCATCAACATCAGTCCCGACTTCACGCTGACCAAGAAAAAGCT
CTACTCATCCGAGGCAAGCTTTCTAGACCAT

BO07177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 900 CG7533-PC 1..897 17..913 4485 100 Plus
chrb-RE 702 CG7533-PE 1..699 215..913 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-RC 5845 CG7533-RC 986..1882 17..913 4485 100 Plus
chrb-RE 4908 CG7533-RE 114..945 82..913 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11494088..11494733 82..727 3230 100 Plus
3L 28110227 3L 11494846..11494956 727..837 555 100 Plus
3L 28110227 3L 11495017..11495092 838..913 380 100 Plus
3L 28110227 3L 11488535..11488601 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:09:37 has no hits.

BO07177.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:16:24 Download gff for BO07177.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 1..900 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:38:18 Download gff for BO07177.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 973..1872 12..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:26 Download gff for BO07177.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 986..1882 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:16:25 Download gff for BO07177.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 973..1872 12..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:06 Download gff for BO07177.complete
Subject Subject Range Query Range Percent Splice Strand
chrb-RC 986..1882 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:06 Download gff for BO07177.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11488535..11488601 17..83 100 -> Plus
3L 11494090..11494732 84..726 100 -> Plus
3L 11494846..11494956 727..837 100 -> Plus
3L 11495017..11495092 838..915 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:26 Download gff for BO07177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11481635..11481701 17..83 100 -> Plus
arm_3L 11487190..11487832 84..726 100 -> Plus
arm_3L 11487946..11488056 727..837 100 -> Plus
arm_3L 11488117..11488192 838..915 97   Plus

BO07177.pep Sequence

Translation from 16 to 931

> BO07177.pep
MKMEVLSVQNHIQGKFGVNKIKDWQASTAPLEEEEELTAGVNGNTAAGEG
ILDVDVVDGHPASVLHMRQHQALNTRPSATPPSAGGGGPLAGGGSVGMTT
PKQATSPVAAASFEAPLSGGSAAAYHHAYMTNVLSSTAQQHHPLPASPLQ
STACARFGAADNLDDVSASAVRELSQQLQAQLRDAKRRHLACTEVTLPND
LTQRIAAEIIRMSEREPCGERACTLFIEFESEPNKVKRIAYFKVDPDTVS
IFELYLTLRQDKSGWSSLVPQFIKNLTRSNTINISPDFTLTKKKLYSSEA
SFLDH

BO07177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrb-PC 299 CG7533-PC 1..299 1..299 1533 100 Plus
chrb-PE 233 CG7533-PE 1..233 67..299 1193 100 Plus
scyl-PC 280 CG7590-PC 49..254 92..299 419 45.6 Plus
scyl-PA 280 CG7590-PA 49..254 92..299 419 45.6 Plus